mRNA_L-elsbetiae_contig8404.17416.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8404.17416.1
Unique NamemRNA_L-elsbetiae_contig8404.17416.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: A0A6H5JCS7_9PHAE (REJ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS7_9PHAE)

HSP 1 Score: 385 bits (989), Expect = 1.750e-116
Identity = 241/474 (50.84%), Postives = 288/474 (60.76%), Query Frame = 1
Query:  145 LRRPQHLILLLADWMSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPPASQTLKRTEGVHQ-----------DAIEDTEDEMAHEHQ------GNEPRARLARWKSSKSR-----------RGWFGNHRDKLAHSSMPTPMRRQGTASPFFAPSAAATVVETTAYKDVMEMQKMLLAVYLPLPILLAMLVSE--------------------------------------------------------------------------VLRVSTKAEEAGGDDHAFLHNMTTSLSLACCVLSALSAFAVVSRNARVMVQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEIQKQYENVLSDLIEGDLVAAWSNPTSQMQNAAEAIQSCFRMHLASQRMVRALEFRTWLHDCRPQRRSMNILAGGAVVTTILCLTYTNMVFAVKFDR 1260
            L R QHL+LLLADWMSAI+LQA+FYGKSQ+GVRQKVEMTVVSAL MLP G+IFPALLRA NTPPASQTLKR   V Q           D ++  ++E  ++ +         P  R ++++ S  R           RG F   RD     + PT   R  + S         T +  T ++DV+ MQK LL VYLPLP+LLAMLVSE                                                                          VLR+S +AE AGGD+HAFLHNM TSLS+AC VL ALSAFAVVSR+AR+MVQTT+FQAVVAPGL LCGVLLY SSASIA GAVLGAA+AL+GSYL+ +Q++ E++L++LIEGDLVAAWS PT +M  AAE +Q C+R+H AS RM RALEF TWLH CR QRR M +LA GA+  TILCL YTNMVFA+KFDR
Sbjct:  950 LTRSQHLVLLLADWMSAILLQAIFYGKSQFGVRQKVEMTVVSALLMLPTGVIFPALLRAGNTPPASQTLKRV-AVRQEEPAGPNHDLYDELQRKQEERVNDFRIALQDGERSPSIRASKFRHSLHRTPRSNARGQIHRGGFSAPRDSPPRKTAPTRFSRSMSTS-----DLKPTGLSNT-FRDVVAMQKTLLLVYLPLPMLLAMLVSELLFTPQRLRLPCCMPVQQQGHGHDVTVGDLARNKCNRSALVSWKTSQNDFCSCSAGFTSSSEMKRRYRVLCKWQVLRISGEAEAAGGDEHAFLHNMVTSLSVACSVLCALSAFAVVSRSARIMVQTTTFQAVVAPGLALCGVLLYSSSASIAAGAVLGAAVALVGSYLVGVQRKCEDILNELIEGDLVAAWSQPTREMHKAAEIVQRCYRIHHASVRMTRALEFHTWLHGCRRQRRGMQVLASGALYITILCLIYTNMVFAIKFDR 1416          
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: D7FJB7_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB7_ECTSI)

HSP 1 Score: 342 bits (876), Expect = 1.150e-100
Identity = 203/353 (57.51%), Postives = 251/353 (71.10%), Query Frame = 1
Query:  145 LRRPQHLILLLADWMSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPPASQTLKRT-------EGVHQDAIEDTEDEMAHEHQGNEPRARLARWKSS---KSRRGWFGNHRDKLAHSSMPTPMRRQGTASP---FFAPSAAATVVETTAYKDVMEMQKMLLAVYLPLPILLAMLVSE-----------------------VLRVSTKAEEAGGDDHAFLHNMTTSLSLACCVLSALSAFAVVSRNARVMVQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEIQKQYENVLSDLIEGDLVAAWSNPTSQMQNAAEAIQSCFRM 1095
            L R QHL+LLLADWMSAI+LQA+FYGKSQ+GVR+KVEMTV+SAL MLP G+IFPALLRA NTPPASQTLKR        EG + D  ++ + +   E + ++ R  L   +SS   +  RG F   RD     + PT        SP   +F+ + A  VV+T AY+DV+ MQK LL VYLPLP+LLAMLVSE                       VLR+S +AE AGGD++AFLHNM TSLS+AC VL ALSAFAVVSR+AR+MVQTT+FQAVVAPGL LCGVL+Y SSASIA GAVLGAA+AL+GSYL+ +Q++YE++L++LIEGDLVAAWS PT +M  AAE +Q C+R+
Sbjct:  888 LTRSQHLVLLLADWMSAILLQAIFYGKSQFGVRKKVEMTVISALLMLPTGVIFPALLRAGNTPPASQTLKRVPVRQEEPEGPNHDLYDELQRKQ--EERVDDFRTALQDARSSAREQMHRGGFSAPRDSPPRKTAPTRFVANVRRSPNEFYFSATNATPVVQTAAYRDVVAMQKTLLLVYLPLPMLLAMLVSEQQGHRHDVTVDDLAQNKCNRSALVLRISREAEAAGGDEYAFLHNMVTSLSVACSVLCALSAFAVVSRSARIMVQTTTFQAVVAPGLALCGVLMYNSSASIAAGAVLGAAVALVGSYLVGVQRKYEDILNELIEGDLVAAWSQPTREMHMAAEIVQRCYRV 1238          
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: D7FJB6_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB6_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 1.900e-95
Identity = 195/322 (60.56%), Postives = 230/322 (71.43%), Query Frame = 1
Query:  145 LRRPQHLILLLADWMSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPPASQTLKRTEGVHQDAIEDTE---DEMAHEHQGNEPRARLARWKSSKSRR-GWFGNHRD--KLAHSSMPTPMRRQGTASPFFAPSAAATVVETTAYKDVMEMQKMLLAVYLPLPILLAMLVSEVLRVSTKAEEAGGDDHAFLHNMTTSLSLACCVLSALSAFAVVSRNARVMVQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEIQKQYENVLSDLIEGDLVAAWSNPTSQMQNAAEAIQSCFR 1092
            L RPQHL+LLL DWMSAI+LQA+FYGKSQ+GV    EM VVSALFMLPAG++FPALLR ANTPPASQTL+R   + +      E   D    E +  +        +   +RR G+   HR   K +   M T +  QGTASPF  P   A VVET AY DV+EMQK LL VY+PLPILLAMLVSEVL VS +AE  GGD++A LHNM TSLSLA  VL  +SAF+V+SR+AR M + T+FQ VVAPG+ LCGVLL GSS  IA GAVLGA I L+G+YL+ IQ++YE +LSDLIEGDLVAAWSNPT +M  AAE IQ CFR
Sbjct: 1101 LTRPQHLVLLLTDWMSAIVLQALFYGKSQFGV----EMAVVSALFMLPAGVVFPALLRVANTPPASQTLQRPVSLEEQPERTAEYRTDRRQVEQEKTDDGFLATLQQGDATRRVGFQEQHRPPRKASPIRMFTAIEAQGTASPFLKPKPNAAVVETAAYLDVVEMQKALLLVYVPLPILLAMLVSEVLSVSREAEADGGDEYAVLHNMVTSLSLASSVLCMVSAFSVMSRSARTMRKATAFQGVVAPGMALCGVLLLGSSVFIAAGAVLGAVITLVGAYLVGIQRKYEEILSDLIEGDLVAAWSNPTREMHKAAETIQCCFR 1418          
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: A0A6H5JGV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV2_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 1.170e-81
Identity = 170/393 (43.26%), Postives = 232/393 (59.03%), Query Frame = 1
Query:  145 LRRPQHLILLLADWMSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPPASQTLKRTEGVHQDAIEDTEDEMAHEHQG----------NEPRARLARWKSSKSRRGWFGNHRDKLAHSSMPTPMRRQGTASPFFAPSAAATVVE---------TTAYKDVMEMQKMLLAVYLPLPI-LLAMLVSEVLRVSTKAEEAG-GDDHAFLHNMTTSLSLACCVLSALSAFAVVSRNARVMVQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEIQKQYENVLSDLIEGDLVAAWSNPTSQMQNAAEAIQSCFRMHLASQRMVRALEFRTWLHDCRPQRRSMNILAGGAVVTTILCLTYTNMVFAVKFDR 1260
            L R QHL+LLLADWMSA+ LQAVFYGKSQ+ +R K +MTV +ALFM+P  L+FP LLR ANTPP S+T+ +      DA    E+   H   G          N PR       S+K      G     +     PT  RR+      F  S   TVVE         T  Y+D++  Q++++A+ L LP+ + A+ V  V+ V+ +A  +  GD +A +HN+T SL + C +L   SA+ V +     M +  +FQA+VAPGL+LCG +L+ S  ++ATGA+L     L+ SYL  +Q++ E VL  + E DL+ AWSNPT  M +AA  +Q  FRMHLA+ RM RA+EF TWL++C+PQR  M IL    +  TILCL YTN+VFA +FDR
Sbjct:  118 LTRSQHLVLLLADWMSAVALQAVFYGKSQFSIRNKAQMTVTTALFMIPTALVFPFLLRKANTPPISETVIKAGRSRHDAPF-KENSRRHAQHGVLGHHHPPDKNTPRDEQQPALSTKRSSVIRGTVVTNITLQDPPTLARRRERKPSAFVQSP--TVVESISGVSANKTAVYRDIIMWQRVIVALCLILPVWMAAVFVPMVILVALEASSSPEGDPNALVHNLTASLGIVCSLLCVYSAYGVGAHRVIAMTKAMAFQAIVAPGLVLCGGMLFDSDTALATGAMLSGLACLLCSYLTRLQRKNELVLKGVCEQDLITAWSNPTLDMHSAAAVVQRSFRMHLAATRMARAVEFSTWLNNCKPQRSYMYILVNSIIYVTILCLAYTNLVFAARFDR 507          
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: A0A6H5JVI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI0_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 7.260e-57
Identity = 137/392 (34.95%), Postives = 193/392 (49.23%), Query Frame = 1
Query:  187 MSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPPASQTLKRTEGVHQDAIEDTEDEMAHEHQGNEPRARLARWKSSKSRRGWFGNHRDKLAHSSMPTPMRRQGTASPFFAPSAAATVVETTAYKDVMEMQKMLLAVYLPLPILLAMLVSEVLRVSTKAEEA-GGDDHAFLHNMTTSLSLACCVLSALSAFAVVSRNARVMVQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEIQKQYENVLSDLIEGDLVAAWSNPTSQMQNAAEAIQSCFR---------------------------------MHLASQRMVRALEFRTWLHDCRPQRRSMNILAGGAVVTTILCLTYTNMVFAVKFDR 1260
            MSA+ LQA+FYGKSQ+ +R+K EMT  +ALFM+P  L+FPA++R ANTPP+S+TL R            + + AH+ Q      +L              + RD+L           +     F A           A  DV   Q                    V RV  +AE+A GG+ +A LHN+T SL + C +L A+SA+ V +    +M Q   FQAV+AP L+LCG +LYGSS  +ATGAV G    L+ +Y + + ++ E V+  + E DL+ AWS+P   M +A   +Q  +R                                 +H A  R  R +EF TWL+ C+ +R  M++L    V   ILCLTYTN+VFA+KFDR
Sbjct:    1 MSAVTLQAIFYGKSQFSIREKAEMTAATALFMIPTALVFPAMMRLANTPPSSETLTRVR----------KHKTAHKQQPQGGNKQLM-------------SQRDRLV----------KAQREEFHA-----------ALSDVTGPQ--------------------VFRVMGEAEKAPGGNQNARLHNVTASLGILCTLLCAVSAYGVAAHRVTIMSQAMVFQAVLAPALVLCGAILYGSSVGLATGAVFGGLGTLVCAYFLRVHRRIELVVRKVCEDDLITAWSHPVPSMHSAVLRVQQAYRGFLLSAYHYCTSFIESTVGDNLVLNLGCTTLTRIHRAMTRTARIVEFTTWLNKCKRRRSVMHMLVNSVVYVVILCLTYTNLVFAIKFDR 328          
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: D7G0E0_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E0_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 2.430e-41
Identity = 116/373 (31.10%), Postives = 162/373 (43.43%), Query Frame = 1
Query:  145 LRRPQHLILLLADWMSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPPASQTLKRTEGVHQDAIEDTEDEMAHEHQGNEPRARLARWKSSKSRRGWFGNHRDKLAHSSMPTPMRRQGTASPFFAPSAAATVVETTAYKDVMEMQKMLLAVYLPLPILLAMLVSEVLRVSTKAE-EAGGDDHAFLHNMTTSLSLACCVLSALSAFAVVSRNARVMVQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLGAAIALIGSYLIEIQKQYENVLSDLIEGDLVAAWSNPTSQMQNAAEAIQSCFRMHLASQRMVRALEFRTWLHDCRPQRRSMNILAGGAVVTTILCLTYTNMVFAVKFDR 1260
            L R QHL++LLADWMS + LQA+FYGKSQ+ +R+K                                                    A EH                +R G    HR+                                                             +V RV  +AE +AGG+   FLHN+T SL +AC +L   SA+ VV+    +M Q  + QAV+ P L+LCG +L+GS   +ATGAV G    L+ +Y + + ++ E V+  + + DL+  WS+P   M +AA  +Q  FRMH A++R  RA+EF TWLH+C+  R  M +     V   ILCLTY N+VFA+KFDR
Sbjct:  377 LTRSQHLVILLADWMSVLTLQAIFYGKSQFSIREKGS--------------------------------------------------AEEHN---------------ARVGGGERHRE-------------------------------------------------------------QVFRVMDEAEGDAGGNQEEFLHNLTASLGIACGLLCLFSAYGVVTHRVTIMSQAMAAQAVITPALVLCGAVLFGSDIGLATGAVFGGLGTLLCAYFLNMHRKNELVVQRVCQEDLITTWSHPLPFMHSAALPVQRAFRMHRAAKRTTRAIEFNTWLHECKHGRSVMYVCLNSLVYVVILCLTYANLVFAIKFDR 623          
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: A0A6H5JM73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM73_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.270e-15
Identity = 48/127 (37.80%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  922 GAVLGAAIALIGSYLIEIQKQYENVL-SDLIEGDLVAAWSNPTSQMQNAAEAIQSCFR-------------MHLASQRMVRALEFRTWLHDCRPQRRSMNILAGGAVVTTILCLTYTNMVFAVKFDR 1260
            GAV G    L+  YL+++ +Q E    S + + DL+  WS P   M +AA  +Q  FR             MH  + R  RA+EF T L++C+ +R  M +     V   ILCLTY N+VFA+KFDR
Sbjct:    9 GAVFGGLGTLVCPYLLKMHRQAERTGGSKVCQEDLITTWSYPLPFMHSAALHLQRAFRTDQVECGAQTVSRMHRDATRTTRAIEFNTCLNECKQRRSMMYVCPNSVVYVAILCLTYANLVFAIKFDR 135          
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Match: D7G0E1_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E1_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.210e-6
Identity = 35/73 (47.95%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   61 PTPCTSCLAELPSEACSIFH------GGPCPG---R*LRRPQHLILLLADWMSAIMLQAVFYGKSQYGVRQKV 252
            P+  T CLA   +++  + H      G P        L R QHL++LLADWMSA+ LQAVFYGKSQ  +RQKV
Sbjct:  374 PSKRTDCLATASAKSVFMNHAWRHLWGSPTEHFKKTLLTRSQHLVILLADWMSAVALQAVFYGKSQVSIRQKV 446          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8404.17416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JCS7_9PHAE1.750e-11650.84REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJB7_ECTSI1.150e-10057.51GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJB6_ECTSI1.900e-9560.56GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JGV2_9PHAE1.170e-8143.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVI0_9PHAE7.260e-5734.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0E0_ECTSI2.430e-4131.10GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JM73_9PHAE8.270e-1537.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0E1_ECTSI1.210e-647.95GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8404contigL-elsbetiae_contig8404:1885..5718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons7
Model size1662
Cds size1077
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816923.1095846-UTR-L-elsbetiae_contig8404:1884..20701622816923.1095846-UTR-L-elsbetiae_contig8404:1884..2070Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8404 1885..2070 +
1691683915.2818565-UTR-L-elsbetiae_contig8404:1884..20701691683915.2818565-UTR-L-elsbetiae_contig8404:1884..2070Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8404 1885..2070 +
1622816923.2117088-UTR-L-elsbetiae_contig8404:5319..57181622816923.2117088-UTR-L-elsbetiae_contig8404:5319..5718Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8404 5320..5718 +
1691683915.370469-UTR-L-elsbetiae_contig8404:5319..57181691683915.370469-UTR-L-elsbetiae_contig8404:5319..5718Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8404 5320..5718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816923.1213257-CDS-L-elsbetiae_contig8404:2070..21331622816923.1213257-CDS-L-elsbetiae_contig8404:2070..2133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 2071..2133 +
1691683915.2924309-CDS-L-elsbetiae_contig8404:2070..21331691683915.2924309-CDS-L-elsbetiae_contig8404:2070..2133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 2071..2133 +
1622816923.132961-CDS-L-elsbetiae_contig8404:2436..26441622816923.132961-CDS-L-elsbetiae_contig8404:2436..2644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 2437..2644 +
1691683915.3050885-CDS-L-elsbetiae_contig8404:2436..26441691683915.3050885-CDS-L-elsbetiae_contig8404:2436..2644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 2437..2644 +
1622816923.1435354-CDS-L-elsbetiae_contig8404:2945..30031622816923.1435354-CDS-L-elsbetiae_contig8404:2945..3003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 2946..3003 +
1691683915.3185816-CDS-L-elsbetiae_contig8404:2945..30031691683915.3185816-CDS-L-elsbetiae_contig8404:2945..3003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 2946..3003 +
1622816923.1551044-CDS-L-elsbetiae_contig8404:3413..35821622816923.1551044-CDS-L-elsbetiae_contig8404:3413..3582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 3414..3582 +
1691683915.3281322-CDS-L-elsbetiae_contig8404:3413..35821691683915.3281322-CDS-L-elsbetiae_contig8404:3413..3582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 3414..3582 +
1622816923.169249-CDS-L-elsbetiae_contig8404:4179..44171622816923.169249-CDS-L-elsbetiae_contig8404:4179..4417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 4180..4417 +
1691683915.3399682-CDS-L-elsbetiae_contig8404:4179..44171691683915.3399682-CDS-L-elsbetiae_contig8404:4179..4417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 4180..4417 +
1622816923.182163-CDS-L-elsbetiae_contig8404:4585..47541622816923.182163-CDS-L-elsbetiae_contig8404:4585..4754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 4586..4754 +
1691683915.3502948-CDS-L-elsbetiae_contig8404:4585..47541691683915.3502948-CDS-L-elsbetiae_contig8404:4585..4754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 4586..4754 +
1622816923.1976485-CDS-L-elsbetiae_contig8404:5147..53191622816923.1976485-CDS-L-elsbetiae_contig8404:5147..5319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 5148..5319 +
1691683915.3612025-CDS-L-elsbetiae_contig8404:5147..53191691683915.3612025-CDS-L-elsbetiae_contig8404:5147..5319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8404 5148..5319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8404.17416.1prot_L-elsbetiae_contig8404.17416.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8404 2071..5319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8404.17416.1

>prot_L-elsbetiae_contig8404.17416.1 ID=prot_L-elsbetiae_contig8404.17416.1|Name=mRNA_L-elsbetiae_contig8404.17416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=359bp
MSAIMLQAVFYGKSQYGVRQKVEMTVVSALFMLPAGLIFPALLRAANTPP
ASQTLKRTEGVHQDAIEDTEDEMAHEHQGNEPRARLARWKSSKSRRGWFG
NHRDKLAHSSMPTPMRRQGTASPFFAPSAAATVVETTAYKDVMEMQKMLL
AVYLPLPILLAMLVSEVLRVSTKAEEAGGDDHAFLHNMTTSLSLACCVLS
ALSAFAVVSRNARVMVQTTSFQAVVAPGLMLCGVLLYGSSASIATGAVLG
AAIALIGSYLIEIQKQYENVLSDLIEGDLVAAWSNPTSQMQNAAEAIQSC
FRMHLASQRMVRALEFRTWLHDCRPQRRSMNILAGGAVVTTILCLTYTNM
VFAVKFDR*
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mRNA from alignment at L-elsbetiae_contig8404:1885..5718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8404.17416.1 ID=mRNA_L-elsbetiae_contig8404.17416.1|Name=mRNA_L-elsbetiae_contig8404.17416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3834bp|location=Sequence derived from alignment at L-elsbetiae_contig8404:1885..5718+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTCGCTGGTCTTAATCTTGTACGAATCTCCCGGTAGTACTTGGGCAGC GTTTGGGGGTCCAACTCCATGTACGAGTTGCTTGGCCGAACTGCCTTCTG AAGCTTGCTCCATCTTTCATGGAGGACCTTGCCCCGGTCGCTGACTTCGC AGGCCTCAGCACCTGATACTTCTGCTGGCCGATTGGATGAGCGCCATCAT GCTACAGGCTGTCTTCTACGGCAAGAGTCAGTACGGCGTGAGACAAAAGG TAAGCCAAACGTCGCGCTTCCTGGTTGCTCGTGATTATAAGCGCTTGCGT GCTCACTCACATGTGCGTCCAGCATGACGTTTACCAGCACACCATGTGCC ATCCGCCAACATCACACCCCGCACCAAAGCGCGGTTAGTAAGCAAGCTGA ATCCATCCATGGCAGTTGATCTTCGTATGAGGATTAGGGGTTAAAATTGG CTCTCTTCGTTTTTTTGAGTGAAATTCAGGGTTGCCACCAATGGTCCACA CACACCCCCACCTGGCAATACGCTAACTCGAGGAGCATTGGGTCACGCGC AGGTGGAGATGACTGTTGTCAGTGCCCTGTTCATGCTGCCGGCCGGGTTA ATTTTCCCCGCCCTCTTACGGGCTGCCAATACCCCGCCGGCATCGCAAAC ACTGAAGCGCACTGAAGGCGTGCACCAAGACGCCATCGAGGACACCGAGG ACGAAATGGCGCACGAGCACCAGGGAAACGAGCCCCGAGCGCGTCTTGCC CGCTGGAAGAGTGAGTTAAAAGCCCGTATGTATGTACCCAGTATGTGCAT AGCCTTGAGCTGGACTTACGTACGAAGCGTGCACTGCACACGCCGCCTTG TCCCTACCTAAATCGCAATAAGAACTCACGGGTTTGACGGGAAGGACTTG CTACAATGGGCTGCCCAGCTTGATGCTGCGTACTCGATTTTGCAAGACCT GCGTCCAGCATGTGCATGCGCACTTGACAACAACGCCAACGTGCACGTCC CTGGTGGCCCTCATGGTGCTGTTAATTCTGTGCGGCGGTTGGCACCTGCT GTGTAACGCAGGCAGTAAGAGTCGGCGAGGTTGGTTCGGCAATCACCGGG ACAAACTGGCGCACTCCAGGTGGGCTCAAAACGTTCCAAGATTTCGTGCC GAAATGTTACACTTGCCCGCTCGTGTTTGCCTTGATCAGTTTTCGACCAC TATAGGCTTGGGCAGTAGCGGACATGACGACGACCTACGCCATGTAGCGA TACTGACCAGCTCGCGCGCACGAGGGTACGTTGTTTGCTCAAGAAGCCTC TCTTCAACGATTCTGTGACAAGAACTCTTGATTCTCGGGCGTACTTTCCC CTCTTGGCGTTTGCGATGGAGGTTTAGGCGCATTCACGCACTCGCGACAC GAATGTATACAGAAAAGTCACACAGCAGTTGAACGTGCCGGTGTTGATCC CAGCCGCGCTTCAAAGAAAGCGACGAACAGCCGCACACGTTGAGGGTTAT ATTCACCTTCCCTCGTATTCCCCATCCAGCATGCCTACCCCGATGCGACG GCAAGGGACGGCGTCTCCTTTCTTCGCACCCAGCGCAGCCGCGACGGTAG TGGAAACGACGGCGTACAAGGATGTTATGGAGATGCAGAAGATGTTGCTT GCCGTCTATCTCCCCCTTCCAATCTTGCTGGCGATGCTCGTTTCTGAGGT AAGGTGCGCCGAGTGAACGTTCGCGTCAGCTCTGCGACGATACTTGCCTG ATAGCCCTTAGTGGGCATGGTTGCGTTGCACAGTAGTGTTATGCTGAATC AAAGAAACAAAACGATCATATGCAAAACGGTTGTCATCGGTTGACGAAAC TAGGCGCACGGCAACGACGCCCGCTCCGAAAAAGTGTTTTGTTGTCTTGA GATATACCTGCGTATTTAACTATACCTGGTTGTTCTGGGATTTCCGCTGT CGCTTGTTGTGCGCCTCTCTAGAATAGACAAGATTGCGTTGCGCTTAATG TCACATCCGGTCGTCCGCAGGTGTTCTTTTCCGTTCTATCAGGGACCGAT GTATCGCTCTCCATCAAAGTGGACCATTCCGGCCATATGTGATCTTCGAG AACAGTCCAACCCCCCCACTTTCGCGACTTCAGACCCCGCACGCTTTTTC TCGCGCCTGTCACAGGTCAACGATGTCAATATGTTTTGCTTGACTGAGCG TGACGTTGGTCTTCGGGATGGGCAAGAACTCACGCAACATTTGTTGAATA GTGAAGGAATGCGTGCGTGCATTGTCCGACCCTTCGCGACGCCAGGTGCT CCGTGTTTCGACGAAAGCCGAAGAAGCAGGAGGGGACGACCACGCGTTCT TGCACAATATGACCACGTCCCTGAGCTTGGCGTGCTGTGTTTTGAGTGCG CTTTCAGCCTTTGCAGTTGTAAGTCGTAACGCCAGAGTCATGGTGCAGAC AACGTCTTTTCAAGCCGTCGTCGCCCCGGGCCTGATGCTGTGTGGCGTTC TTCTGTACGGGTCAAGCGCTTCTATTGCAACAGGTGGGGCATGTCGAGAG ACAGATAGGGCAATTTCACAGCTTCTTGAGCATCGCGGAGCAGACCAGCT GCACCTGTAGGGAAACTACTGCTTCCCTTTGTGCGGAACGACATGCTTCT GTTCAACACAGTCAATATACCACTGTCCCCGTGCTCACTTCATTGTTCCA GGAGCGGTGTTAGGCGCGGCTATCGCGCTCATTGGTTCGTACTTAATTGA GATTCAAAAGCAGTACGAAAATGTACTGAGTGACTTAATCGAGGGCGATC TGGTGGCGGCGTGGTCGAACCCTACGAGCCAAATGCAGAATGCGGCGGAA GCAATCCAGAGCTGTTTCAGGTGCGACATCAACATTGATTTGAGTCAACT TGTGGCCTCCTGGGATGGGTGGACTTCGGGCAATATATCTATTCCGAAAA TGCATTCCGAACTGCATTGTACCCGCACGCTGTAGTGGGGTTGGAACCTC TGCGCCCAAGACCGATCGTAATATTTTGGTTTAATTTCAAGCCGCAATAT CTTCGCCTGCTGAAGTGACGTGAAAATACGGTGGTCATGTCTAGATCTAC AGAATTAGTCTGAAGTATGTTACAGACTTGGTGTGCCCCCAATAATGCTG CAGCAACCGGCCGTCCCGAGCATTCTCTGAGCAACCGACAGCGGCTGAAG TGTAAACATTTGGTTCCTGGCGAATGCGTTACACGCACAGACGTGTATTC CTTGTCTCCGCAGAATGCATCTCGCCTCCCAGAGGATGGTTCGAGCGCTA GAATTTCGCACGTGGCTGCACGATTGCCGTCCACAACGGCGCTCAATGAA CATTCTTGCCGGTGGGGCCGTTGTCACGACCATACTGTGCCTGACCTACA CCAACATGGTATTCGCCGTCAAGTTTGATCGGTGAGTGTCGTCACATCGT GTCACCGTGACAAAACACAGCTTTCTGCGACACGATTTGACCGACAACCG GAAATATATGCACGTACAGATAGATATACTTGTCTCGTGGCTGTTTTGAG AAGAATTTCGAAACTTTGTCAGCACTCGACATTCGTGTGTCGTTTGGGCG GCCTTTTGTGTGCGAGCCTGTAGAGTACTGCTCCGAGCACAGCGCCACCT CAACTCTACATAAACCCGCGACAACATTGAAACCGAGACTGTACTTTGTC AGGCTCATCCCAGACGATTGCTCGACGAATGGGTTCAGTGCCATACTCAG ACGCTCGGACAATTTGTTTTCGATGGACCCCTTGTTGCTCTACCCCTCTC CAGCACTACCTCGGCCGATTGGCTGACTACCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8404:1885..5718+

>mRNA_L-elsbetiae_contig8404.17416.1 ID=mRNA_L-elsbetiae_contig8404.17416.1|Name=mRNA_L-elsbetiae_contig8404.17416.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2154bp|location=Sequence derived from alignment at L-elsbetiae_contig8404:1885..5718+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGCCATCATGCTACAGGCTGTCTTCTACGGCAAGAGTCAGTACGG
CGTGAGACAAAAGATGAGCGCCATCATGCTACAGGCTGTCTTCTACGGCA
AGAGTCAGTACGGCGTGAGACAAAAGGTGGAGATGACTGTTGTCAGTGCC
CTGTTCATGCTGCCGGCCGGGTTAATTTTCCCCGCCCTCTTACGGGCTGC
CAATACCCCGCCGGCATCGCAAACACTGAAGCGCACTGAAGGCGTGCACC
AAGACGCCATCGAGGACACCGAGGACGAAATGGCGCACGAGCACCAGGGA
AACGAGCCCCGAGCGCGTCTTGCCCGCTGGAAGAGTGGAGATGACTGTTG
TCAGTGCCCTGTTCATGCTGCCGGCCGGGTTAATTTTCCCCGCCCTCTTA
CGGGCTGCCAATACCCCGCCGGCATCGCAAACACTGAAGCGCACTGAAGG
CGTGCACCAAGACGCCATCGAGGACACCGAGGACGAAATGGCGCACGAGC
ACCAGGGAAACGAGCCCCGAGCGCGTCTTGCCCGCTGGAAGAGCAGTAAG
AGTCGGCGAGGTTGGTTCGGCAATCACCGGGACAAACTGGCGCACTCCAG
GCAGTAAGAGTCGGCGAGGTTGGTTCGGCAATCACCGGGACAAACTGGCG
CACTCCAGCATGCCTACCCCGATGCGACGGCAAGGGACGGCGTCTCCTTT
CTTCGCACCCAGCGCAGCCGCGACGGTAGTGGAAACGACGGCGTACAAGG
ATGTTATGGAGATGCAGAAGATGTTGCTTGCCGTCTATCTCCCCCTTCCA
ATCTTGCTGGCGATGCTCGTTTCTGAGCATGCCTACCCCGATGCGACGGC
AAGGGACGGCGTCTCCTTTCTTCGCACCCAGCGCAGCCGCGACGGTAGTG
GAAACGACGGCGTACAAGGATGTTATGGAGATGCAGAAGATGTTGCTTGC
CGTCTATCTCCCCCTTCCAATCTTGCTGGCGATGCTCGTTTCTGAGGTGC
TCCGTGTTTCGACGAAAGCCGAAGAAGCAGGAGGGGACGACCACGCGTTC
TTGCACAATATGACCACGTCCCTGAGCTTGGCGTGCTGTGTTTTGAGTGC
GCTTTCAGCCTTTGCAGTTGTAAGTCGTAACGCCAGAGTCATGGTGCAGA
CAACGTCTTTTCAAGCCGTCGTCGCCCCGGGCCTGATGCTGTGTGGCGTT
CTTCTGTACGGGTCAAGCGCTTCTATTGCAACAGGTGCTCCGTGTTTCGA
CGAAAGCCGAAGAAGCAGGAGGGGACGACCACGCGTTCTTGCACAATATG
ACCACGTCCCTGAGCTTGGCGTGCTGTGTTTTGAGTGCGCTTTCAGCCTT
TGCAGTTGTAAGTCGTAACGCCAGAGTCATGGTGCAGACAACGTCTTTTC
AAGCCGTCGTCGCCCCGGGCCTGATGCTGTGTGGCGTTCTTCTGTACGGG
TCAAGCGCTTCTATTGCAACAGGAGCGGTGTTAGGCGCGGCTATCGCGCT
CATTGGTTCGTACTTAATTGAGATTCAAAAGCAGTACGAAAATGTACTGA
GTGACTTAATCGAGGGCGATCTGGTGGCGGCGTGGTCGAACCCTACGAGC
CAAATGCAGAATGCGGCGGAAGCAATCCAGAGCTGTTTCAGGAGCGGTGT
TAGGCGCGGCTATCGCGCTCATTGGTTCGTACTTAATTGAGATTCAAAAG
CAGTACGAAAATGTACTGAGTGACTTAATCGAGGGCGATCTGGTGGCGGC
GTGGTCGAACCCTACGAGCCAAATGCAGAATGCGGCGGAAGCAATCCAGA
GCTGTTTCAGAATGCATCTCGCCTCCCAGAGGATGGTTCGAGCGCTAGAA
TTTCGCACGTGGCTGCACGATTGCCGTCCACAACGGCGCTCAATGAACAT
TCTTGCCGGTGGGGCCGTTGTCACGACCATACTGTGCCTGACCTACACCA
ACATGGTATTCGCCGTCAAGTTTGATCGGTGAAATGCATCTCGCCTCCCA
GAGGATGGTTCGAGCGCTAGAATTTCGCACGTGGCTGCACGATTGCCGTC
CACAACGGCGCTCAATGAACATTCTTGCCGGTGGGGCCGTTGTCACGACC
ATACTGTGCCTGACCTACACCAACATGGTATTCGCCGTCAAGTTTGATCG
GTGA
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