mRNA_L-elsbetiae_contig84.17403.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig84.17403.1
Unique NamemRNA_L-elsbetiae_contig84.17403.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig84.17403.1 vs. uniprot
Match: D8LI31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI31_ECTSI)

HSP 1 Score: 524 bits (1350), Expect = 4.660e-177
Identity = 464/558 (83.15%), Postives = 476/558 (85.30%), Query Frame = 2 
Query:   32 RRSRCWLVAFGGSLVCWAASAADPLPQQVEHPFRNLAAWLREASPDMRSADPKAISRGITVLSNSQSYVKSFDGMAYELKGKIKEGGSTADIDKLLQQAELYESESSAKKAGKLVRLLIEVERSLNSAEAAEIASQSDPARAARYMKDAGLRLLPEPXXXXXXXXXXXXXXXXXXXXXXXXXTPTDVASKVRARSRDRSSTAKTAAAKTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATL----GEPLETFVVTVAGCEVRCLLMLEERAGDGGPVDGDGEGGAEGGRLVVAVGDSLTGAALLQSLFEEPAVVQLASHGLMRETAYVNRAAFQAACDILEWAGPFIKASVEHGGPFEGYRVHCAGHSFGGAVAACLAGLLDGAIDVEASSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAVVRVDGAAPWVAACRDRVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQ 1693
            RR RCWLVAFGG+L CW A AADP  QQ EHPFRNLAAWLREASPDMRSA+PKAISRGITVLSNSQSYVKSFDGMAYELKGKIKE GSTADI+KL  QAELYES SS KKA KLVRLLIEVER+LNSAEAAEIASQSDP+RAA+YMKDAGLR LP+PXXXXXXXXXXXXXXXXXXXXXXXXX            +R              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         GEPLE FVV VAGCEVRC LML+ER G+      +GEG     RLVVAVGDSLTG ALL+SLFEEPAVVQLASHGLMRETAYVNR AFQ ACDILEWAGPFIKASVE GG FEGYRVHCAGHSFGGAVAACLAGLLDGAIDVE S   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    VRVDGA PWV   RD VTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQ
Sbjct:    5 RRLRCWLVAFGGTLACWVALAADPSLQQAEHPFRNLAAWLREASPDMRSAEPKAISRGITVLSNSQSYVKSFDGMAYELKGKIKETGSTADIEKLTGQAELYESASSVKKANKLVRLLIEVERALNSAEAAEIASQSDPSRAAQYMKDAGLRFLPDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGPTRVSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEPLEAFVVNVAGCEVRCFLMLDERGGE------EGEG-----RLVVAVGDSLTGEALLESLFEEPAVVQLASHGLMRETAYVNRVAFQCACDILEWAGPFIKASVEPGGAFEGYRVHCAGHSFGGAVAACLAGLLDGAIDVEPSGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRVDGAEPWVGIRRDGVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQ 551
[Close]
BLAST of mRNA_L-elsbetiae_contig84.17403.1 vs. uniprot
Match: A0A835YUE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.820e-21
Identity = 95/253 (37.55%), Postives = 115/253 (45.45%), Query Frame = 2 
Query:  998 AEGGRLVVAVGDSLTGAALLQSLFEEPAVVQLASHGLMRETAYVNRAAFQAACDILEWAGP----FIKASVEHGGPFEGYRVHCAGHSFGGAVAACLAGLLDGAIDVEASSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAVVRVDGAAP-----------------WVAACRDRVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQ 1693
            A+G R+V A+ D L G ALL++L   P  + LA+ GL+ ET +   A + AA  +L    P    F+++    G       V   GHSF GAVAA  AGLLDGA+ VE     XXXXXXX                                                GG+  R  G A                  +V A R RV CVT GCPPC+S    LP VTSFVLGDDMVPR S +SL +LKRRL Q
Sbjct:  183 AQGKRVVAALADDLGGGALLRALSAAPIALPLAARGLLHETLHTAPAVWAAAHALLAAIAPAVLNFLRSPAGAGA-----TVLFVGHSFAGAVAAVAAGLLDGALAVEGGGGSXXXXXXXSGRRSEGKVGSAEARCK-------------------------------GGSSRRAKGVAEGGDGGMXXXXXXXXSGGYVGAARGRVKCVTFGCPPCVSGAAALPCVTSFVLGDDMVPRVSAQSLEQLKRRLRQ 399
[Close]
BLAST of mRNA_L-elsbetiae_contig84.17403.1 vs. uniprot
Match: A0A4D9DDN3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDN3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.200e-10
Identity = 88/236 (37.29%), Postives = 113/236 (47.88%), Query Frame = 2 
Query: 1010 RLVVAVGDSLTGAALLQSLFEEPAVVQLASHGLMRETAYVNRAAFQAACDILEWAGPFIKASVEHGGPFEGYRVHCAGHSFGGAVAACLAGLLDGAIDVEASSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAVVRVDGAAPWVAACR-------DRVTCVTLGCPPCLSQNLR--LPFVTSFVLGDDMVPRTSHESLRRLKRRLL 1690
            RL ++VGDSLT A  L  L   P  V L   GL+R +  VN   + AA  ++E     +  + E       Y +H  G S GG+V A +AG+LDG I VE +                            XXXXXXXXXXXXXXXXXXXXX                   + W  A R       D VT       PC+S+N+R    F TSF+LGDDM+PR +  S++RL++RLL
Sbjct:  259 RLTLSVGDSLTWAQRLDVLRAPPLTVPLRPRGLLRRSMMVNPRLWAAAATVIERVRAVLTTARE---TCPNYALHVVGFSLGGSVGALVAGVLDGTIFVEGAVPAPPTRRSHTRRGRAARAGVAVPEEGEXXXXXXXXXXXXXXXXXXXXX----------------SSTSSWAHALRGATGLAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLL 475
[Close]
BLAST of mRNA_L-elsbetiae_contig84.17403.1 vs. uniprot
Match: K8ZAB7_NANGC (Fructose-bisphosphate aldolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZAB7_NANGC)

HSP 1 Score: 75.5 bits (184), Expect = 1.620e-10
Identity = 71/236 (30.08%), Postives = 98/236 (41.53%), Query Frame = 2 
Query: 1010 RLVVAVGDSLTGAALLQSLFEEPAVVQLASHGLMRETAYVNRAAFQAACDILEWAGPFIKASVEHGGPFEGYRVHCAGHSFGGAVAACLAGLLDGAIDVEASSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAVVRVDGAAPWVAACR-------DRVTCVTLGCPPCLSQNLR--LPFVTSFVLGDDMVPRTSHESLRRLKRRLL 1690
            RL ++VGDSLT A  L  L      V L   GL+R +  VN   + AA  ++E     +  ++    P  GY +H  G S GG+V A +AG+LDG+I VE +                                           XXXX                     + W  A R       D VT       PC+S+N+R    F TSF+LGDDM+PR +  S++RL++RLL
Sbjct:  230 RLTLSVGDSLTWAQRLDVLRAPSLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCP--GYALHVVGFSLGGSVGALVAGVLDGSIFVEGAVPAPPTRRSHTRRGRGARAGVAVPDEGEAEGQDGAKEASISPAXXXXP----------------TSPTSSWPQALRGATGLAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLL 447
[Close]
BLAST of mRNA_L-elsbetiae_contig84.17403.1 vs. uniprot
Match: A0A7S4AGX7_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AGX7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.220e-6
Identity = 84/229 (36.68%), Postives = 111/229 (48.47%), Query Frame = 2 
Query: 1007 GRLVVAVGD--SLTGAALLQSLFEEPAVVQLASHGLMRETAYVNRAAFQAACDILEWAGPFIKASVEHGGPFEGYRVHCAGHSFGGAVAACLAGLLDGAIDVEASSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAVVRVDGAAPWVAACRDRVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRL 1687
            GRL+V +GD  SLT A  +Q L E P  ++L+S  +  E A V    ++ A  +L    P ++        +    VH  GHS  G VA+  A +LDG+I +       XXXXXXXXXXXXX                              XXXXXXXXXXX           P     R R + + +G PPCLS N+   F TSFV GDD++ RT+ +S+ RL RR+
Sbjct:  262 GRLLVVLGDHSSLTVAQKIQILDETPKKIKLSSGLVTNEVASVQPTLYKHAGKLLTLLEPQLRQ-------YNTSAVHFVGHSLAGGVASLAATMLDGSIPMPKKRPRGXXXXXXXXXXXXXPASNDENPSTDSAGESEEENPEDEVVPLEKXXXXXXXXXXXXXXXXXXXXXXPLSGLGRARASALAVGSPPCLSSNVVAAFCTSFVYGDDILCRTTKDSIDRLVRRI 483
[Close]
BLAST of mRNA_L-elsbetiae_contig84.17403.1 vs. uniprot
Match: A0A7S1UN44_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UN44_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.460e-6
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 2 
Query: 1541 RDRVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRR 1684
            R R + V LG PPC+S NL+  FV S V GDD+V RT+HES+ RL  R
Sbjct:   55 RGRASAVALGPPPCISSNLKAAFVKSIVYGDDVVCRTTHESIERLLSR 102
[Close]
BLAST of mRNA_L-elsbetiae_contig84.17403.1 vs. uniprot
Match: A0A7S2S0W5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S0W5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.650e-5
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 2 
Query: 1541 RDRVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQA 1696
            + R + V LG PPCLS N++  +VTS V GDD+V RT+ +S+ RL RR ++A
Sbjct:    7 KGRTSAVVLGPPPCLSPNVKASYVTSLVHGDDIVCRTTPQSMDRLYRRTVRA 58
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig84.17403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LI31_ECTSI4.660e-17783.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUE7_9STRA4.820e-2137.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DDN3_9STRA1.200e-1037.29Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
K8ZAB7_NANGC1.620e-1030.08Fructose-bisphosphate aldolase n=1 Tax=Nannochloro... [more]
A0A7S4AGX7_9STRA1.220e-636.68Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A7S1UN44_9STRA6.460e-656.25Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2S0W5_9STRA3.650e-550.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig84contigL-elsbetiae_contig84:4635..9316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score533.5
Seed ortholog evalue1.2e-148
Seed eggNOG ortholog2880.D8LI31
Hectar predicted targeting categorysignal peptide
EggNOG OGs2C0DA@1,2S938@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-04_003030.1
Exons5
Model size1714
Cds size1698
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig84.17403.1prot_L-elsbetiae_contig84.17403.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig84 4651..9316 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816922.044069-UTR-L-elsbetiae_contig84:4634..46501622816922.044069-UTR-L-elsbetiae_contig84:4634..4650Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig84 4635..4650 +
1691683914.370607-UTR-L-elsbetiae_contig84:4634..46501691683914.370607-UTR-L-elsbetiae_contig84:4634..4650Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig84 4635..4650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816922.0577865-CDS-L-elsbetiae_contig84:4650..47911622816922.0577865-CDS-L-elsbetiae_contig84:4650..4791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 4651..4791 +
1691683914.3848622-CDS-L-elsbetiae_contig84:4650..47911691683914.3848622-CDS-L-elsbetiae_contig84:4650..4791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 4651..4791 +
1622816922.0723968-CDS-L-elsbetiae_contig84:5280..54361622816922.0723968-CDS-L-elsbetiae_contig84:5280..5436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 5281..5436 +
1691683914.3939223-CDS-L-elsbetiae_contig84:5280..54361691683914.3939223-CDS-L-elsbetiae_contig84:5280..5436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 5281..5436 +
1622816922.086601-CDS-L-elsbetiae_contig84:7009..78431622816922.086601-CDS-L-elsbetiae_contig84:7009..7843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 7010..7843 +
1691683914.4087906-CDS-L-elsbetiae_contig84:7009..78431691683914.4087906-CDS-L-elsbetiae_contig84:7009..7843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 7010..7843 +
1622816922.0976586-CDS-L-elsbetiae_contig84:8614..88251622816922.0976586-CDS-L-elsbetiae_contig84:8614..8825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 8615..8825 +
1691683914.4202275-CDS-L-elsbetiae_contig84:8614..88251691683914.4202275-CDS-L-elsbetiae_contig84:8614..8825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 8615..8825 +
1622816922.1085362-CDS-L-elsbetiae_contig84:8960..93161622816922.1085362-CDS-L-elsbetiae_contig84:8960..9316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 8961..9316 +
1691683914.4304469-CDS-L-elsbetiae_contig84:8960..93161691683914.4304469-CDS-L-elsbetiae_contig84:8960..9316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig84 8961..9316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig84.17403.1

>prot_L-elsbetiae_contig84.17403.1 ID=prot_L-elsbetiae_contig84.17403.1|Name=mRNA_L-elsbetiae_contig84.17403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=566bp
MVRHHRRSRCWLVAFGGSLVCWAASAADPLPQQVEHPFRNLAAWLREASP
DMRSADPKAISRGITVLSNSQSYVKSFDGMAYELKGKIKEGGSTADIDKL
LQQAELYESESSAKKAGKLVRLLIEVERSLNSAEAAEIASQSDPARAARY
MKDAGLRLLPEPPPPPPPPPPTEDKNATAATSAESSATPTDVASKVRARS
RDRSSTAKTAAAKTAAERRRPSSSSSSSSSSSSSAAAAAAERDSRGQKKN
TKKKSSKRRRSVAAAEEGGSSAAAAAAAAAAAAGAATLGEPLETFVVTVA
GCEVRCLLMLEERAGDGGPVDGDGEGGAEGGRLVVAVGDSLTGAALLQSL
FEEPAVVQLASHGLMRETAYVNRAAFQAACDILEWAGPFIKASVEHGGPF
EGYRVHCAGHSFGGAVAACLAGLLDGAIDVEASSAGGGDGGDGRRRGSGI
SGGGGAGSGGSSRRRLSDASSSSSSSSSSFPEESEASGSEEGGAVVRVDG
AAPWVAACRDRVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESL
RRLKRRLLQASCCCC*
back to top

mRNA from alignment at L-elsbetiae_contig84:4635..9316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig84.17403.1 ID=mRNA_L-elsbetiae_contig84.17403.1|Name=mRNA_L-elsbetiae_contig84.17403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4682bp|location=Sequence derived from alignment at L-elsbetiae_contig84:4635..9316+ (Laminarionema elsbetiae ELsaHSoW15)
TGACAAGAGCCTGCTCATGGTTCGGCATCATCGAAGATCACGATGTTGGC
TTGTGGCTTTTGGCGGAAGCTTGGTATGCTGGGCGGCTTCGGCGGCGGAC
CCGTTGCCTCAGCAAGTGGAGCATCCCTTCCGAAACCTGGCAGCTTGGCT
CCGTGAGGTATATATGTTGCAGATATGCGACTCCATGACACGTGGGCAGA
CGAACAAGGGGAGGAAACCATGATCATATTTCTTGGTATTGTTGCGTAGT
TATTTGGGCACCTGCCAGCTGCTTGTGTCCACCGGTATACTAGTATCTTG
TTTTTTAAAAATCGTACATGGGTACCTGCAGCACATGAGCAGCAGACTAG
ACTATGTCTATGTAGTCTGCACGTGTTCGAATCGAGGAGCCAAAGAAGCA
ATGGGAGGCGAGGGCTGCCTTGCTCTACGTACAGTACCATATGTAGCCCA
TTCAAACAGCGCGCCGGGGTGAACCGCTTCCTCTCAATTATCCCTCGTCA
AACACGAACCCTTCGTCTTCTCCCACAAGAACAAACAAAAGCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCC
CACCCCCCCACAAAAAACCAACACCCCCCCCCCCCCCCCCCCCCAGGCAT
CCCCTGACATGAGGTCAGCAGACCCCAAGGCAATATCCAGAGGAATAACC
GTGCTGAGCAATTCGCAGAGCTACGTGAAATCTTTCGATGGCATGGCCTA
CGAGCTCAAGGGCAAGATCAAGGAGGGCGGGAGCACTGCCGACATCGACA
AGGTGTATGTGTTTGTGCGTGTGAGGGGGGATCCGAACAGTGAGGGGGAT
AAACCCACCGGCTGCCAGCTGCTATCGATAGACCCCGCATTGCAAAGTAC
ATGCATTGCTGTACATACGTATATAATCTGCAAAATAAGCACCGACGCGC
TCGCCTGTGATGGACGCGCGCGATTGTTCCAGGAGCACGTACCCTAGTAA
CTGTCGTGCAGAGCCCCCACACTAGGGTTGCTGGGGGCTGACTCCCTACA
GACCTTTTCTCGATTTTTTCTTCACGAAGAGCGAAACGGCGTCGCCCCTG
ATCGGCCGCTTAGCCATAGGGCTGGGCACTTATTCCTCGACAGCTCCGGC
TGTAGTGGCGATCCAAAATTCCCCATACCCTCAGAAGAATCCGTTGAGAT
GACTCTACAGCCTGGTACCGTCGACAATTTGGGGCACGTTTTCGGCGGCC
CCCACGGCGATGAAAGTCAAATTGAGAGACGGTTTGAGGATTGTTTCCAC
ACAATATTGGAGGTAGACTCATGTGACATGCTGCTCGTCCTTGTGTAAAA
AGAGGTGTTCGTTGGTGTGACCGTCGCACCCGCGATCCAAAATTGCTCAA
AGCGTCTCTGCCATCTTCGTGTATATGCCTCCACTGCTGTGCCGAAGTAC
CGAGTGATTTCGCGAACTCCTTCGACGGCCTCCAAGCGTGTGAAGTTCGC
TGTGGGCGGCAAGAAATTGGGCCAAAGAAGTAGCTGCAACCTGGCCTCTT
CTAGTCGTGACGACGCAGCATTTCTCGAATTCAGGGCAGAAGGAAGGGTT
AAAAACTCCACGCGGACGTAGAACATGACATACGTGAGGCCTTCTGCAAT
TTTTACAGCAAGCCGCGTCCTGTGTGAGGAGTATCGTCGTGTGCAAAGGT
GGTGACTCTGCTGTGAGTTCGGCAAAAAAAAACTGCTGCGGCTGAAGAGC
AAAAAGACCCGTCTGCGTGGACCCTTGTGACTAGTTTGTAATGCACGGAG
CCCCCAGCAACACGCGTGCCCAACCCGTCGGTGACCGCCTGACCGACTTT
TACCCAAGGTACTCCCTTTAGTTTAGTTTTGCGGCGGAAAGATCAAGATT
GCGAACAGTAACAGGCACGAACGGTTTCTAATTCAATACCTTAAAACACT
ACTTTCCAGAGAAATAGTGGTGCCAACGACGGCACATCGCACGTATATAT
TACGATACAATCGCGGACACGACTTTCCAACCCAACCGGATGCGCCAAAC
TGTATACTTCTATATACATACACCCACCCTTTTCATCCACACGGTGTGCT
CCCTACAGCAGTAGTGAAGGCCTGCACACGAAGCCTGCGATGCTGTACGT
ATTGCAGATGCCGGCTACATGTCTGTCTAAATAGTCCACTTCGCGATCCC
CGCCCTAGTTTTTTTCATTCGCACCATCGTTTGTTGTTGTTGTTGTTGTT
GTTTGGTTTTGTTTTTCGCCCCGTACAATGGTCAATTCATTGTACATACT
TATGTACATATGTGTAACATGAAATCGTACAACATTCTGCGGTGCATTTG
GGCGCGCGGCGCGCGCTGCCCGCAGCTCCTGCAGCAGGCGGAGCTCTACG
AGAGCGAGTCCAGCGCCAAGAAGGCCGGCAAGCTTGTGAGGCTCTTGATC
GAGGTGGAGCGGTCGCTCAACTCCGCAGAGGCCGCCGAAATCGCGTCGCA
ATCCGACCCCGCCCGCGCGGCGCGGTACATGAAGGACGCAGGGCTGCGGC
TTCTACCCGAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTACCGAGGAT
AAAAATGCAACCGCAGCTACCTCTGCCGAGAGCTCAGCCACCCCCACGGA
CGTGGCGTCCAAGGTCCGCGCGCGATCGCGAGACAGGTCGTCGACAGCGA
AGACAGCGGCAGCAAAGACGGCAGCAGAGAGACGACGACCCTCTTCTTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCAGCAGCAGCAGCAGCAGA
GCGTGACAGTCGCGGCCAGAAGAAGAATACCAAGAAGAAAAGCAGCAAGC
GGAGGAGGAGCGTCGCTGCTGCCGAAGAAGGCGGAAGCAGCGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGCGGCGACCCTTGGGGAGCC
GCTCGAGACGTTCGTCGTCACGGTGGCCGGGTGCGAGGTGCGGTGCCTCT
TGATGCTGGAGGAGCGCGCGGGAGACGGGGGCCCCGTGGACGGAGACGGA
GAAGGGGGAGCGGAGGGGGGCCGGCTAGTGGTGGCGGTTGGGGACTCGCT
CACGGGGGCGGCGCTCCTGCAGAGCCTTTTCGAGGAGCCCGCCGTGGTGC
AGCTCGCGTCGCACGGGCTCATGCGCGAGACCGCGTACGTCAATCGGGCG
GCGTTTCAGGTGTGTGTGTATGTAGGTTAGCAAAGTTTTTTGAATCAGGA
TAAATAACTCAGAGACCGGGCGGGCGTGAAAAAAAAAGGGGGAATTAATT
GACCACCGGTCGATCCAACCCGACGCAAAAAAACGGCAGTCCGTACGTGG
AAAATACCTGAAAACTAGGCCGACAAAGTCGCCAGCTGGGGCGCTAAGTT
CGTGATTGCTGTATGTATGTACATATGCCAATCTGATTCTTGTTGGCCAG
GGCCAAACCGGCCGCGTCTACCTCCACACATAGAGGAGTGCTATTGCATT
GCTTGCTGCTGTAATGAAGTATCGATTTCTCCCTGGGGTTCTCAACATCG
TTCAGCCGTGTCCATGCACGCGATGCACCCCGTGCGCGATGCACCCCAGT
GTGCGCTGGATGCATCGATCGCTGCGCCGGGTGCGAGCGCCACATATACA
CATACACCGCCGTCGCCCACAGGCAGGGTGGGCGGGGGCTCTAACCGCAG
CCGGTTGTGGCGCACGCGCGGCGGTATTTTGGTCGCCGGGGAAGTCTAGA
CTTGCTCGACATCGTTCAGCGCATTCGTTCCGCGTTGTGCGGGCATTCCG
GTCGTTGTCGTTCTTTTCTCTTTGCATAATATACTCCGTACCATACATAG
CAAGGGTGTCTCATGATTACGACTCTTTATGTATGTACTCTCTTCTGCTC
TCTCTCCCCCCCCCCCCCCCCCCTCCTTCTGTCTCCCCCACCCACCCATC
CCCCCCCCTTCTCTCCAACCCGCCGGTCAGGCTGCGTGCGACATTCTGGA
GTGGGCCGGGCCCTTCATCAAGGCGTCGGTCGAGCATGGCGGGCCGTTCG
AGGGCTACCGCGTGCACTGCGCAGGGCACTCCTTCGGGGGAGCGGTGGCG
GCCTGCCTCGCGGGATTGCTCGACGGCGCGATAGACGTGGAGGCGTCCAG
CGCCGGTGGCGGCGACGGCGGCGACGGCAGGCGGAGGGGGAGTAGGCGGG
GAGAAAGCAGAAGACCGGGCGGGAGTGGAAGAGGAGAAGCACCGGCTGCG
GCGGGCAGACGGCGGTCGCCGGGGAGTGGGGAGAAGCGGAGCGAGGCGTT
CCGAGATCGGCGGCCGATAAAGAAAGGCGGCATCAGCGGCGGCGGCGGTG
CTGGTAGCGGCGGCAGCAGCCGTAGACGGCTGTCGGATGCTTCCTCCTCC
TCCTCCTCCTCTTCGTCTTCCTTTCCCGAAGAGTCGGAGGCGAGCGGCAG
CGAGGAGGGGGGCGCCGTGGTGCGGGTGGACGGGGCCGCGCCGTGGGTGG
CCGCCTGCCGGGACAGGGTGACGTGCGTCACGCTGGGGTGCCCCCCGTGC
CTGTCCCAGAACCTGCGGCTCCCCTTCGTGACCTCGTTCGTGCTCGGCGA
CGACATGGTGCCCAGGACGAGCCACGAGTCTCTGCGAAGGCTCAAGCGTA
GATTGCTGCAGGCAAGCTGTTGTTGCTGTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig84:4635..9316+

>mRNA_L-elsbetiae_contig84.17403.1 ID=mRNA_L-elsbetiae_contig84.17403.1|Name=mRNA_L-elsbetiae_contig84.17403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3396bp|location=Sequence derived from alignment at L-elsbetiae_contig84:4635..9316+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTCGGCATCATCGAAGATCACGATGTTGGCTTGTGGCTTTTGGCGG
AAGCTTGGTATGCTGGGCGGCTTCGGCGGCGGACCCGTTGCCTCAGCAAG
TGGAGCATCCCTTCCGAAACCTGGCAGCTTGGCTCCGTGAGATGGTTCGG
CATCATCGAAGATCACGATGTTGGCTTGTGGCTTTTGGCGGAAGCTTGGT
ATGCTGGGCGGCTTCGGCGGCGGACCCGTTGCCTCAGCAAGTGGAGCATC
CCTTCCGAAACCTGGCAGCTTGGCTCCGTGAGGCATCCCCTGACATGAGG
TCAGCAGACCCCAAGGCAATATCCAGAGGAATAACCGTGCTGAGCAATTC
GCAGAGCTACGTGAAATCTTTCGATGGCATGGCCTACGAGCTCAAGGGCA
AGATCAAGGAGGGCGGGAGCACTGCCGACATCGACAAGGCATCCCCTGAC
ATGAGGTCAGCAGACCCCAAGGCAATATCCAGAGGAATAACCGTGCTGAG
CAATTCGCAGAGCTACGTGAAATCTTTCGATGGCATGGCCTACGAGCTCA
AGGGCAAGATCAAGGAGGGCGGGAGCACTGCCGACATCGACAAGCTCCTG
CAGCAGGCGGAGCTCTACGAGAGCGAGTCCAGCGCCAAGAAGGCCGGCAA
GCTTGTGAGGCTCTTGATCGAGGTGGAGCGGTCGCTCAACTCCGCAGAGG
CCGCCGAAATCGCGTCGCAATCCGACCCCGCCCGCGCGGCGCGGTACATG
AAGGACGCAGGGCTGCGGCTTCTACCCGAGCCGCCGCCGCCGCCGCCGCC
GCCGCCGCCTACCGAGGATAAAAATGCAACCGCAGCTACCTCTGCCGAGA
GCTCAGCCACCCCCACGGACGTGGCGTCCAAGGTCCGCGCGCGATCGCGA
GACAGGTCGTCGACAGCGAAGACAGCGGCAGCAAAGACGGCAGCAGAGAG
ACGACGACCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCG
CAGCAGCAGCAGCAGCAGAGCGTGACAGTCGCGGCCAGAAGAAGAATACC
AAGAAGAAAAGCAGCAAGCGGAGGAGGAGCGTCGCTGCTGCCGAAGAAGG
CGGAAGCAGCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGG
CGGCGACCCTTGGGGAGCCGCTCGAGACGTTCGTCGTCACGGTGGCCGGG
TGCGAGGTGCGGTGCCTCTTGATGCTGGAGGAGCGCGCGGGAGACGGGGG
CCCCGTGGACGGAGACGGAGAAGGGGGAGCGGAGGGGGGCCGGCTAGTGG
TGGCGGTTGGGGACTCGCTCACGGGGGCGGCGCTCCTGCAGAGCCTTTTC
GAGGAGCCCGCCGTGGTGCAGCTCGCGTCGCACGGGCTCATGCGCGAGAC
CGCGTACGTCAATCGGGCGGCGTTTCAGCTCCTGCAGCAGGCGGAGCTCT
ACGAGAGCGAGTCCAGCGCCAAGAAGGCCGGCAAGCTTGTGAGGCTCTTG
ATCGAGGTGGAGCGGTCGCTCAACTCCGCAGAGGCCGCCGAAATCGCGTC
GCAATCCGACCCCGCCCGCGCGGCGCGGTACATGAAGGACGCAGGGCTGC
GGCTTCTACCCGAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTACCGAG
GATAAAAATGCAACCGCAGCTACCTCTGCCGAGAGCTCAGCCACCCCCAC
GGACGTGGCGTCCAAGGTCCGCGCGCGATCGCGAGACAGGTCGTCGACAG
CGAAGACAGCGGCAGCAAAGACGGCAGCAGAGAGACGACGACCCTCTTCT
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCAGCAGCAGCAGCAGC
AGAGCGTGACAGTCGCGGCCAGAAGAAGAATACCAAGAAGAAAAGCAGCA
AGCGGAGGAGGAGCGTCGCTGCTGCCGAAGAAGGCGGAAGCAGCGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGCGGCGACCCTTGGGGA
GCCGCTCGAGACGTTCGTCGTCACGGTGGCCGGGTGCGAGGTGCGGTGCC
TCTTGATGCTGGAGGAGCGCGCGGGAGACGGGGGCCCCGTGGACGGAGAC
GGAGAAGGGGGAGCGGAGGGGGGCCGGCTAGTGGTGGCGGTTGGGGACTC
GCTCACGGGGGCGGCGCTCCTGCAGAGCCTTTTCGAGGAGCCCGCCGTGG
TGCAGCTCGCGTCGCACGGGCTCATGCGCGAGACCGCGTACGTCAATCGG
GCGGCGTTTCAGGCTGCGTGCGACATTCTGGAGTGGGCCGGGCCCTTCAT
CAAGGCGTCGGTCGAGCATGGCGGGCCGTTCGAGGGCTACCGCGTGCACT
GCGCAGGGCACTCCTTCGGGGGAGCGGTGGCGGCCTGCCTCGCGGGATTG
CTCGACGGCGCGATAGACGTGGAGGCGTCCAGCGCCGGTGGCGGCGACGG
CGGCGACGGCAGGCGGAGGGGGAGCTGCGTGCGACATTCTGGAGTGGGCC
GGGCCCTTCATCAAGGCGTCGGTCGAGCATGGCGGGCCGTTCGAGGGCTA
CCGCGTGCACTGCGCAGGGCACTCCTTCGGGGGAGCGGTGGCGGCCTGCC
TCGCGGGATTGCTCGACGGCGCGATAGACGTGGAGGCGTCCAGCGCCGGT
GGCGGCGACGGCGGCGACGGCAGGCGGAGGGGGAGCGGCATCAGCGGCGG
CGGCGGTGCTGGTAGCGGCGGCAGCAGCCGTAGACGGCTGTCGGATGCTT
CCTCCTCCTCCTCCTCCTCTTCGTCTTCCTTTCCCGAAGAGTCGGAGGCG
AGCGGCAGCGAGGAGGGGGGCGCCGTGGTGCGGGTGGACGGGGCCGCGCC
GTGGGTGGCCGCCTGCCGGGACAGGGTGACGTGCGTCACGCTGGGGTGCC
CCCCGTGCCTGTCCCAGAACCTGCGGCTCCCCTTCGTGACCTCGTTCGTG
CTCGGCGACGACATGGTGCCCAGGACGAGCCACGAGTCTCTGCGAAGGCT
CAAGCGTAGATTGCTGCAGGCAAGCTGTTGTTGCTGTTGAGCGGCATCAG
CGGCGGCGGCGGTGCTGGTAGCGGCGGCAGCAGCCGTAGACGGCTGTCGG
ATGCTTCCTCCTCCTCCTCCTCCTCTTCGTCTTCCTTTCCCGAAGAGTCG
GAGGCGAGCGGCAGCGAGGAGGGGGGCGCCGTGGTGCGGGTGGACGGGGC
CGCGCCGTGGGTGGCCGCCTGCCGGGACAGGGTGACGTGCGTCACGCTGG
GGTGCCCCCCGTGCCTGTCCCAGAACCTGCGGCTCCCCTTCGTGACCTCG
TTCGTGCTCGGCGACGACATGGTGCCCAGGACGAGCCACGAGTCTCTGCG
AAGGCTCAAGCGTAGATTGCTGCAGGCAAGCTGTTGTTGCTGTTGA
back to top