mRNA_L-elsbetiae_contig8416.17428.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: D7FRL4_ECTSI (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL4_ECTSI) HSP 1 Score: 324 bits (831), Expect = 8.470e-107 Identity = 163/205 (79.51%), Postives = 181/205 (88.29%), Query Frame = 1 Query: 1 EYDLATERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHG-GQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVH 612 EYDLATERRRAEERAGN +WVRRFPHERGNWPTHVFIPVP+SA+F+SMAEASV+HFR++LA AWRE HG + GKGGKKR RDGR+ + A+S GK DPPEVV+NDMDP+G+QHLSLSKTT LRAHQI PFV GLKEAVKSSRSF AS V GYDVLVNEDK+RSFVCLRVRGGRQM+L LIAKVDPLMRRFKQ EYYE ++H Sbjct: 54 EYDLATERRRAEERAGNIRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWREGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQINPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLSLIAKVDPLMRRFKQSEYYEVIIMH 258
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: A0A6H5K6W9_9PHAE (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W9_9PHAE) HSP 1 Score: 304 bits (778), Expect = 2.910e-98 Identity = 180/313 (57.51%), Postives = 206/313 (65.81%), Query Frame = 1 Query: 1 EYDLATERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHG-GQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGDVSTYVGSSSEGAPSPLAARVASGAPKSAGVGEGSLGGDDSVDDSSGEEK-----------------DEEDVPSEICLPVSAVLCKAGTTCFEAPLVAGR 885 EYDLATERRRAEERAGN WVRRFPHERGNWPTHVFIPVP+S++F+SMAEASV+HFR++LA AWR+RHG + GKGG+KR DGRR + A+S GK DPPEVV+N+MDP+G+QHLSLSKTT LRAHQI+PFV+GLK+AVKSSR RVRGGR+M+L LIAKVDPLMRRFKQ YYE+P+VHVSVASVLGDVSTYV SSS PS +DVPSE+CL V V+CKAGTT FEAPL AGR Sbjct: 43 EYDLATERRRAEERAGNIPWVRRFPHERGNWPTHVFIPVPNSSAFKSMAEASVSHFRQRLAAAWRDRHGRAEGGKGGRKRTSDGRRRSNQASASSAGKLDPPEVVMNNMDPSGRQHLSLSKTTALRAHQIDPFVQGLKDAVKSSR-------------------------RVRGGRKMVLGLIAKVDPLMRRFKQSGYYEEPIVHVSVASVLGDVSTYVSSSSR-VPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISSDDVPSEVCLTVDVVMCKAGTTYFEAPL-AGR 328
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: G4YH94_PHYSP (U6 snRNA phosphodiesterase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH94_PHYSP) HSP 1 Score: 112 bits (279), Expect = 3.730e-25 Identity = 74/211 (35.07%), Postives = 109/211 (51.66%), Query Frame = 1 Query: 10 LATERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYP-EKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGD 639 + T+R+R +E QW R FPH GNWP+HV I +P + R MA+ ++ +E + G + P E++R + T G HLSLS+ +L QIE FV+ L A+K + F ++ G VLVN+DK+RSF+ LRV G Q +++ VD + FKQP YY+DP+ HVS+AS +G+ Sbjct: 43 IGTKRKRPDE----PQWKRAFPHVDGNWPSHVRIDIPVTEELREMAKCAIDRAQELV-------------------GENVTLVPFEELRLGESSST----------GSGGGLHLSLSRAFILTYDQIEGFVDSLHTALKWRQRFSVTL-EGALVLVNDDKTRSFLALRVSAGAQQFNQVLRCVDQCLACFKQPTYYQDPIPHVSIASSMGE 219
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: D0MXX8_PHYIT (U6 snRNA phosphodiesterase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MXX8_PHYIT) HSP 1 Score: 110 bits (276), Expect = 8.310e-25 Identity = 73/210 (34.76%), Postives = 109/210 (51.90%), Query Frame = 1 Query: 10 LATERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGD 639 + T+R+R++E+ QW R FPH GNWP+HV I +P + R +A ++ +E + DA E++ TSTG TD HLSLS+ VL QI FV+ L+ A+K + F ++ VL N++K+RSF+ LRV G Q +++ VD + R +QP YY+DP+ HVS+AS LG+ Sbjct: 38 VGTKRKRSDEQ----QWKRAFPHVDGNWPSHVRIDIPVTHELRELARHAIERAQEIVGDAV------------------AMLAFEELGLTSTGATD-------------YLHLSLSRPFVLTYDQINGFVDSLRAALKWQQRFSVTLRRAL-VLANDEKTRSFLALRVGEGEQQFTQVLRCVDQCLSRVEQPTYYKDPIPHVSIASSLGE 211
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: A0A836CMF3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF3_9STRA) HSP 1 Score: 113 bits (282), Expect = 1.840e-24 Identity = 80/240 (33.33%), Postives = 104/240 (43.33%), Query Frame = 1 Query: 64 RRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQ----------------------------VGKGGKKRGRDGRRYPEKIRATSTG------------------------KTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVAS 627 R PHERG WP+HV I VP SA R ++ A++ H +L A + + VG G DG R G P AG HLSLS+ LRAHQ+EPF L+ A +R+F V Y+VLVN+D++RSFVCL+V GG IL LI +V+ + F+Q YYEDP +H+SVAS Sbjct: 24 RAAPHERGRWPSHVHIAVPPSAELRELSAAAIRHLEARLLRAAQAQQAXXXXXXXXXXXXXXXXXXXAPRVIPHDAFAVGGSSANGGGDGLRAXXXXXXXXXGGRGNSCXXXXXXXXXXXAAAXXXXXXXXPRQGXEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 263
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: A0A4D9D6D2_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6D2_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.410e-24 Identity = 76/218 (34.86%), Postives = 116/218 (53.21%), Query Frame = 1 Query: 43 AGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYP--------EKIRATSTGKTDPPEV--VINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVV------PGYDVLVNEDKSRSFVCLRVR-GGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGDVS 645 A W+R PH GNW THV+I VP++ MA+A V R +L + GG+ G KK + P E G+ + E + +D + +GQ HLSLS+T LR++ +EPFV L +A+ +R+F + G +LVN+D+SRSFV + V GG + +++ VD ++ +++QP YY + H+SVA+V GDVS Sbjct: 132 ASTVDWIRSVPHFEGNWATHVYITVPNTREVVRMAKACVQEARRRLRNVLGTETGGEEGWQEKKELVENDLNPVPSADSSDEDXXXXGAGEEEGRESRHLPSDQETSGQ-HLSLSRTVYLRSYHMEPFVADLGKALAWARAFTFRLAWRRGRGGGEGLLVNDDRSRSFVTVPVEEGGEGRLRQVVESVDEVLVKYRQPPYYRGALFHISVAAVKGDVS 348
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: A0A8K1FRB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRB5_PYTOL) HSP 1 Score: 108 bits (271), Expect = 7.160e-24 Identity = 68/200 (34.00%), Postives = 99/200 (49.50%), Query Frame = 1 Query: 43 AGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQ-HLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGD 639 A + +W R FPH GNWP+HV I VP + ++ + + + + D EV + M ++ H+SLS+ VL QIEPFVE L+ A+K R F A V VLVN++++RSF+ L++ G+Q +K + VD M+ F+ P YYEDP+ HVS+AS LGD Sbjct: 42 ASSVRWTRAFPHVEGNWPSHVKINVPLTPELQTHCQRVITATQRFVGD---------------------------------------EVELIPMASEEEELHMSLSRPFVLTYEQIEPFVEALRAALKWRRRF-ALTVEEPTVLVNDERTRSFLALQLDAGKQEFVKTVRCVDQCMQDFQLPTYYEDPIPHVSIASALGD 201
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: W2QD81_PHYPN (U6 snRNA phosphodiesterase n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QD81_PHYPN) HSP 1 Score: 107 bits (266), Expect = 3.210e-23 Identity = 70/210 (33.33%), Postives = 109/210 (51.90%), Query Frame = 1 Query: 10 LATERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGD 639 + T+R+R++ER QW R FPH GNWP+HV I VP S R +A ++ ++ + +A + G ++P N + HLSLS+ VL +QI FV+ L+ A+K + F ++ VLVN++K+RSF+ LRV G Q +++ V+ + RF+ P YY+DP+ HVS+AS LG+ Sbjct: 38 VGTKRKRSDER----QWKRAFPHVDGNWPSHVRIDVPVSDELRELARYAIERAQDIVGEA-----------------------VSLVPFEELGLSEPSTEANNTL------HLSLSRPFVLTYNQINGFVDSLRAALKWQQRFNVTLRRAL-VLVNDEKTRSFLALRVDEGEQQFTQVLRCVNQCLSRFELPTYYKDPIPHVSIASSLGE 213
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: A0A8B9V065_9AVES (U6 snRNA phosphodiesterase n=6 Tax=Galloanserae TaxID=1549675 RepID=A0A8B9V065_9AVES) HSP 1 Score: 105 bits (261), Expect = 7.260e-23 Identity = 65/209 (31.10%), Postives = 99/209 (47.37%), Query Frame = 1 Query: 19 ERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGDVS 645 E R AE+RA + VR FPHERGNW THV++P F + + V+H R ++ + + H+SLS++ VLR H I PFV+ LKE + S F V V N++K+R+F+ L V G +L+L+++VD +M F P +Y+DP H+S+A +GD++ Sbjct: 8 EERGAEDRAKHGGRVRCFPHERGNWATHVYLPYKVQEEFLELLDLLVSHAR---------------------------------------------TYVSSLTAMEEFHISLSQSVVLRYHWINPFVQSLKERLASYDRFFC-VANQMKVYTNQNKTRTFIGLEVSAGHFQLLELVSEVDKVMEEFDLPTFYKDPSFHISLAWCVGDLT 170
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Match: A0A6J3DQK9_AYTFU (U6 snRNA phosphodiesterase n=14 Tax=Anseriformes TaxID=8826 RepID=A0A6J3DQK9_AYTFU) HSP 1 Score: 105 bits (261), Expect = 2.100e-22 Identity = 65/209 (31.10%), Postives = 99/209 (47.37%), Query Frame = 1 Query: 19 ERRRAEERAGNTQWVRRFPHERGNWPTHVFIPVPHSASFRSMAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYPEKIRATSTGKTDPPEVVINDMDPAGQQHLSLSKTTVLRAHQIEPFVEGLKEAVKSSRSFIASVVPGYDVLVNEDKSRSFVCLRVRGGRQMILKLIAKVDPLMRRFKQPEYYEDPVVHVSVASVLGDVS 645 E R AE+RA + VR FPHERGNW THV++P F + + V+H R ++ + + H+SLS++ VLR H I PFV+ LKE + S F V V N++K+R+F+ L V G +L+L+++VD +M F P +Y+DP H+S+A +GD++ Sbjct: 56 EERGAEDRAKHGGRVRCFPHERGNWATHVYLPYKVQEEFLELLDLLVSHAR---------------------------------------------TYVSSLTAMEEFHISLSQSVVLRYHWINPFVQSLKERLASYDRFFC-VANQMKVYTNQNKTRTFIGLEVSAGHFQLLELVSEVDKVMEEFDLPTFYKDPSFHISLAWCVGDLT 218 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8416.17428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8416.17428.1 >prot_L-elsbetiae_contig8416.17428.1 ID=prot_L-elsbetiae_contig8416.17428.1|Name=mRNA_L-elsbetiae_contig8416.17428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp MAEASVAHFREKLADAWRERHGGQVGKGGKKRGRDGRRYPEKIRATSTGKback to top mRNA from alignment at L-elsbetiae_contig8416:2..2661- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8416.17428.1 ID=mRNA_L-elsbetiae_contig8416.17428.1|Name=mRNA_L-elsbetiae_contig8416.17428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2660bp|location=Sequence derived from alignment at L-elsbetiae_contig8416:2..2661- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8416:2..2661- >mRNA_L-elsbetiae_contig8416.17428.1 ID=mRNA_L-elsbetiae_contig8416.17428.1|Name=mRNA_L-elsbetiae_contig8416.17428.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig8416:2..2661- (Laminarionema elsbetiae ELsaHSoW15)back to top |