mRNA_L-elsbetiae_contig841.17425.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig841.17425.1
Unique NamemRNA_L-elsbetiae_contig841.17425.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig841.17425.1 vs. uniprot
Match: D8LNJ8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ8_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 6.870e-5
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:   50 MVDVRSRRCAHNGCTKWPSY-VKTGGKVEYCCDHAEDGTV 166
            M+DV S+RCAH+GC KWPSY +    K E+C +HA  G V
Sbjct:    1 MIDVVSKRCAHSGCNKWPSYGMPPSKKAEFCANHARPGMV 40
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig841.17425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNJ8_ECTSI6.870e-555.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig841contigL-elsbetiae_contig841:30642..32109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size788
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig841.17425.1prot_L-elsbetiae_contig841.17425.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig841 30691..31212 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816923.7702901-UTR-L-elsbetiae_contig841:30641..306901622816923.7702901-UTR-L-elsbetiae_contig841:30641..30690Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig841 30642..30690 +
1691683915.755595-UTR-L-elsbetiae_contig841:30641..306901691683915.755595-UTR-L-elsbetiae_contig841:30641..30690Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig841 30642..30690 +
1622816923.791076-UTR-L-elsbetiae_contig841:31212..314081622816923.791076-UTR-L-elsbetiae_contig841:31212..31408Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig841 31213..31408 +
1691683915.77708-UTR-L-elsbetiae_contig841:31212..314081691683915.77708-UTR-L-elsbetiae_contig841:31212..31408Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig841 31213..31408 +
1622816923.8030434-UTR-L-elsbetiae_contig841:32088..321091622816923.8030434-UTR-L-elsbetiae_contig841:32088..32109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig841 32089..32109 +
1691683915.785806-UTR-L-elsbetiae_contig841:32088..321091691683915.785806-UTR-L-elsbetiae_contig841:32088..32109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig841 32089..32109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816923.7808383-CDS-L-elsbetiae_contig841:30690..312121622816923.7808383-CDS-L-elsbetiae_contig841:30690..31212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig841 30691..31212 +
1691683915.7646606-CDS-L-elsbetiae_contig841:30690..312121691683915.7646606-CDS-L-elsbetiae_contig841:30690..31212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig841 30691..31212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig841.17425.1

>prot_L-elsbetiae_contig841.17425.1 ID=prot_L-elsbetiae_contig841.17425.1|Name=mRNA_L-elsbetiae_contig841.17425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
MVDVRSRRCAHNGCTKWPSYVKTGGKVEYCCDHAEDGTVDVKNKRCAQRD
CRKQPSYGLAGSGKREFCKDHAREAYFTQVMLPKEASPPPAAGVVEAQRQ
LVIAPPPLLMVPAKSAAEAAPVRQQRSKLPRLAAGRPTSEPATPATRARP
PPHSQPQQKLLLQARPLPWGPSW*
back to top

mRNA from alignment at L-elsbetiae_contig841:30642..32109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig841.17425.1 ID=mRNA_L-elsbetiae_contig841.17425.1|Name=mRNA_L-elsbetiae_contig841.17425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1468bp|location=Sequence derived from alignment at L-elsbetiae_contig841:30642..32109+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCTGGCGGCAAGGCAGAGTATTGTCGTGACCATGCCGAGGACAGTATA
TGGTGGATGTGAGGAGCAGGAGATGTGCCCACAACGGTTGCACCAAGTGG
CCGTCATACGTCAAGACTGGCGGTAAGGTGGAATACTGCTGTGACCATGC
TGAGGATGGGACGGTGGATGTGAAGAACAAGAGGTGTGCCCAACGTGACT
GCCGCAAGCAGCCATCATACGGGTTGGCAGGCAGCGGGAAGCGCGAGTTC
TGCAAAGATCATGCAAGGGAGGCATATTTTACCCAGGTAATGCTGCCCAA
AGAAGCAAGCCCCCCGCCGGCGGCAGGGGTGGTGGAAGCTCAGCGGCAGT
TGGTGATAGCCCCGCCCCCCCTACTGATGGTGCCGGCGAAAAGCGCGGCA
GAAGCGGCGCCCGTTCGTCAACAGCGATCGAAACTTCCTCGGCTAGCGGC
CGGCAGGCCAACAAGCGAGCCTGCCACACCGGCAACACGGGCACGACCCC
CACCCCACTCGCAGCCGCAGCAAAAACTCCTCCTGCAAGCTCGGCCTCTG
CCGTGGGGACCGAGTTGGTAGACGTTCGCACGATAGAACCCACGGAAACT
TCAGGAATCGCAGCACCATCAAGAAGAGCTGGACTGGCCACCACCCCTGC
CAGGGTTGGTGCATCGTCGCGGGCGGCGTCGGGTGCCGGGGGTGGCGTGC
AGGACCGGAGTGGTGATCCCTTCCCCACTGGCGTCCGGCAGCAGCTTGGA
TCCCGCCGCGGCAAGAGGTACGTCCGCGCAAAAGCAACTGCATGAAATCG
TGAAGTATTATCTGCGCTTTTTATTTCCTTTCGTGCCCGGGGTGCGGTTT
GATCACCACCGGTTGGGTGTCTGGTTTCGTTGCCGGTGCTTACCCCCCTT
GTTTGCCAATGCAACACAGCGCTTAGCCTCTTAGTGCCCGCCAACAGTGT
TCTTGTTTGGCTGAAAGGCGAACGCACTGCTGTCGCCCTGCTGGTTCGGC
GTGCACACACCGCCGATTTGGTGGGAGGTCATAGCCCCGTCAAACAAAGC
CCACGGGGGACCCTCTGATTATTGCTTCGTTTGAGCCTCAACCCGTTGTG
TGTCCGTGCGCGAGCCATTTGGGCCTCCTAGTTTACACCCCGACGATTGA
CATCTGTTGTTTTTCCTTTGCCCATGGAGATGCAGTATCTTGCTCGACGC
CCTCGCGGTAGTGGGGCACGGTGCACTTGCAGGCAGTTCAGTTGTGCAAC
ATATCTATCCTTTGGCGCTCGCGGTCGTGGCACACAAAGCGCCACCGCAT
CCCGGAAAATCATGGCTGTTTTGTTCCAATCACCTCCTGAGGGCCGGATT
TAAATCCCTTTTCCGGCTTGCCTCGCTGCTTCCTCCAACAACGCGCTCGC
TCTCTCCCTCTGATGACGAAACTGTTTCGCGGCGGTGGCGAGAGCAGATC
GGAGGAGGAAGAGCAGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig841:30642..32109+

>mRNA_L-elsbetiae_contig841.17425.1 ID=mRNA_L-elsbetiae_contig841.17425.1|Name=mRNA_L-elsbetiae_contig841.17425.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig841:30642..32109+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGATGTGAGGAGCAGGAGATGTGCCCACAACGGTTGCACCAAGTG
GCCGTCATACGTCAAGACTGGCGGTAAGGTGGAATACTGCTGTGACCATG
CTGAGGATGGGACGGTGGATGTGAAGAACAAGAGGTGTGCCCAACGTGAC
TGCCGCAAGCAGCCATCATACGGGTTGGCAGGCAGCGGGAAGCGCGAGTT
CTGCAAAGATCATGCAAGGGAGGCATATTTTACCCAGGTAATGCTGCCCA
AAGAAGCAAGCCCCCCGCCGGCGGCAGGGGTGGTGGAAGCTCAGCGGCAG
TTGGTGATAGCCCCGCCCCCCCTACTGATGGTGCCGGCGAAAAGCGCGGC
AGAAGCGGCGCCCGTTCGTCAACAGCGATCGAAACTTCCTCGGCTAGCGG
CCGGCAGGCCAACAAGCGAGCCTGCCACACCGGCAACACGGGCACGACCC
CCACCCCACTCGCAGCCGCAGCAAAAACTCCTCCTGCAAGCTCGGCCTCT
GCCGTGGGGACCGAGTTGGTAGATGGTGGATGTGAGGAGCAGGAGATGTG
CCCACAACGGTTGCACCAAGTGGCCGTCATACGTCAAGACTGGCGGTAAG
GTGGAATACTGCTGTGACCATGCTGAGGATGGGACGGTGGATGTGAAGAA
CAAGAGGTGTGCCCAACGTGACTGCCGCAAGCAGCCATCATACGGGTTGG
CAGGCAGCGGGAAGCGCGAGTTCTGCAAAGATCATGCAAGGGAGGCATAT
TTTACCCAGGTAATGCTGCCCAAAGAAGCAAGCCCCCCGCCGGCGGCAGG
GGTGGTGGAAGCTCAGCGGCAGTTGGTGATAGCCCCGCCCCCCCTACTGA
TGGTGCCGGCGAAAAGCGCGGCAGAAGCGGCGCCCGTTCGTCAACAGCGA
TCGAAACTTCCTCGGCTAGCGGCCGGCAGGCCAACAAGCGAGCCTGCCAC
ACCGGCAACACGGGCACGACCCCCACCCCACTCGCAGCCGCAGCAAAAAC
TCCTCCTGCAAGCTCGGCCTCTGCCGTGGGGACCGAGTTGGTAG
back to top