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Homology
BLAST of mRNA_L-elsbetiae_contig8389.17388.1 vs. uniprot
Match: D8LRQ5_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ5_ECTSI) HSP 1 Score: 123 bits (308), Expect = 4.290e-27 Identity = 66/97 (68.04%), Postives = 74/97 (76.29%), Query Frame = 1
Query: 253 VSGREPYPGRSAPRTLQVPGVPPGQRSTAVMYC-EGAPAGTP-TLTPKSGWLPFAQEKGLVAPRTSHDDVVLDVKVTELPTKTLLSGRRDGAVKIWK 537
VSGREP+PGR +PRTLQVPG PG +ST V+Y E P TP +L ++G EKGLVAPR+SHDD VLDVKVTELPTK LLSG RDGAVKIWK
Sbjct: 1364 VSGREPFPGRPSPRTLQVPGPAPGGKSTVVLYFDEDPPPPTPASLASRTGSPAVTLEKGLVAPRSSHDDAVLDVKVTELPTKMLLSGSRDGAVKIWK 1460
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 123.6 |
| Seed ortholog evalue | 7.9e-26 |
| Seed eggNOG ortholog | 2880.D8LRQ5 |
| KEGG ko | ko:K08333 |
| KEGG Pathway | ko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005768,GO:0005770,GO:0005942,GO:0006464,GO:0006468,GO:0006605,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019898,GO:0030242,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034271,GO:0034272,GO:0034613,GO:0035032,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0061695,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071561,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098796,GO:0140096,GO:1901564,GO:1902494,GO:1990234 |
| EggNOG free text desc. | autophagy of peroxisome |
| EggNOG OGs | KOG1240@1,KOG1240@2759 |
| EC | 2.7.11.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko01001,ko04131 |
| Exons | 4 |
| Model size | 1053 |
| Cds size | 465 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816920.7080328-UTR-L-elsbetiae_contig8389:4822..5335 | 1622816920.7080328-UTR-L-elsbetiae_contig8389:4822..5335 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8389 4823..5335 - |
| 1691683913.4150324-UTR-L-elsbetiae_contig8389:4822..5335 | 1691683913.4150324-UTR-L-elsbetiae_contig8389:4822..5335 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8389 4823..5335 - |
| 1622816920.7646642-UTR-L-elsbetiae_contig8389:7349..7424 | 1622816920.7646642-UTR-L-elsbetiae_contig8389:7349..7424 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8389 7350..7424 - |
| 1691683913.4654608-UTR-L-elsbetiae_contig8389:7349..7424 | 1691683913.4654608-UTR-L-elsbetiae_contig8389:7349..7424 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8389 7350..7424 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816920.718525-CDS-L-elsbetiae_contig8389:5335..5461 | 1622816920.718525-CDS-L-elsbetiae_contig8389:5335..5461 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8389 5336..5461 - |
| 1691683913.4262886-CDS-L-elsbetiae_contig8389:5335..5461 | 1691683913.4262886-CDS-L-elsbetiae_contig8389:5335..5461 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8389 5336..5461 - |
| 1622816920.7293067-CDS-L-elsbetiae_contig8389:6227..6389 | 1622816920.7293067-CDS-L-elsbetiae_contig8389:6227..6389 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8389 6228..6389 - |
| 1691683913.436936-CDS-L-elsbetiae_contig8389:6227..6389 | 1691683913.436936-CDS-L-elsbetiae_contig8389:6227..6389 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8389 6228..6389 - |
| 1622816920.7407653-CDS-L-elsbetiae_contig8389:6655..6792 | 1622816920.7407653-CDS-L-elsbetiae_contig8389:6655..6792 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8389 6656..6792 - |
| 1691683913.4476867-CDS-L-elsbetiae_contig8389:6655..6792 | 1691683913.4476867-CDS-L-elsbetiae_contig8389:6655..6792 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8389 6656..6792 - |
| 1622816920.751652-CDS-L-elsbetiae_contig8389:7309..7349 | 1622816920.751652-CDS-L-elsbetiae_contig8389:7309..7349 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8389 7310..7349 - |
| 1691683913.4560533-CDS-L-elsbetiae_contig8389:7309..7349 | 1691683913.4560533-CDS-L-elsbetiae_contig8389:7309..7349 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8389 7310..7349 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8389.17388.1 >prot_L-elsbetiae_contig8389.17388.1 ID=prot_L-elsbetiae_contig8389.17388.1|Name=mRNA_L-elsbetiae_contig8389.17388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
MWSSVTGLSCGTSVLVVESSYPKEALPPLAGFDRERDGVVNIANNPGQVD
EHLLPTSSQVSGREPYPGRSAPRTLQVPGVPPGQRSTAVMYCEGAPAGTP
TLTPKSGWLPFAQEKGLVAPRTSHDDVVLDVKVTELPTKTLLSGRRDGAV
KIWK* back to topmRNA from alignment at L-elsbetiae_contig8389:4823..7424- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8389.17388.1 ID=mRNA_L-elsbetiae_contig8389.17388.1|Name=mRNA_L-elsbetiae_contig8389.17388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2602bp|location=Sequence derived from alignment at L-elsbetiae_contig8389:4823..7424- (Laminarionema elsbetiae ELsaHSoW15)
AGATTTAGATGAGCGGCGTTGCTTGCGGCGGAGGCGGTGAACGGCGGCAA
GGACGGAGAGGCCGCGTTGCAGAGGATGTGGTCAAGTGTTACGGGTTTAT
CATGTGGAACTTCAGGTAAAATTCAGTAGTCATTTCGCGAAGCAAGCGTC
TATCCACGAAAACTGCTTCTATATTTTAAAGAAAGTGCTGGTCCAGGTTG
AGGTTGGTCCGGGGGGAAGAGGGTGATGAAATTTCAACGATAATTAATGT
TTCAATGCAGCGCACGGCTCTCGTAGCTGCTCGACTAGCTTCTGTTTTTT
TCATCTGACACATGAAAAGGATGTACAACCGCTTTCCCACTATATTTTTC
GTAACCCGCTCTGGTGTCCTCGAATAACCTTTTTTGTGTCGCCAGCTCTT
TTGTATTTCCTCTCGAGACCCCCTACCTCTGCACGCCCCCTCGACCCTTC
ATGTCCGTGAAACCCCATTTTCCTCTCCCTTGCCTCTGGCGTTCTCGATG
TAGTCTCGCCCCTGAGCGAGTGTGTCTTACCATCTCTCTTCTAGCTACCT
TTGCCACACCAGTCCTTTGTTCTTCCACCAAGCCACCACCCACTCATCCC
CTGCTTGCGGCTTGTCTTGACCGCATCGTCAGTTCTAGTGGTTGAGAGTT
CTTATCCCAAGGAGGCGCTCCCACCGCTGGCCGGCTTCGATCGGGAGCGA
GACGGGGTGGTCAACATAGCAAACAACCCCGGACAGGTCGACGAGCACCT
CCTGCCCACCTCAAGTCAGGTGATTTCGAACCCGGTATCGCTGTTTTCCG
TCAGCGGAAACAAGCGGTGAGCATCACTGCCGCACTAGCTGATACTAATG
TATACCAGTCTTGCTGGCTTCAGCTACCCAACTAGGGGCCGTTCAACTCA
CATCAACCGATGGTGAACAAGCCCATTGGTCAACACCTCTTACAACCTAA
ATGGATTCGTTAGCGAAGCTTTCAGTGAGTAGCGTCATTTTCCTGTCTCG
TTTATGCTCGTCTTTTTGGTTTCGTGGCGTCATAGGTGTCAGGCCGGGAG
CCCTACCCCGGACGTTCCGCACCGAGGACGCTGCAGGTACCAGGTGTGCC
CCCCGGGCAGCGATCTACCGCGGTGATGTACTGCGAGGGTGCGCCCGCGG
GCACGCCAACCCTGACTCCCAAGAGCGGTTGGCTGCCGTTTGCTCAGGTA
GGTGATGTCGGTAGTTCAGTCGCTCAAACAGGTAGGTAGTTTACACAGTT
TTGTCTGTTGTGACAAGATAAATTCACCCACTTGCAGTGTTTGTGTTTTG
GCATATGCCGAACAAGGTAATTTTTGTTTTTCCTTTTTTACGGACATTTT
TGACGACCAGAGCAGACTGCTTTCTGCCTTCCTGGAGTGCCAGTCAAGAC
GGTATGCGGAAAGTTTCATTATCGCGGATATTATGTTGCCCAAGGTTGGC
CGCCACTACAAAAGTAGGGTTACTGGGAAACGTCTGGAGATGGGTACCAA
CATACTTGGACAGTGGCGTTTGGAATGGAAAATCCGTCAACGCACCTTGG
TATCGTCATAATCGCAGATTCATATTTTCTGACGGGCAGGCGGCGTAGGG
CGAACGTGTCTCGCTAAAACGAATTACGTATGTCAAAGGTGCTATGTACG
GTTGGCAGGCGGACGACCTCGTGTTCACCTTTCAGTTTTACGAATTTGTG
TTTTTCCTTGTGTTTTTTCCTTTTTCGGAAAACAAATGTTGAGTTCCATT
GCTGTTAATATTAAGGCGCTTTCTTGAAACGGCTGCATCTATTGTAGTTG
GTATGTTCCAGAGCAGTGACAGCCTTGCCAACTCCAGGTGTGCGACTTGT
CTAAATATTTATTGCTGTTGTTCTTCACGCCGCGTTCCTCGTCGTCACAC
ATGACCCGAACGACCCCGTCATGCCGCCGATTGCTGCCCCACCACCGCCA
CCGGTCGATGCAGGAGAAAGGTCTTGTCGCACCCCGTACGAGCCACGACG
ACGTCGTGTTGGACGTCAAGGTGACCGAGCTGCCGACGAAGACGTTGCTC
TCGGGCAGAAGGGATGGGGCCGTCAAAATTTGGAAATGAAAAACACGTAC
ATATTTGTGGTGTAGTGCATATATATGTAGGCATATCCTGCCAATGACGC
CAACTGCCATAGGACGTCGCGTCAGTCCCTGGCTGCTTGTAGATAGAAGT
CGTGTGCGTCGGTGTGTGGAGTTCCACACTTGCTGTTTTTGGGGAGTTGT
TGCTACCAGAGAGAGGGTGGAGACTGGCCATCTTCCCAAGCCATTCAAAT
GGCGATTTCGGCGACCCGGGTGCTGGAAAATCTTAATCTTTCCTGTTGTG
TTTCTGCCAAGGGCTGGAGAAGTTGGCACGATGACTAGCGAGTTGCACCG
GTATGATACCAAAGTATTTCGACGTGACGTGGTGTTTGTTTCGAGAGGCG
TTATTTGATCCAACCCATGTTGCCAAGCAAGGGTGGTGAAGATGTGGGGC
TTTGAGCTTCAAAGTGCACAAACATAAGTCACGTGGCTTTTTTGTCAGGC
TTCAAAGTCGCCTTTCTTCTGATTGAAGGAGGCATTTTGGTCAAAATTCG
AG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8389:4823..7424- >mRNA_L-elsbetiae_contig8389.17388.1 ID=mRNA_L-elsbetiae_contig8389.17388.1|Name=mRNA_L-elsbetiae_contig8389.17388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig8389:4823..7424- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGTCAAGTGTTACGGGTTTATCATGTGGAACTTCAGATGTGGTCAA
GTGTTACGGGTTTATCATGTGGAACTTCAGTTCTAGTGGTTGAGAGTTCT
TATCCCAAGGAGGCGCTCCCACCGCTGGCCGGCTTCGATCGGGAGCGAGA
CGGGGTGGTCAACATAGCAAACAACCCCGGACAGGTCGACGAGCACCTCC
TGCCCACCTCAAGTCAGTTCTAGTGGTTGAGAGTTCTTATCCCAAGGAGG
CGCTCCCACCGCTGGCCGGCTTCGATCGGGAGCGAGACGGGGTGGTCAAC
ATAGCAAACAACCCCGGACAGGTCGACGAGCACCTCCTGCCCACCTCAAG
TCAGGTGTCAGGCCGGGAGCCCTACCCCGGACGTTCCGCACCGAGGACGC
TGCAGGTACCAGGTGTGCCCCCCGGGCAGCGATCTACCGCGGTGATGTAC
TGCGAGGGTGCGCCCGCGGGCACGCCAACCCTGACTCCCAAGAGCGGTTG
GCTGCCGTTTGCTCAGGTGTCAGGCCGGGAGCCCTACCCCGGACGTTCCG
CACCGAGGACGCTGCAGGTACCAGGTGTGCCCCCCGGGCAGCGATCTACC
GCGGTGATGTACTGCGAGGGTGCGCCCGCGGGCACGCCAACCCTGACTCC
CAAGAGCGGTTGGCTGCCGTTTGCTCAGGAGAAAGGTCTTGTCGCACCCC
GTACGAGCCACGACGACGTCGTGTTGGACGTCAAGGTGACCGAGCTGCCG
ACGAAGACGTTGCTCTCGGGCAGAAGGGATGGGGCCGTCAAAATTTGGAA
ATGAGAGAAAGGTCTTGTCGCACCCCGTACGAGCCACGACGACGTCGTGT
TGGACGTCAAGGTGACCGAGCTGCCGACGAAGACGTTGCTCTCGGGCAGA
AGGGATGGGGCCGTCAAAATTTGGAAATGA back to top
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