mRNA_L-elsbetiae_contig8416.17428.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8416.17428.1
Unique NamemRNA_L-elsbetiae_contig8416.17428.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: D7FRL4_ECTSI (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL4_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 8.470e-107
Identity = 163/205 (79.51%), Postives = 181/205 (88.29%), Query Frame = 1
Query:    1 EYDLATERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHG-GQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVH 612
            EYDLATERRRAEERAGN +WVRRFPHERGNWPTHVFIPVP+SA+F+SMAEASV+HFR++LA AWRE HG  + GKGGKKR RDGR+   +  A+S GK DPPEVV+NDMDP+G+QHLSLSKTT LRAHQI PFV GLKEAVKSSRSF AS V GYDVLVNEDK+RSFVCLRVRGGRQM+L LIAKVDPLMRRFKQ EYYE  ++H
Sbjct:   54 EYDLATERRRAEERAGNIRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWREGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQINPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLSLIAKVDPLMRRFKQSEYYEVIIMH 258          
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: A0A6H5K6W9_9PHAE (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W9_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 2.910e-98
Identity = 180/313 (57.51%), Postives = 206/313 (65.81%), Query Frame = 1
Query:    1 EYDLATERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHG-GQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGDVSTYVGSSSEGAPSPLAARVASGAPKSAGVGEGSLGGDDSVDDSSGEEK-----------------DEEDVPSEICLPVSAVLCKAGTTCFEAPLVAGR 885
            EYDLATERRRAEERAGN  WVRRFPHERGNWPTHVFIPVP+S++F+SMAEASV+HFR++LA AWR+RHG  + GKGG+KR  DGRR   +  A+S GK DPPEVV+N+MDP+G+QHLSLSKTT LRAHQI+PFV+GLK+AVKSSR                         RVRGGR+M+L LIAKVDPLMRRFKQ  YYE+P+VHVSVASVLGDVSTYV SSS   PS                                                      +DVPSE+CL V  V+CKAGTT FEAPL AGR
Sbjct:   43 EYDLATERRRAEERAGNIPWVRRFPHERGNWPTHVFIPVPNSSAFKSMAEASVSHFRQRLAAAWRDRHGRAEGGKGGRKRTSDGRRRSNQASASSAGKLDPPEVVMNNMDPSGRQHLSLSKTTALRAHQIDPFVQGLKDAVKSSR-------------------------RVRGGRKMVLGLIAKVDPLMRRFKQSGYYEEPIVHVSVASVLGDVSTYVSSSSR-VPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISSDDVPSEVCLTVDVVMCKAGTTYFEAPL-AGR 328          
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: G4YH94_PHYSP (U6 snRNA phosphodiesterase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH94_PHYSP)

HSP 1 Score: 112 bits (279), Expect = 3.730e-25
Identity = 74/211 (35.07%), Postives = 109/211 (51.66%), Query Frame = 1
Query:   10 LATERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYP-EKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGD 639
            + T+R+R +E     QW R FPH  GNWP+HV I +P +   R MA+ ++   +E +                   G +    P E++R   +  T             G  HLSLS+  +L   QIE FV+ L  A+K  + F  ++  G  VLVN+DK+RSF+ LRV  G Q   +++  VD  +  FKQP YY+DP+ HVS+AS +G+
Sbjct:   43 IGTKRKRPDE----PQWKRAFPHVDGNWPSHVRIDIPVTEELREMAKCAIDRAQELV-------------------GENVTLVPFEELRLGESSST----------GSGGGLHLSLSRAFILTYDQIEGFVDSLHTALKWRQRFSVTL-EGALVLVNDDKTRSFLALRVSAGAQQFNQVLRCVDQCLACFKQPTYYQDPIPHVSIASSMGE 219          
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: D0MXX8_PHYIT (U6 snRNA phosphodiesterase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MXX8_PHYIT)

HSP 1 Score: 110 bits (276), Expect = 8.310e-25
Identity = 73/210 (34.76%), Postives = 109/210 (51.90%), Query Frame = 1
Query:   10 LATERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGD 639
            + T+R+R++E+    QW R FPH  GNWP+HV I +P +   R +A  ++   +E + DA                        E++  TSTG TD               HLSLS+  VL   QI  FV+ L+ A+K  + F  ++     VL N++K+RSF+ LRV  G Q   +++  VD  + R +QP YY+DP+ HVS+AS LG+
Sbjct:   38 VGTKRKRSDEQ----QWKRAFPHVDGNWPSHVRIDIPVTHELRELARHAIERAQEIVGDAV------------------AMLAFEELGLTSTGATD-------------YLHLSLSRPFVLTYDQINGFVDSLRAALKWQQRFSVTLRRAL-VLANDEKTRSFLALRVGEGEQQFTQVLRCVDQCLSRVEQPTYYKDPIPHVSIASSLGE 211          
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: A0A836CMF3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF3_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.840e-24
Identity = 80/240 (33.33%), Postives = 104/240 (43.33%), Query Frame = 1
Query:   64 RRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQ----------------------------VGKGGKKRGRDGRRYPEKIRATSTG------------------------KTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVAS 627
            R  PHERG WP+HV I VP SA  R ++ A++ H   +L  A + +                                VG      G DG R          G                            P         AG  HLSLS+   LRAHQ+EPF   L+ A   +R+F   V   Y+VLVN+D++RSFVCL+V GG   IL LI +V+  +  F+Q  YYEDP +H+SVAS
Sbjct:   24 RAAPHERGRWPSHVHIAVPPSAELRELSAAAIRHLEARLLRAAQAQQAXXXXXXXXXXXXXXXXXXXAPRVIPHDAFAVGGSSANGGGDGLRAXXXXXXXXXGGRGNSCXXXXXXXXXXXAAAXXXXXXXXPRQGXEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 263          
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: A0A4D9D6D2_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6D2_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.410e-24
Identity = 76/218 (34.86%), Postives = 116/218 (53.21%), Query Frame = 1
Query:   43 AGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYP--------EKIRATSTGKTDPPEV--VINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVV------PGYDVLVNEDKSRSFVCLRVR-GGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGDVS 645
            A    W+R  PH  GNW THV+I VP++     MA+A V   R +L +      GG+ G   KK   +    P        E       G+ +  E   + +D + +GQ HLSLS+T  LR++ +EPFV  L +A+  +R+F   +        G  +LVN+D+SRSFV + V  GG   + +++  VD ++ +++QP YY   + H+SVA+V GDVS
Sbjct:  132 ASTVDWIRSVPHFEGNWATHVYITVPNTREVVRMAKACVQEARRRLRNVLGTETGGEEGWQEKKELVENDLNPVPSADSSDEDXXXXGAGEEEGRESRHLPSDQETSGQ-HLSLSRTVYLRSYHMEPFVADLGKALAWARAFTFRLAWRRGRGGGEGLLVNDDRSRSFVTVPVEEGGEGRLRQVVESVDEVLVKYRQPPYYRGALFHISVAAVKGDVS 348          
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: A0A8K1FRB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRB5_PYTOL)

HSP 1 Score: 108 bits (271), Expect = 7.160e-24
Identity = 68/200 (34.00%), Postives = 99/200 (49.50%), Query Frame = 1
Query:   43 AGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQ-HLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGD 639
            A + +W R FPH  GNWP+HV I VP +   ++  +  +   +  + D                                       EV +  M    ++ H+SLS+  VL   QIEPFVE L+ A+K  R F A  V    VLVN++++RSF+ L++  G+Q  +K +  VD  M+ F+ P YYEDP+ HVS+AS LGD
Sbjct:   42 ASSVRWTRAFPHVEGNWPSHVKINVPLTPELQTHCQRVITATQRFVGD---------------------------------------EVELIPMASEEEELHMSLSRPFVLTYEQIEPFVEALRAALKWRRRF-ALTVEEPTVLVNDERTRSFLALQLDAGKQEFVKTVRCVDQCMQDFQLPTYYEDPIPHVSIASALGD 201          
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: W2QD81_PHYPN (U6 snRNA phosphodiesterase n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QD81_PHYPN)

HSP 1 Score: 107 bits (266), Expect = 3.210e-23
Identity = 70/210 (33.33%), Postives = 109/210 (51.90%), Query Frame = 1
Query:   10 LATERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGD 639
            + T+R+R++ER    QW R FPH  GNWP+HV I VP S   R +A  ++   ++ + +A                          +     G ++P     N +      HLSLS+  VL  +QI  FV+ L+ A+K  + F  ++     VLVN++K+RSF+ LRV  G Q   +++  V+  + RF+ P YY+DP+ HVS+AS LG+
Sbjct:   38 VGTKRKRSDER----QWKRAFPHVDGNWPSHVRIDVPVSDELRELARYAIERAQDIVGEA-----------------------VSLVPFEELGLSEPSTEANNTL------HLSLSRPFVLTYNQINGFVDSLRAALKWQQRFNVTLRRAL-VLVNDEKTRSFLALRVDEGEQQFTQVLRCVNQCLSRFELPTYYKDPIPHVSIASSLGE 213          
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: A0A8B9V065_9AVES (U6 snRNA phosphodiesterase n=6 Tax=Galloanserae TaxID=1549675 RepID=A0A8B9V065_9AVES)

HSP 1 Score: 105 bits (261), Expect = 7.260e-23
Identity = 65/209 (31.10%), Postives = 99/209 (47.37%), Query Frame = 1
Query:   19 ERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGDVS 645
            E R AE+RA +   VR FPHERGNW THV++P      F  + +  V+H R                                               ++ +    + H+SLS++ VLR H I PFV+ LKE + S   F   V     V  N++K+R+F+ L V  G   +L+L+++VD +M  F  P +Y+DP  H+S+A  +GD++
Sbjct:    8 EERGAEDRAKHGGRVRCFPHERGNWATHVYLPYKVQEEFLELLDLLVSHAR---------------------------------------------TYVSSLTAMEEFHISLSQSVVLRYHWINPFVQSLKERLASYDRFFC-VANQMKVYTNQNKTRTFIGLEVSAGHFQLLELVSEVDKVMEEFDLPTFYKDPSFHISLAWCVGDLT 170          
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: A0A6J3DQK9_AYTFU (U6 snRNA phosphodiesterase n=14 Tax=Anseriformes TaxID=8826 RepID=A0A6J3DQK9_AYTFU)

HSP 1 Score: 105 bits (261), Expect = 2.100e-22
Identity = 65/209 (31.10%), Postives = 99/209 (47.37%), Query Frame = 1
Query:   19 ERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGDVS 645
            E R AE+RA +   VR FPHERGNW THV++P      F  + +  V+H R                                               ++ +    + H+SLS++ VLR H I PFV+ LKE + S   F   V     V  N++K+R+F+ L V  G   +L+L+++VD +M  F  P +Y+DP  H+S+A  +GD++
Sbjct:   56 EERGAEDRAKHGGRVRCFPHERGNWATHVYLPYKVQEEFLELLDLLVSHAR---------------------------------------------TYVSSLTAMEEFHISLSQSVVLRYHWINPFVQSLKERLASYDRFFC-VANQMKVYTNQNKTRTFIGLEVSAGHFQLLELVSEVDKVMEEFDLPTFYKDPSFHISLAWCVGDLT 218          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRL4_ECTSI8.470e-10779.51U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus si... [more]
A0A6H5K6W9_9PHAE2.910e-9857.51U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp... [more]
G4YH94_PHYSP3.730e-2535.07U6 snRNA phosphodiesterase n=1 Tax=Phytophthora so... [more]
D0MXX8_PHYIT8.310e-2534.76U6 snRNA phosphodiesterase n=2 Tax=Phytophthora in... [more]
A0A836CMF3_9STRA1.840e-2433.33U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema min... [more]
A0A4D9D6D2_9STRA2.410e-2434.86U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochlorops... [more]
A0A8K1FRB5_PYTOL7.160e-2434.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2QD81_PHYPN3.210e-2333.33U6 snRNA phosphodiesterase n=6 Tax=Phytophthora pa... [more]
A0A8B9V065_9AVES7.260e-2331.10U6 snRNA phosphodiesterase n=6 Tax=Galloanserae Ta... [more]
A0A6J3DQK9_AYTFU2.100e-2231.10U6 snRNA phosphodiesterase n=14 Tax=Anseriformes T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8416contigL-elsbetiae_contig8416:2..2661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.0
Seed ortholog evalue4.6e-60
Seed eggNOG ortholog2880.D7FRL4
Preferred nameUSB1
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0008408,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0030097,GO:0030099,GO:0030154,GO:0030223,GO:0030851,GO:0031123,GO:0031323,GO:0032501,GO:0032502,GO:0034470,GO:0034472,GO:0034477,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043628,GO:0044237,GO:0044238,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045171,GO:0046483,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1990838
EggNOG free text desc.U6 snRNA 3'-end processing
EggNOG OGsKOG3102@1,KOG3102@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionU6 snRNA phosphodiesterase Usb1
Ec32 orthologEc-12_002600.1
Exons5
Model size1135
Cds size747
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816924.052108-UTR-L-elsbetiae_contig8416:1..2481622816924.052108-UTR-L-elsbetiae_contig8416:1..248Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8416 2..248 -
1691683915.9697955-UTR-L-elsbetiae_contig8416:1..2481691683915.9697955-UTR-L-elsbetiae_contig8416:1..248Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8416 2..248 -
1622816924.111462-UTR-L-elsbetiae_contig8416:2341..23671622816924.111462-UTR-L-elsbetiae_contig8416:2341..2367Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8416 2342..2367 -
1691683916.034851-UTR-L-elsbetiae_contig8416:2341..23671691683916.034851-UTR-L-elsbetiae_contig8416:2341..2367Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8416 2342..2367 -
1622816924.1214728-UTR-L-elsbetiae_contig8416:2546..26611622816924.1214728-UTR-L-elsbetiae_contig8416:2546..2661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8416 2547..2661 -
1691683916.0456526-UTR-L-elsbetiae_contig8416:2546..26611691683916.0456526-UTR-L-elsbetiae_contig8416:2546..2661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8416 2547..2661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816924.0662513-CDS-L-elsbetiae_contig8416:248..5391622816924.0662513-CDS-L-elsbetiae_contig8416:248..539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8416 249..539 -
1691683915.9831326-CDS-L-elsbetiae_contig8416:248..5391691683915.9831326-CDS-L-elsbetiae_contig8416:248..539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8416 249..539 -
1622816924.0809422-CDS-L-elsbetiae_contig8416:871..10341622816924.0809422-CDS-L-elsbetiae_contig8416:871..1034Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8416 872..1034 -
1691683915.994056-CDS-L-elsbetiae_contig8416:871..10341691683915.994056-CDS-L-elsbetiae_contig8416:871..1034Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8416 872..1034 -
1622816924.0912085-CDS-L-elsbetiae_contig8416:1390..15571622816924.0912085-CDS-L-elsbetiae_contig8416:1390..1557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8416 1391..1557 -
1691683916.0043705-CDS-L-elsbetiae_contig8416:1390..15571691683916.0043705-CDS-L-elsbetiae_contig8416:1390..1557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8416 1391..1557 -
1622816924.1013908-CDS-L-elsbetiae_contig8416:2215..23411622816924.1013908-CDS-L-elsbetiae_contig8416:2215..2341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8416 2216..2341 -
1691683916.0210607-CDS-L-elsbetiae_contig8416:2215..23411691683916.0210607-CDS-L-elsbetiae_contig8416:2215..2341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8416 2216..2341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8416.17428.1prot_L-elsbetiae_contig8416.17428.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8416 249..2341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8416.17428.1

>prot_L-elsbetiae_contig8416.17428.1 ID=prot_L-elsbetiae_contig8416.17428.1|Name=mRNA_L-elsbetiae_contig8416.17428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
MAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYPEKIRATSTGK
TDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFI
ASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEY
YEDPVVHVSVASVLGDVSTYVGSSSEGAPSPLAARVASGAPKSAGVGEGS
LGGDDSVDDSSGEEKDEEDVPSEICLPVSAVLCKAGTTCFEAPLVAGR*
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mRNA from alignment at L-elsbetiae_contig8416:2..2661-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8416.17428.1 ID=mRNA_L-elsbetiae_contig8416.17428.1|Name=mRNA_L-elsbetiae_contig8416.17428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2660bp|location=Sequence derived from alignment at L-elsbetiae_contig8416:2..2661- (Laminarionema elsbetiae ELsaHSoW15)
GAGTACGACCTTGCTACTGAGCGACGGCGAGCAGAGGAGCGGGCAGGGAA CACCCAGTGGGTTCGACGGTTTCCACACGAGAGGGGAAACTGGCCAACGC ACGTCTTTATTCCAGGTTTGTTCAGCTCTCTAGGCGCACATACGTATGTA TACGCCGCCAATCTCAAGCAGCTGGATACGCATTGAAACCCGCCCTTCTC TGGAAAGAGCGTGAACGTATGCGGAGTATATGTACGCATTCAACCAGTTC CCATACGCACGCTCTGCTCCCCCCCCCCCTGTCCCCTGCTGCCGTGCCCC ATTCTGCATCGTTCAGAAGCATGGCAGAGGCGAGCGTTGCGCACTTCCGG GAAAAGCTGGCGGACGCATGGCGAGAACGGCACGGCGGCCAAGTCGGGAA AGGCGGAAAGAAACGCGGCAGGGACGGGCGACGTTATCCCGAGAAAGTGA GGGCCTGTCACTCCAGCGGGATCCTTCCATTGGTGTAGACTAAAAGCTTT TTCAAGGGAGCTAGTCTACATATGTAGCTCATAATGCTTATGTATCTACA TACTCTCCAAGGCACCGGCTGGTTTCCGTTGAAATCGGGGAGGTCGCGGT TTACCATGCAGGGGGTGCGGACTGCTGTTTTCCGGACCGCCTGTGAACGG ATTTGCGGCTGTCTGCCCCACCGCGCGACCAAAGAGCCCCGCCACCACCG CAGCGGTGGGTACTGCCGTTTTCGGCAAAGGCTGGTGTCGCAAAGAGTGC CTCGGGGACACTTGTGTGTGTGTCGTGTATCCTCCCATCTATTATGGATG CAAGTCTTCACCACCTTCCGGCATATGTTTGACGAAAATAGCAGCCGGGG TCACACAGAAAGTTGTTTTCTTCTCCATCTTTCTCCTGTTGTGCTTGCAT TCGATCTCTTACTCGACGTGGATTCAGCAGCGATTTCCCCTTAGGTTGTG TGTGCTTTCTCGAGAACTTCCGCGCTTTCCGCTCCGAGACCGCGGTTCAT TTGGGTATGTAATACGTCGCAGTCTTATTGGAGACCCGCACGCGCCCACC AACGATCCCAACGCAATGTCGGTTACGAATCATTCTATGTACATATGTAT ACAGATTCGTGCGACATCAACAGGGAAGACCGATCCCCCGGAAGTGGTGA TAAATGATATGGACCCTGCCGGGCAGCAGCACCTCAGCCTCTCGAAAACG ACAGTGCTGCGAGCTCATCAGATCGAGCCGTTCGTTGAGGGGCTCAAAGA AGCCGTCAAGTCTTCGCGCAGGTGGGGAAATAGCTATTTCTATATACGGC AAGTAAGAATGCACTTTAGTTTTTGGTGCCACAAGCACCCCGGGGAGCAA GGTGTGCTATTCCGGCCGGGCGTGGAGTTGAGACATGGTACGTGCTAGCT TTGCTTTCACCTGACTTGCAATTCGCACCGTCCATCTGTAGAAACAAAGT AAGTTCGTCTGCCTGAGGAGAGGCAAGAGCCAATATCATCTTGTTCCGAC GCGTGCCACTTTTTTTCATGCAGACACTGGCGTGTGCCGTCCGCAACCGA ATCTACTTGCCGAGTGATATCTACGTTTTGTTGTTGTTGTTGTTGTCTCC CGCGCTGATTTCTCTGTTTCTTCTCAGCTTCATCGCGTCCGTCGTCCCCG GCTACGACGTGCTCGTCAACGAAGACAAGTCGCGTTCCTTTGTCTGCCTC AGGGTTAGGGGCGGACGGCAGATGATCCTCAAGCTCATCGCCAAGGTGGA CCCGTTGATGCGAAGGTTCAAGCAGCCAGAGTACTACGAGGTAATCCTGC GCTCGTATGTGGCGGCGCCGACTGTGCACTGCACGCTCGGTTGCCTTCCG GTTGCAGTAACCTCAAATAAATGCAGATCTCCCCGAAAGCGGGGTTTATG ACCATAATTATACAAAATCTTGCGCAGTGTTCTCCTTTGGGTGTGTACGA GATGCGCAACAAGCATCAACCGAAGATTTACGGAGCGATGCTTCGTAAAA CAAGCCTACAACACGCAACTGCGGTTGGCGGCACGCTTCTAAATCGCGGC CGGGACCCTTTCATGATCCCCGGGTCGCCAATCGAGAGAGCCCCCCGCCT TCGCGCGCCTCGCCTTACGCAGGACCCCGTGGTACACGTTAGCGTGGCAT CAGTATTAGGTGACGTCAGCACGTACGTCGGCTCTTCGTCGGAAGGAGCG CCCAGCCCTTTGGCGGCGCGAGTGGCCAGCGGGGCCCCGAAATCGGCAGG TGTCGGTGAGGGAAGTCTAGGCGGCGACGATAGCGTCGACGACAGCAGCG GCGAAGAGAAGGACGAGGAGGACGTTCCGTCAGAGATTTGTCTCCCGGTT AGCGCTGTGCTGTGCAAGGCAGGCACAACCTGCTTCGAGGCGCCGTTAGT GGCAGGTCGTTGACCAGGAGGGGGAGGGTGACGCTCGTCGTTGGGACGGT GAAGCTTGCATCACAGCATGCAAGTAGCGTCTTCAGTTCGGTCGACGTTG GGTGGTCTTTTAAAACAAAACAAAGAATCAAAGATGGAACCTAACCCATA CTAGAGCCAGAGACTCGATATGGGGTTCAAACGGTATTCCATACAGAGAC GTAATATTTGGCGAAGCGAGCAGAAAAAACAACCTAAATTTCAGAAGAAT TCAACATCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8416:2..2661-

>mRNA_L-elsbetiae_contig8416.17428.1 ID=mRNA_L-elsbetiae_contig8416.17428.1|Name=mRNA_L-elsbetiae_contig8416.17428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig8416:2..2661- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGAGGCGAGCGTTGCGCACTTCCGGGAAAAGCTGGCGGACGCATG
GCGAGAACGGCACGGCGGCCAAGTCGGGAAAGGCGGAAAGAAACGCGGCA
GGGACGGGCGACGTTATCCCGAGAAAATGGCAGAGGCGAGCGTTGCGCAC
TTCCGGGAAAAGCTGGCGGACGCATGGCGAGAACGGCACGGCGGCCAAGT
CGGGAAAGGCGGAAAGAAACGCGGCAGGGACGGGCGACGTTATCCCGAGA
AAATTCGTGCGACATCAACAGGGAAGACCGATCCCCCGGAAGTGGTGATA
AATGATATGGACCCTGCCGGGCAGCAGCACCTCAGCCTCTCGAAAACGAC
AGTGCTGCGAGCTCATCAGATCGAGCCGTTCGTTGAGGGGCTCAAAGAAG
CCGTCAAGTCTTCGCGCAGATTCGTGCGACATCAACAGGGAAGACCGATC
CCCCGGAAGTGGTGATAAATGATATGGACCCTGCCGGGCAGCAGCACCTC
AGCCTCTCGAAAACGACAGTGCTGCGAGCTCATCAGATCGAGCCGTTCGT
TGAGGGGCTCAAAGAAGCCGTCAAGTCTTCGCGCAGCTTCATCGCGTCCG
TCGTCCCCGGCTACGACGTGCTCGTCAACGAAGACAAGTCGCGTTCCTTT
GTCTGCCTCAGGGTTAGGGGCGGACGGCAGATGATCCTCAAGCTCATCGC
CAAGGTGGACCCGTTGATGCGAAGGTTCAAGCAGCCAGAGTACTACGAGC
TTCATCGCGTCCGTCGTCCCCGGCTACGACGTGCTCGTCAACGAAGACAA
GTCGCGTTCCTTTGTCTGCCTCAGGGTTAGGGGCGGACGGCAGATGATCC
TCAAGCTCATCGCCAAGGTGGACCCGTTGATGCGAAGGTTCAAGCAGCCA
GAGTACTACGAGGACCCCGTGGTACACGTTAGCGTGGCATCAGTATTAGG
TGACGTCAGCACGTACGTCGGCTCTTCGTCGGAAGGAGCGCCCAGCCCTT
TGGCGGCGCGAGTGGCCAGCGGGGCCCCGAAATCGGCAGGTGTCGGTGAG
GGAAGTCTAGGCGGCGACGATAGCGTCGACGACAGCAGCGGCGAAGAGAA
GGACGAGGAGGACGTTCCGTCAGAGATTTGTCTCCCGGTTAGCGCTGTGC
TGTGCAAGGCAGGCACAACCTGCTTCGAGGCGCCGTTAGTGGCAGGTCGT
TGAGACCCCGTGGTACACGTTAGCGTGGCATCAGTATTAGGTGACGTCAG
CACGTACGTCGGCTCTTCGTCGGAAGGAGCGCCCAGCCCTTTGGCGGCGC
GAGTGGCCAGCGGGGCCCCGAAATCGGCAGGTGTCGGTGAGGGAAGTCTA
GGCGGCGACGATAGCGTCGACGACAGCAGCGGCGAAGAGAAGGACGAGGA
GGACGTTCCGTCAGAGATTTGTCTCCCGGTTAGCGCTGTGCTGTGCAAGG
CAGGCACAACCTGCTTCGAGGCGCCGTTAGTGGCAGGTCGTTGA
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