mRNA_L-elsbetiae_contig8392.17396.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8392.17396.1
Unique NamemRNA_L-elsbetiae_contig8392.17396.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8392.17396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8392contigL-elsbetiae_contig8392:3806..6543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2738
Cds size1584
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8392.17396.1prot_L-elsbetiae_contig8392.17396.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8392 4014..5597 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816921.2944503-UTR-L-elsbetiae_contig8392:3805..40131622816921.2944503-UTR-L-elsbetiae_contig8392:3805..4013Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8392 3806..4013 +
1691683913.830064-UTR-L-elsbetiae_contig8392:3805..40131691683913.830064-UTR-L-elsbetiae_contig8392:3805..4013Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8392 3806..4013 +
1622816921.3167331-UTR-L-elsbetiae_contig8392:5597..65431622816921.3167331-UTR-L-elsbetiae_contig8392:5597..6543Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8392 5598..6543 +
1691683913.8607676-UTR-L-elsbetiae_contig8392:5597..65431691683913.8607676-UTR-L-elsbetiae_contig8392:5597..6543Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8392 5598..6543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816921.3062496-CDS-L-elsbetiae_contig8392:4013..55971622816921.3062496-CDS-L-elsbetiae_contig8392:4013..5597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8392 4014..5597 +
1691683913.8458214-CDS-L-elsbetiae_contig8392:4013..55971691683913.8458214-CDS-L-elsbetiae_contig8392:4013..5597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8392 4014..5597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8392.17396.1

>prot_L-elsbetiae_contig8392.17396.1 ID=prot_L-elsbetiae_contig8392.17396.1|Name=mRNA_L-elsbetiae_contig8392.17396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=528bp
MWPASLRKLSFGASFNQPIAGVVWPTSLQQLAFWGGRFNQPIVGVVWPAS
LQQLTFGKNFKNPIAGVVWPASLQQLSFGFAFNQPITEVVWPASLQELTF
CGWFDRSIDGVVWPASLQQLSFGFSFNQPIEGVIWPASLQHLTFGAAFNH
LIADVVWPTSLQELTFGASLNQPIVGVVWPASLQKLSFGYDFNKPIAGVV
WPASLQQLTFSGKFNQPILGVVWPASLQQLSFGNNFDHSINGVVWPDSLQ
QLSLGSSFNQPIAGVVWPASVQKLHLGRSFNQLIAGVVWPDSLQQLSFGE
NFNQHIVGVVWPAHLQRLAFESGFNTPIAGAAWPASLQQLSFGHWFNQPI
AGVEWPASLEQLSFGRSFNQPVAGITWPASLELLSFGEMFDQPVNGVVWP
ASLTELRFGDCFDHPIAGVDWPASLRKLSFGKMFDQPITRVVWPDALQQL
LFGDRFNQRIGGIMWPASLEHLSFGRCFKQSIGGYPWPPDLVWPASLRSL
TLAGYNTLERIREYRKMDAFMKGSIWP*
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mRNA from alignment at L-elsbetiae_contig8392:3806..6543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8392.17396.1 ID=mRNA_L-elsbetiae_contig8392.17396.1|Name=mRNA_L-elsbetiae_contig8392.17396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2738bp|location=Sequence derived from alignment at L-elsbetiae_contig8392:3806..6543+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGCCATTCCCCGTGCGCTGCGTAACAGTTGTGAGATGGCCGGAGCGTG
TTCTGCCATGCCGTCCCGACGGAGAAGATCAATTGAGTCACGTTCGGCGG
CTGGTTCGGTTTGGGTCTTATTGGTTTGGATGGGGCCCACTGTGGTGGCC
AGACACCTTGCAGGAAGTGAGATTCGGAGACAGCTTCGACGGACCTGTCG
ATGGTTTGATGTGGCCAGCTTCGTTGCGGAAACTATCGTTCGGGGCTTCC
TTTAACCAGCCCATCGCCGGAGTTGTGTGGCCAACCTCCCTGCAACAACT
GGCTTTCTGGGGCGGGAGGTTTAACCAGCCCATCGTCGGAGTTGTGTGGC
CGGCCTCTCTGCAGCAGCTGACGTTCGGGAAAAATTTCAAAAATCCTATC
GCTGGCGTTGTGTGGCCGGCCTCTCTGCAGCAGCTATCGTTCGGGTTTGC
CTTCAACCAGCCCATCACCGAAGTTGTGTGGCCGGCCTCTCTGCAAGAGC
TGACTTTCTGCGGTTGGTTCGACCGGTCCATCGATGGAGTGGTGTGGCCG
GCTTCTCTGCAGCAGCTATCGTTCGGGTTTAGTTTTAACCAACCTATTGA
AGGAGTTATTTGGCCGGCCTCTCTGCAACATCTGACATTCGGGGCTGCCT
TCAATCACCTCATCGCTGATGTTGTGTGGCCGACTTCTCTGCAAGAGCTG
ACATTTGGGGCTTCCTTGAATCAGCCCATCGTCGGGGTTGTGTGGCCGGC
CTCCCTGCAGAAGCTCTCGTTCGGGTATGATTTCAACAAGCCGATCGCCG
GAGTTGTGTGGCCCGCTTCCCTGCAACAGCTGACTTTCTCGGGTAAGTTT
AACCAGCCCATCTTAGGAGTCGTGTGGCCGGCTTCTCTGCAACAGCTGAG
TTTCGGGAACAATTTCGACCATTCTATCAACGGAGTTGTGTGGCCGGACT
CCCTACAGCAGCTATCGCTTGGGAGTAGTTTCAACCAGCCCATCGCTGGT
GTTGTGTGGCCGGCCTCTGTTCAAAAGCTACACCTCGGCCGTAGCTTTAA
TCAGCTCATCGCCGGAGTTGTGTGGCCGGACTCCCTGCAGCAGCTATCGT
TCGGAGAGAACTTCAACCAGCACATCGTCGGAGTCGTTTGGCCAGCTCAT
CTGCAACGCCTGGCGTTCGAGAGTGGGTTCAACACACCCATCGCCGGGGC
TGCATGGCCCGCGTCCTTGCAGCAGCTATCGTTCGGCCACTGGTTCAACC
AGCCCATCGCTGGAGTTGAGTGGCCTGCCTCCCTGGAACAACTGTCGTTT
GGGCGTAGCTTCAACCAGCCCGTTGCCGGGATCACATGGCCGGCCTCCCT
GGAGCTGTTGTCGTTCGGAGAAATGTTCGACCAGCCTGTCAACGGAGTCG
TGTGGCCGGCGTCCTTAACTGAGTTGCGGTTCGGAGATTGTTTCGACCAC
CCTATCGCCGGGGTTGACTGGCCAGCGTCCCTGCGGAAGTTATCCTTTGG
GAAAATGTTCGACCAACCGATTACCAGAGTCGTGTGGCCTGACGCTCTCC
AGCAGCTGTTATTCGGGGACAGATTCAACCAACGAATCGGCGGAATTATG
TGGCCGGCTTCCCTGGAGCACCTGTCATTCGGACGATGCTTCAAACAGTC
CATCGGCGGGTACCCGTGGCCGCCCGACTTGGTGTGGCCGGCCTCCTTGC
GGAGTTTGACTCTGGCAGGGTATAACACGCTCGAACGCATTCGAGAATAC
CGTAAAATGGATGCATTTATGAAAGGCAGCATTTGGCCGTAGCTAGCAGG
CACGTACTACTGTAATAGGCATTGTGTGTATACGTGATTTTGGTGTCGTA
AGCAACTACCGTTTGAAAAGTGTACACAGTCAAATTTCTGCAAACATTGC
TTGTAGTTGTGTGGGCGCACAATGATTTTGTCCACGGTAGGGATGGAATC
TTTGTGCTCTGTTAAGGGCCGCCAGTGCACTTTCAGGGCATGTTTCGATG
ATCCCACGCCCAACTACTGTGCTTGCAAATAAGGCGTGGTACATAGAGCA
GGGGGTTGGTTTGGAAAACATAATAAGCCAAAAGCTCACGTATCGGGTTG
ACGTTACTGCTGTAGTATGGAGTTATCTCAACGAGATTTTACTACTGTTG
TAGTTCCGGCCTACTAGATAAGTGAAGCCGGGAAAAGCAATTTCGATCTG
GGGCAGTACTATCGTAACGAGTAAACGCTACGACGCCGCGATTGACGCCT
ACTGGGCACCGGCACTACATAAAACGATTTCGGCGTGGATCAAATGCCGG
TGATGCGGCAGTGTTGGGGCTGGCAGAGGTTTAGAAGGAGGTTGGATCTC
TCTCTGCCTTTGTGTGAGTGTGGGGTGATCTTCAGGCTGAGCACCCGTCG
TATGTATCGAATGTATCGCCGTGCTTGGACGGGTAACTACATATTATCTA
GGTGTCAGTACATAAATTGGTCCCCGTCTGATTTGTTTTGGAAACTTCAA
GCTAAATATCTATCTAGATATAGTCTATATATGGACGAACAATATACATG
GATTGCATCGACTGAAGGCGCGGAACACGTGTGAGGAATCATAGATTTCA
AACGTGGCCACTATGCTCTCCAAGAGGGTTGGGATGAATCCTGTGGCATT
TCGCACCCCTGCCAGGGCAAAAAGTGGCCACGTGTAAATGGCCTCGAGCC
ACAAACGGTGTACTGGTTGTGTTGAGTTGTGGTGGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8392:3806..6543+

>mRNA_L-elsbetiae_contig8392.17396.1 ID=mRNA_L-elsbetiae_contig8392.17396.1|Name=mRNA_L-elsbetiae_contig8392.17396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3168bp|location=Sequence derived from alignment at L-elsbetiae_contig8392:3806..6543+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGCCAGCTTCGTTGCGGAAACTATCGTTCGGGGCTTCCTTTAACCA
GCCCATCGCCGGAGTTGTGTGGCCAACCTCCCTGCAACAACTGGCTTTCT
GGGGCGGGAGGTTTAACCAGCCCATCGTCGGAGTTGTGTGGCCGGCCTCT
CTGCAGCAGCTGACGTTCGGGAAAAATTTCAAAAATCCTATCGCTGGCGT
TGTGTGGCCGGCCTCTCTGCAGCAGCTATCGTTCGGGTTTGCCTTCAACC
AGCCCATCACCGAAGTTGTGTGGCCGGCCTCTCTGCAAGAGCTGACTTTC
TGCGGTTGGTTCGACCGGTCCATCGATGGAGTGGTGTGGCCGGCTTCTCT
GCAGCAGCTATCGTTCGGGTTTAGTTTTAACCAACCTATTGAAGGAGTTA
TTTGGCCGGCCTCTCTGCAACATCTGACATTCGGGGCTGCCTTCAATCAC
CTCATCGCTGATGTTGTGTGGCCGACTTCTCTGCAAGAGCTGACATTTGG
GGCTTCCTTGAATCAGCCCATCGTCGGGGTTGTGTGGCCGGCCTCCCTGC
AGAAGCTCTCGTTCGGGTATGATTTCAACAAGCCGATCGCCGGAGTTGTG
TGGCCCGCTTCCCTGCAACAGCTGACTTTCTCGGGTAAGTTTAACCAGCC
CATCTTAGGAGTCGTGTGGCCGGCTTCTCTGCAACAGCTGAGTTTCGGGA
ACAATTTCGACCATTCTATCAACGGAGTTGTGTGGCCGGACTCCCTACAG
CAGCTATCGCTTGGGAGTAGTTTCAACCAGCCCATCGCTGGTGTTGTGTG
GCCGGCCTCTGTTCAAAAGCTACACCTCGGCCGTAGCTTTAATCAGCTCA
TCGCCGGAGTTGTGTGGCCGGACTCCCTGCAGCAGCTATCGTTCGGAGAG
AACTTCAACCAGCACATCGTCGGAGTCGTTTGGCCAGCTCATCTGCAACG
CCTGGCGTTCGAGAGTGGGTTCAACACACCCATCGCCGGGGCTGCATGGC
CCGCGTCCTTGCAGCAGCTATCGTTCGGCCACTGGTTCAACCAGCCCATC
GCTGGAGTTGAGTGGCCTGCCTCCCTGGAACAACTGTCGTTTGGGCGTAG
CTTCAACCAGCCCGTTGCCGGGATCACATGGCCGGCCTCCCTGGAGCTGT
TGTCGTTCGGAGAAATGTTCGACCAGCCTGTCAACGGAGTCGTGTGGCCG
GCGTCCTTAACTGAGTTGCGGTTCGGAGATTGTTTCGACCACCCTATCGC
CGGGGTTGACTGGCCAGCGTCCCTGCGGAAGTTATCCTTTGGGAAAATGT
TCGACCAACCGATTACCAGAGTCGTGTGGCCTGACGCTCTCCAGCAGCTG
TTATTCGGGGACAGATTCAACCAACGAATCGGCGGAATTATGTGGCCGGC
TTCCCTGGAGCACCTGTCATTCGGACGATGCTTCAAACAGTCCATCGGCG
GGTACCCGTGGCCGCCCGACTTGGTGTGGCCGGCCTCCTTGCGGAGTTTG
ACTCTGGCAGGGTATAACACGCTCGAACGCATTCGAGAATACCGTAAAAT
GGATGCATTTATGAAAGGCAGCATTTGGCCGTAGATGTGGCCAGCTTCGT
TGCGGAAACTATCGTTCGGGGCTTCCTTTAACCAGCCCATCGCCGGAGTT
GTGTGGCCAACCTCCCTGCAACAACTGGCTTTCTGGGGCGGGAGGTTTAA
CCAGCCCATCGTCGGAGTTGTGTGGCCGGCCTCTCTGCAGCAGCTGACGT
TCGGGAAAAATTTCAAAAATCCTATCGCTGGCGTTGTGTGGCCGGCCTCT
CTGCAGCAGCTATCGTTCGGGTTTGCCTTCAACCAGCCCATCACCGAAGT
TGTGTGGCCGGCCTCTCTGCAAGAGCTGACTTTCTGCGGTTGGTTCGACC
GGTCCATCGATGGAGTGGTGTGGCCGGCTTCTCTGCAGCAGCTATCGTTC
GGGTTTAGTTTTAACCAACCTATTGAAGGAGTTATTTGGCCGGCCTCTCT
GCAACATCTGACATTCGGGGCTGCCTTCAATCACCTCATCGCTGATGTTG
TGTGGCCGACTTCTCTGCAAGAGCTGACATTTGGGGCTTCCTTGAATCAG
CCCATCGTCGGGGTTGTGTGGCCGGCCTCCCTGCAGAAGCTCTCGTTCGG
GTATGATTTCAACAAGCCGATCGCCGGAGTTGTGTGGCCCGCTTCCCTGC
AACAGCTGACTTTCTCGGGTAAGTTTAACCAGCCCATCTTAGGAGTCGTG
TGGCCGGCTTCTCTGCAACAGCTGAGTTTCGGGAACAATTTCGACCATTC
TATCAACGGAGTTGTGTGGCCGGACTCCCTACAGCAGCTATCGCTTGGGA
GTAGTTTCAACCAGCCCATCGCTGGTGTTGTGTGGCCGGCCTCTGTTCAA
AAGCTACACCTCGGCCGTAGCTTTAATCAGCTCATCGCCGGAGTTGTGTG
GCCGGACTCCCTGCAGCAGCTATCGTTCGGAGAGAACTTCAACCAGCACA
TCGTCGGAGTCGTTTGGCCAGCTCATCTGCAACGCCTGGCGTTCGAGAGT
GGGTTCAACACACCCATCGCCGGGGCTGCATGGCCCGCGTCCTTGCAGCA
GCTATCGTTCGGCCACTGGTTCAACCAGCCCATCGCTGGAGTTGAGTGGC
CTGCCTCCCTGGAACAACTGTCGTTTGGGCGTAGCTTCAACCAGCCCGTT
GCCGGGATCACATGGCCGGCCTCCCTGGAGCTGTTGTCGTTCGGAGAAAT
GTTCGACCAGCCTGTCAACGGAGTCGTGTGGCCGGCGTCCTTAACTGAGT
TGCGGTTCGGAGATTGTTTCGACCACCCTATCGCCGGGGTTGACTGGCCA
GCGTCCCTGCGGAAGTTATCCTTTGGGAAAATGTTCGACCAACCGATTAC
CAGAGTCGTGTGGCCTGACGCTCTCCAGCAGCTGTTATTCGGGGACAGAT
TCAACCAACGAATCGGCGGAATTATGTGGCCGGCTTCCCTGGAGCACCTG
TCATTCGGACGATGCTTCAAACAGTCCATCGGCGGGTACCCGTGGCCGCC
CGACTTGGTGTGGCCGGCCTCCTTGCGGAGTTTGACTCTGGCAGGGTATA
ACACGCTCGAACGCATTCGAGAATACCGTAAAATGGATGCATTTATGAAA
GGCAGCATTTGGCCGTAG
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