mRNA_L-elsbetiae_contig8391.17393.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8391.17393.1
Unique NamemRNA_L-elsbetiae_contig8391.17393.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8391.17393.1 vs. uniprot
Match: D7FXM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM6_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 7.880e-47
Identity = 115/196 (58.67%), Postives = 126/196 (64.29%), Query Frame = 1 
Query:    4 EVSRLLRSWFGLDEFLCLHEAASPTSPSSSPSSRGASRLSLEQLLSTGVVAAEGRRRCGAVLAVGW-PDGSHHHSRGRXXXXXXXXXXGHDHHQGVSVKGYATLPPAGDNXXXXXXXEIGAAWTRRAETVRLESQASSSAVPRSPFRRRWSLEAFGDLLEDKALSAWGPRRGAGGRLEASARYTWERLLYDGRVLG 588
            E   LLRSWFG  + LCLHEAA+  + SS       + LSLEQLLSTGV+A E RR CGAVLA+   P G  +  RGR               +GVSVKGYATL P G            A WTRRAETVRLES+ASS  VPRS    R SLEA G+LL DKALSAWG RRG GGRLEASARYTWER L+DGRVLG
Sbjct:  151 EAWHLLRSWFGFGDLLCLHEAATKPASSSRSGDGAGTGLSLEQLLSTGVMAMEDRR-CGAVLAMQQQPGGDGNGRRGRGSRDSASR-------RGVSVKGYATLSPTGH-----------ADWTRRAETVRLESEASS-VVPRS----RLSLEALGELLTDKALSAWG-RRGYGGRLEASARYTWERRLFDGRVLG 321
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BLAST of mRNA_L-elsbetiae_contig8391.17393.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.390e-43
Identity = 112/192 (58.33%), Postives = 122/192 (63.54%), Query Frame = 1 
Query:   16 LLRSWFGLDEFLCLHEAASPTSPSSSPSSRGASRLSLEQLLSTGVVAAEGRRRCGAVLAVGW-PDGSHHHSRGRXXXXXXXXXXGHDHHQGVSVKGYATLPPAGDNXXXXXXXEIGAAWTRRAETVRLESQASSSAVPRSPFRRRWSLEAFGDLLEDKALSAWGPRRGAGGRLEASARYTWERLLYDGRVLG 588
            LLRSWFG  + LCLHEAA+  + SS       + LSLEQLLSTGV+A E RR CGAVLA+   P G     RGR               +GVSVKGYATL P G            A WTRRAETV LES+ASS A+PRS    R SLEA G+LL DKALSAWG R G GG LEASARYTWER LYDGRVLG
Sbjct:  154 LLRSWFGFGDLLCLHEAATNPASSSRSGDGAGTVLSLEQLLSTGVMAMEDRR-CGAVLAMQQQPGGDGDGRRGRCSRDSASR-------RGVSVKGYATLSPIGH-----------ADWTRRAETVCLESEASS-AIPRS----RLSLEALGELLTDKALSAWG-RWGYGGLLEASARYTWERRLYDGRVLG 320
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8391.17393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXM6_ECTSI7.880e-4758.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3A9_9PHAE1.390e-4358.33Rab3 GTPase-activating protein catalytic subunit n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8391contigL-elsbetiae_contig8391:261..4204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab3 GTPase-activating protein catalytic subunit
Ec32 orthologEc-28_002310.1
Exons4
Model size593
Cds size591
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8391.17393.1prot_L-elsbetiae_contig8391.17393.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8391 263..4204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816921.2326818-CDS-L-elsbetiae_contig8391:262..5701622816921.2326818-CDS-L-elsbetiae_contig8391:262..570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8391 263..570 -
1691683913.7795067-CDS-L-elsbetiae_contig8391:262..5701691683913.7795067-CDS-L-elsbetiae_contig8391:262..570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8391 263..570 -
1622816921.2443469-CDS-L-elsbetiae_contig8391:1214..13911622816921.2443469-CDS-L-elsbetiae_contig8391:1214..1391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8391 1215..1391 -
1691683913.7925322-CDS-L-elsbetiae_contig8391:1214..13911691683913.7925322-CDS-L-elsbetiae_contig8391:1214..1391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8391 1215..1391 -
1622816921.2559414-CDS-L-elsbetiae_contig8391:3137..32141622816921.2559414-CDS-L-elsbetiae_contig8391:3137..3214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8391 3138..3214 -
1691683913.8046026-CDS-L-elsbetiae_contig8391:3137..32141691683913.8046026-CDS-L-elsbetiae_contig8391:3137..3214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8391 3138..3214 -
1622816921.2671332-CDS-L-elsbetiae_contig8391:4175..42041622816921.2671332-CDS-L-elsbetiae_contig8391:4175..4204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8391 4176..4204 -
1691683913.8178363-CDS-L-elsbetiae_contig8391:4175..42041691683913.8178363-CDS-L-elsbetiae_contig8391:4175..4204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8391 4176..4204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8391.17393.1

>prot_L-elsbetiae_contig8391.17393.1 ID=prot_L-elsbetiae_contig8391.17393.1|Name=mRNA_L-elsbetiae_contig8391.17393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=197bp
EEVSRLLRSWFGLDEFLCLHEAASPTSPSSSPSSRGASRLSLEQLLSTGV
VAAEGRRRCGAVLAVGWPDGSHHHSRGRHHHHGHRKRRGHDHHQGVSVKG
YATLPPAGDNGGGGGGGEIGAAWTRRAETVRLESQASSSAVPRSPFRRRW
SLEAFGDLLEDKALSAWGPRRGAGGRLEASARYTWERLLYDGRVLGV
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mRNA from alignment at L-elsbetiae_contig8391:261..4204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8391.17393.1 ID=mRNA_L-elsbetiae_contig8391.17393.1|Name=mRNA_L-elsbetiae_contig8391.17393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3944bp|location=Sequence derived from alignment at L-elsbetiae_contig8391:261..4204- (Laminarionema elsbetiae ELsaHSoW15)
GAGGAGGTGTCGCGTCTACTTCGCAGCTGGTGCGTTCTGCCTGCTGCGTG
CGGAACGGGGGGTGGTTGGGCACGGGGGGAGGCATCAAGGGCAGTTGCCG
GCGTTTGTTTCTATGTGGTGGGGTTCGTAGTGGTCACGGTGAGGCTGACT
GGCCGGCAAGTGGGTAGCCAGCTGTAGCCAGCTGTAGCCAGCTGTAGCCA
GCTGTAGCCAGCTGTAGCCAGCTGTAGCCAGCTGTAGCCAATTTAGCTAG
ACGGGTTGTACATATCCACAAGCATCGTGGCCGACACGCGAATTGTTGTG
GGAGGTGAACGTGAGAAAAGGCGGGGGCGGGGGGGTTGAGAGGATGGGGG
TAGGTACCCCCTTTTGGTTGATTTGCATCGGCGGCCTTTTTTTTTGCCAT
TGAGTGAGCATCCTGTTAGAGACGTAGTTCCCGTTTGGGTCTCTGGCCCG
AAAAGCGTATCGAATTAATTTGTTGCCTCCGTCCGGACCGGAAAAGTGGC
TAGTTTTGCAGTGTCACGGTGTAACTGGTGCTGGTGCTGGCACGAGTGCT
GGTGCCACTGCTGCTGTCATGGTAGAGCGATGCCGGCCGGAGAGGTTTTT
AGCGACAAGGATAAAACAAGCTCTCTGCCATAGATGCAAATCAGTCCTAA
CCGGCTGTCCGTAAACAAAGAGAAACCAATAGATATACATTAAAAATAAA
CTCTGGAACATCGTGGCTTCCGAGTTGGATACCATAGATACAACAAGACA
GCGTAGACCCGGTTCGGATTGCCAGACAAAAAAACTGCTAGCTAGGTACC
TCGTATGCAGCAGCAGCAGTCGCAGGAGATAGTCCCCCTTTGTGTGCGGA
GCAGCAGGGGTCAACAGCGTACCAACACGCGAGATTTTCGTCTTCGTCGT
CGTCGCCATCGTCGTTATTTTTTGTTACTCGGGTGGAGGTGGGGGCGTTT
CTCACTCATTCTGCTGCGTCTGTTGGTGGAACAAACGCAGGTTTGGCCTG
GACGAGTTCCTCTGTCTGCACGAAGCGGCGAGCCCGACATCGCCATCTTC
TTCGCCATCGTCCCGTGGTGAGTCGGTTGGGTTCGGGGGCTTCGGCCTTC
TCCTCCGGGTGGGGGGGGGGGGGACGTGCCATGTACGTAGTCTCACACTT
AACTGCCAGGAACCAATACGATTCATCGCTTTCGGCCTCTACCCCACTGC
ATGCCTTAGGCGCTGTGTGGGTGCCCTCTATCTACATGCCCCCATCTCTC
TCCATGGAGGTTTCTCTGTGTTTGCCTCTTCCCTCCCCTTCCTCCCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTTTCGTCTTTTTCT
CTCTCTCGAGACAGACGCGGAGGCATGCATGCATAGACAAGATAAATATG
ACATACGAGAGCAGCAGCAGCAGCAGCAGCAATTTGTTTGAAACCCTTCT
TGCAAAAAATAGCTCTCCCAGAGCACGAGTTCGTTACCTCGGAGGCGGGG
GGGGGGGGCTTTTTGTGTGTTCTGTGTGTCAACCATGCGGATTAAAAAAG
TGGAGGGTTGGGTGGGTGGGGGGGCATGATGGCCCCGTCCATGCTTTGAT
GTGTGTTAGTCCGAAACTCGTTGTTGGCTGCTGGAATGTGGCATTGTGAT
ACGTATCGGTAAGCCTGCGTTTGTATCTATGGTTCCCTTGCAACCAATAC
CCCGATTCGGAAAAGCGCGACTGCACACCACCAGTAGGGGAAAGGCAGCG
AGACAACCTCTCACCGCACTTGCTGTTGCTCAGCGTAGTGTCTTATCAAA
TCAAATGATGTCGTGCAACAAAATAATTATCCCTTAACGCGCCTCTGAGC
TCTTGTGTCTGTCGCATGCTACCGGCTTGTACGTACATACATACATGTTG
CACCACCTTATGTACATATTTACATACATACCAGGCACTCGGAGAGGCCA
TCGCGAGGTGTGCGGGGGACCGGTCCCTTTGAAAAGCACGAGGATGAATG
AAGCGACCTCCCTTTCATCGAGTACACACTCGAACCTGAAAGAAGATGAA
AACATCGGAGATTGCACCGTCGTGGAGGCCCCCCCCCCCCCCCCCCCCCA
CGACCCGCTGCACCCCAAGACTAGACTGCCCCAACCAGTTTTGTGCCGAG
CCGACAGCCGTTTGTTTCGATCAATGAATGCATCAGTGCCGCCGCCCTCA
CCTGCCATGGGCCACGAGCCTGCTGCCAGTCGCTGGCCGCTTCTTTTCGC
TTGTCTGCTGTCTCTTTAAAAATAAACAAAGAATCAAAGATGGAACCTAC
CCCGCACTAGAGCAAAGACTCGATATGGGGTTCAAACGGTATTCCATACA
GAGACGTAATATTTGGCGAAGCGAGCAGAAAAACAACCTAAATATCAGAA
GAATTCAACATCTCCCCTGCAAAGATTTAAGATTTGCGAGGTCGGCCAAC
AATTATTCAGGCGGGTAGATCTTTTGTTGTCCGCGCCCCAACTAACCGGC
CCTGCGCGCCCGTGCCCGTGCCTGCTTTTGACCGCCGGTCCGGTCTGTTC
CGGTCTTTTGGCCGATCCGACTGCCGTGAGTGTTCTAGTGATCGCACAGG
GGGTGCGGTGGATTTTTAGAGATCGATTAGTCGGTATTTAACGAAGAGGG
GTGTGCCGACACACCAAACGACACGTTTTCGGCCACCCTTTTCGGCACTG
ACGCTTTTCTTGTCGTGGAGCAATCGGGCTTTGAAAGGCGGTCCAGGGGG
TGTGTGCGATGATGACTCGAACACTTACGGTTAACGACCCCCCCCCCCCC
CCCCCGAAAGCAGGGGCCTCGCGTCTGAGCCTGGAGCAGCTGCTCTCCAC
GGGGGTGGTGGCGGCGGAGGGGCGGCGCCGCTGCGGAGCGGTGCTTGCGG
TCGGGTGGCCGGACGGTAGCCATCACCACAGCCGCGGTCGTCATCATCAT
CATGGTCATCGTAAGCGTCGGGGACATGACCACCACCAGGGTGAGCGAAA
AAAAGAGAAGGGGAGCGAAACAGAGACGGGGAACGAACGTTTTTTTGTTA
AAGAATACAACTAGTGTGTTCGAGCATGTAAGAATAGCATCATCAGTTTG
GAAGAATTTTTGGTTGGATACATCTGAAATTGTCGGATGGCGAATAAAAA
TAATAATAATAATACAACTAGTAATGTGACTAAACATGTTGGGTTGGGTT
GGGTTGGGTGTGCGGAGCACCGGGGTGGGTGGGGTGGGTCACATCAATCG
TCGGGGGCGGCGTGACCACCACCAGGGTGAGCGAAAAAGAGAAAGGAACG
AACACGAACGTTTTTTTTTCTGTTTTCTTCGTCTTGATATTTATTTCCAG
TGCTCGATGGGCTGGCTCTCCTTGTCACGAGGGCATGCATCTTGCCAGAG
TACTGAACCGTGGTCACCACTCACACAGAAGGGTTCCTTTCCCCGAGGCC
CCCACTTCCCCCTTCCATGATGCTGGCCTGAGTTTTTCTGTCGCGAGAAG
GGTTCAGCCGTCCTTTTCCCTCGTCGACGGTGAGGTCGAAGTATTGCTCT
TGTATAAACTAAAACCTAACCGGTATGTGTCTGCCGGCTCCTTCCCTTGA
CCACCACCACAACACGAAAACCATGGTGGGCCAGGGGTGTCCGTCAAGGG
GTACGCCACCCTCCCCCCAGCCGGCGACAACGGTGGCGGCGGCGGCGGCG
GCGAGATCGGCGCCGCTTGGACTCGGAGAGCCGAGACCGTCCGATTGGAG
AGCCAAGCGTCGTCGTCGGCCGTGCCGCGCTCTCCCTTCCGGCGGCGGTG
GTCCCTGGAGGCGTTCGGGGACCTGCTCGAGGACAAGGCGCTGTCGGCCT
GGGGCCCCCGCCGCGGGGCCGGGGGCCGCCTGGAGGCGTCGGCGCGGTAC
ACGTGGGAGCGGCTGCTGTACGACGGCCGGGTCCTGGGCGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8391:261..4204-

>mRNA_L-elsbetiae_contig8391.17393.1 ID=mRNA_L-elsbetiae_contig8391.17393.1|Name=mRNA_L-elsbetiae_contig8391.17393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1182bp|location=Sequence derived from alignment at L-elsbetiae_contig8391:261..4204- (Laminarionema elsbetiae ELsaHSoW15)
GAGGAGGTGTCGCGTCTACTTCGCAGCTGGAGGAGGTGTCGCGTCTACTT
CGCAGCTGGTTTGGCCTGGACGAGTTCCTCTGTCTGCACGAAGCGGCGAG
CCCGACATCGCCATCTTCTTCGCCATCGTCCCGTGGTTTGGCCTGGACGA
GTTCCTCTGTCTGCACGAAGCGGCGAGCCCGACATCGCCATCTTCTTCGC
CATCGTCCCGTGGGGCCTCGCGTCTGAGCCTGGAGCAGCTGCTCTCCACG
GGGGTGGTGGCGGCGGAGGGGCGGCGCCGCTGCGGAGCGGTGCTTGCGGT
CGGGTGGCCGGACGGTAGCCATCACCACAGCCGCGGTCGTCATCATCATC
ATGGTCATCGTAAGCGTCGGGGACATGACCACCACCAGGGGGCCTCGCGT
CTGAGCCTGGAGCAGCTGCTCTCCACGGGGGTGGTGGCGGCGGAGGGGCG
GCGCCGCTGCGGAGCGGTGCTTGCGGTCGGGTGGCCGGACGGTAGCCATC
ACCACAGCCGCGGTCGTCATCATCATCATGGTCATCGTAAGCGTCGGGGA
CATGACCACCACCAGGGGGTGTCCGTCAAGGGGTACGCCACCCTCCCCCC
AGCCGGCGACAACGGTGGCGGCGGCGGCGGCGGCGAGATCGGCGCCGCTT
GGACTCGGAGAGCCGAGACCGTCCGATTGGAGAGCCAAGCGTCGTCGTCG
GCCGTGCCGCGCTCTCCCTTCCGGCGGCGGTGGTCCCTGGAGGCGTTCGG
GGACCTGCTCGAGGACAAGGCGCTGTCGGCCTGGGGCCCCCGCCGCGGGG
CCGGGGGCCGCCTGGAGGCGTCGGCGCGGTACACGTGGGAGCGGCTGCTG
TACGACGGCCGGGTCCTGGGCGTGGGGTGTCCGTCAAGGGGTACGCCACC
CTCCCCCCAGCCGGCGACAACGGTGGCGGCGGCGGCGGCGGCGAGATCGG
CGCCGCTTGGACTCGGAGAGCCGAGACCGTCCGATTGGAGAGCCAAGCGT
CGTCGTCGGCCGTGCCGCGCTCTCCCTTCCGGCGGCGGTGGTCCCTGGAG
GCGTTCGGGGACCTGCTCGAGGACAAGGCGCTGTCGGCCTGGGGCCCCCG
CCGCGGGGCCGGGGGCCGCCTGGAGGCGTCGGCGCGGTACACGTGGGAGC
GGCTGCTGTACGACGGCCGGGTCCTGGGCGTG
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