mRNA_L-elsbetiae_contig8380.17383.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8380.17383.1
Unique NamemRNA_L-elsbetiae_contig8380.17383.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8380.17383.1 vs. uniprot
Match: A0A6H5J9Z0_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z0_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 3.760e-58
Identity = 104/145 (71.72%), Postives = 118/145 (81.38%), Query Frame = 3 
Query:  177 PCATPKGYRAIALDITPTTWQADLSKCNVCEERFTWLNHRHKCRSCMEAVCNSCSKDRKVLRARTAPKRVCDTCIKNCWTPRDSAAAPRKPMAADVAATKPAGKDGRRVSLTVSASDANACPIDATATAPLSPGTPATAGFFGPG 611
            PCATP+G+R I L ITP+TW+ DL+KCNVC +RFTWLNHRHKCR+C +AVCNSC+K RKV+RARTAPKRVCDTCI+NCWTPR  A    KP AA  +    A  D RRVSLTVS SD + CP+DATATAPLSPGTPA AGFFGPG
Sbjct:   31 PCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRKVIRARTAPKRVCDTCIQNCWTPRTPAVT--KPAAAAGSVVTKADGD-RRVSLTVSTSDGS-CPVDATATAPLSPGTPAAAGFFGPG 171
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BLAST of mRNA_L-elsbetiae_contig8380.17383.1 vs. uniprot
Match: D7G5L4_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L4_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.060e-25
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 3 
Query:  114 KHELTLDAPDVTVQRTSPCATPCATPKGYRAIALDITPTTWQADLSKCNVCEERFTWLNHRHKCRSCMEAVCNSCSKDRK 353
            K  LTLD  D   Q+ +    PCATP+G+R I L ITP+TW+ DL+KCNVC +RFTWLNHRHKCR+C +AVCNSC+K RK
Sbjct:    5 KLRLTLDEEDQAKQQQTK---PCATPRGFREIPLQITPSTWKTDLTKCNVCGDRFTWLNHRHKCRNCWQAVCNSCAKSRK 81
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BLAST of mRNA_L-elsbetiae_contig8380.17383.1 vs. uniprot
Match: D7G5L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L3_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.760e-6
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 3 
Query: 1266 EGGPMMVKIPEWSGVVFSGVAIGTGIATAVLLRSAFSLVRF 1388
            EGGPMMVK+  W+GVV   VAIGTG+A AV++RSA SLV F
Sbjct:  150 EGGPMMVKLTPWTGVVMGAVAIGTGVAIAVVVRSAVSLVFF 190
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BLAST of mRNA_L-elsbetiae_contig8380.17383.1 vs. uniprot
Match: A0A024TT53_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TT53_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.120e-5
Identity = 29/74 (39.19%), Postives = 47/74 (63.51%), Query Frame = 3 
Query:  195 GYRAIALDITPTTWQADLSKCNVCEERFTWLNHRHKCRSCMEAVCNSCSKDRKVLRARTAPK----RVCDTCIK 404
            G   I + +T +T++ D ++C+VC + F    H+H+CR+C  AVC SC+  +K + +R APK    RVCD C++
Sbjct:    5 GMNGIQIAMTNSTFE-DANECSVCLKGFYAFRHKHRCRTCGNAVCRSCASSQKRVTSR-APKNDSSRVCDKCVR 76
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8380.17383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J9Z0_9PHAE3.760e-5871.72FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G5L4_ECTSI1.060e-2562.50FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G5L3_ECTSI1.760e-668.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024TT53_9STRA2.120e-539.19Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8380contigL-elsbetiae_contig8380:942..3543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog2903.EOD19796
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionFYVE zinc finger
Ec32 orthologEc-16_002350.1
Exons4
Model size1394
Cds size1302
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8380.17383.1prot_L-elsbetiae_contig8380.17383.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8380 942..3451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816920.331197-CDS-L-elsbetiae_contig8380:941..11021622816920.331197-CDS-L-elsbetiae_contig8380:941..1102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8380 942..1102 -
1691683913.0906038-CDS-L-elsbetiae_contig8380:941..11021691683913.0906038-CDS-L-elsbetiae_contig8380:941..1102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8380 942..1102 -
1622816920.3424683-CDS-L-elsbetiae_contig8380:1225..21051622816920.3424683-CDS-L-elsbetiae_contig8380:1225..2105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8380 1226..2105 -
1691683913.1089451-CDS-L-elsbetiae_contig8380:1225..21051691683913.1089451-CDS-L-elsbetiae_contig8380:1225..2105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8380 1226..2105 -
1622816920.3539593-CDS-L-elsbetiae_contig8380:2785..28711622816920.3539593-CDS-L-elsbetiae_contig8380:2785..2871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8380 2786..2871 -
1691683913.1235986-CDS-L-elsbetiae_contig8380:2785..28711691683913.1235986-CDS-L-elsbetiae_contig8380:2785..2871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8380 2786..2871 -
1622816920.36505-CDS-L-elsbetiae_contig8380:3276..34511622816920.36505-CDS-L-elsbetiae_contig8380:3276..3451Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8380 3277..3451 -
1691683913.1330824-CDS-L-elsbetiae_contig8380:3276..34511691683913.1330824-CDS-L-elsbetiae_contig8380:3276..3451Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8380 3277..3451 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816920.3760295-UTR-L-elsbetiae_contig8380:3451..35431622816920.3760295-UTR-L-elsbetiae_contig8380:3451..3543Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8380 3452..3543 -
1691683913.145783-UTR-L-elsbetiae_contig8380:3451..35431691683913.145783-UTR-L-elsbetiae_contig8380:3451..3543Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8380 3452..3543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8380.17383.1

>prot_L-elsbetiae_contig8380.17383.1 ID=prot_L-elsbetiae_contig8380.17383.1|Name=mRNA_L-elsbetiae_contig8380.17383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=434bp
MSFSAAKKHELTLDAPDVTVQRTSPCATPCATPKGYRAIALDITPTTWQA
DLSKCNVCEERFTWLNHRHKCRSCMEAVCNSCSKDRKVLRARTAPKRVCD
TCIKNCWTPRDSAAAPRKPMAADVAATKPAGKDGRRVSLTVSASDANACP
IDATATAPLSPGTPATAGFFGPGCVTPSATTAALAPPVQGAANKNTTTAT
GNVDTRPPSSSSCRRHRRQVSVAMPPVSLLTSPAASASSMMMPPPPTPAA
AAAAAADGEKKVEETDDMPPSAAGTPSSLFAPPPPSFFGGRRVGGGNRGS
RRESSGGRLESGVWGDGLALGGGGDVDKAVAELQQLQEEVVAELQKLDEE
IEEAGGEGQQAEAAVSAPAAAPAALPEGPAEEEEEEEGDYGEGGPMMVKI
PEWSGVVFSGVAIGTGIATAVLLRSAFSLVRFN*
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mRNA from alignment at L-elsbetiae_contig8380:942..3543-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8380.17383.1 ID=mRNA_L-elsbetiae_contig8380.17383.1|Name=mRNA_L-elsbetiae_contig8380.17383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2602bp|location=Sequence derived from alignment at L-elsbetiae_contig8380:942..3543- (Laminarionema elsbetiae ELsaHSoW15)
CTCTCACGCCACCCACCTCGCGGTAATTCTCTCCAGCTCAGACACAAGCA
CCGAACGAAGCTTGAGGAGCACTTGCTTCGGTGTCCGGAAACATGAGCTT
CTCCGCGGCCAAGAAACACGAGCTGACTCTCGATGCCCCGGATGTGACGG
TCCAGAGGACTTCTCCCTGCGCTACTCCTTGCGCGACACCGAAGGGATAC
CGAGCAATAGCGTTGGATATCACACCGACCACTTGGCAGGCGGATCTCTC
CAAGTGCAATGTGTGCGGTGAGGCATTATGCGTGTTGTGTACTGACTTCA
GCTCTTTTTTCCAGCAGTTTTCGGAACATCCCCTCGGGGAAAAATTGTTT
TGGCTCGAAGCGCGCTCTCGACCCTCGGGTCCCTTGACTGACTGCACTAC
TCGAACCAATCCCCAGCTACTAAGCGTGAGGCGCAGGGCTCATAATAGTT
TTCCTAGGTTCGCCACGAGTTGTTCGGCATCGGAAGCAAGGCAAATGTGT
TTTTGCAATCTGTCGGCCAGCAAAATCCTAACGGCTTTTCCAACTTGTTC
TTGACTCCTGTCCGAGCAAAAATACCCTAACGGCTTTTCCCTCCTGCGCT
TGTCTCCTTCCTTCCGCTTTCCTCGTCGACACACGCTTATCTCCTTCCGC
CTTCCCTCGTCGACACACGCAGAGGAGCGCTTCACGTGGCTGAACCACCG
CCACAAGTGCCGCAGTTGCATGGAAGCCGTGTGCAACTCTTGCTCCAAAG
ATAGAAAGGTAAGCTATGTACATAAGATACAATCTTGATATCCAGTCTAG
ACAGACTACACTGTATGCGTGGTCTGCTGTTGTAAGTGGATGCGCTGCGG
GTTCTCGCTGTCAGTCCCATTTTTCCTTTTTCGTCTGCAGCCACCTACCT
GTACATATCTATAACCTACGTGCAACGACTAGGATCTTGCGGGAGCGTGT
GACCAACTCGTATCCAGCTTGTTGAGCTGGGTGCTCGAATAAAAACAAAG
AGCTGCGCTTGCATCAATCAGCACTCGCCCCGGAGTTTTGTTGGCACACG
CTTCAACCACCCTGAAACTGTTGGATGGAAACAAAGACAGGCTGTAATGG
CGAGCCCAAAAAAGTATTTCGACGTGATGGTTGGCCCAATTTTCATGGGT
GTTACGGGTGACATGGAGAGGAGATATTTCGAGGGCTATATAATGCACCT
TGCCGCACAGAAAATATTTGCCGTTTTGAGATTGCGTGCAGACCGCAAGC
AGGCAGGCTCTCTTGCCCCTAAACACCCAACTGTATGCATGCACATTGGC
ATCCACACACAAAACGGGCCTGTATAGATACACATGCCATGTTCGTTTTA
GGTACTTCCGAGGTATGTTTGTGTGTATGCATGTTGCATCTTTCGTTTTT
CACCGACCCGACCTCCCTGCCCGCGGAAACAAAAACAGGTCCTACGCGCC
CGCACTGCACCGAAGCGGGTCTGCGATACGTGCATCAAGAACTGCTGGAC
GCCCAGGGACTCAGCCGCCGCCCCCAGGAAACCCATGGCTGCCGATGTCG
CCGCCACCAAGCCGGCTGGCAAAGACGGCCGCCGCGTTTCCCTGACCGTG
TCCGCGTCCGACGCCAACGCCTGCCCGATCGACGCCACCGCGACGGCGCC
GCTCTCCCCGGGCACCCCTGCCACCGCGGGCTTCTTCGGCCCCGGCTGCG
TCACCCCCTCAGCGACGACAGCGGCACTAGCACCCCCCGTGCAGGGAGCA
GCCAACAAGAACACCACCACCGCCACCGGCAACGTCGACACCCGTCCCCC
GTCGTCCTCCTCGTGCCGCCGCCACCGCCGCCAGGTCAGCGTGGCGATGC
CACCCGTCTCGCTGCTGACGTCGCCGGCGGCGTCCGCGTCGTCGATGATG
ATGCCGCCGCCCCCAACGCCGGCAGCAGCAGCAGCAGCAGCAGCAGATGG
CGAAAAAAAGGTCGAAGAAACCGATGACATGCCGCCGTCTGCCGCCGGGA
CTCCTTCGTCGTTGTTCGCGCCCCCGCCCCCGTCCTTCTTCGGCGGCCGG
CGGGTTGGTGGTGGTAACCGCGGTAGCCGGCGAGAGAGCAGCGGCGGCCG
CCTCGAGAGCGGGGTGTGGGGCGATGGGCTCGCGCTTGGGGGCGGGGGCG
ATGTTGACAAGGCGGTGGCGGAGCTGCAGCAGCTCCAGGAGGAGGTGGTG
GCGGAGCTGCAGAAGCTGGACGAGGAGATCGAGGAAGCGGGAGGGGAGGG
GCAACAAGCGGAGGCCGCCGTCTCTGCGCCCGCGGCCGCACCGGCCGCCT
TGCCGGAGGGGCCAGCCGGTGCTGCTCCTTCTGCTGCTGCTGCCCCTGCT
GCTACTGTCAATGCTGGTGCCGAGGAGCCAGCCGGTGCTGCTCCTGCTGC
TGTCAAAGCTGATGCCGATTCTTTTATTGCTGCTGAACAAGAGGAGGAGG
AGGAGGAGGAGGGTGACTATGGCGAGGGAGGTCCGATGATGGTGAAGATC
CCGGAATGGTCGGGGGTGGTATTCAGCGGCGTTGCGATCGGAACGGGTAT
CGCTACCGCGGTACTTTTGCGGTCTGCGTTCTCGCTGGTGCGTTTTAACT
GA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8380:942..3543-

>mRNA_L-elsbetiae_contig8380.17383.1 ID=mRNA_L-elsbetiae_contig8380.17383.1|Name=mRNA_L-elsbetiae_contig8380.17383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2604bp|location=Sequence derived from alignment at L-elsbetiae_contig8380:942..3543- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCTTCTCCGCGGCCAAGAAACACGAGCTGACTCTCGATGCCCCGGA
TGTGACGGTCCAGAGGACTTCTCCCTGCGCTACTCCTTGCGCGACACCGA
AGGGATACCGAGCAATAGCGTTGGATATCACACCGACCACTTGGCAGGCG
GATCTCTCCAAGTGCAATGTGTGCGATGAGCTTCTCCGCGGCCAAGAAAC
ACGAGCTGACTCTCGATGCCCCGGATGTGACGGTCCAGAGGACTTCTCCC
TGCGCTACTCCTTGCGCGACACCGAAGGGATACCGAGCAATAGCGTTGGA
TATCACACCGACCACTTGGCAGGCGGATCTCTCCAAGTGCAATGTGTGCG
AGGAGCGCTTCACGTGGCTGAACCACCGCCACAAGTGCCGCAGTTGCATG
GAAGCCGTGTGCAACTCTTGCTCCAAAGATAGAAAGAGGAGCGCTTCACG
TGGCTGAACCACCGCCACAAGTGCCGCAGTTGCATGGAAGCCGTGTGCAA
CTCTTGCTCCAAAGATAGAAAGGTCCTACGCGCCCGCACTGCACCGAAGC
GGGTCTGCGATACGTGCATCAAGAACTGCTGGACGCCCAGGGACTCAGCC
GCCGCCCCCAGGAAACCCATGGCTGCCGATGTCGCCGCCACCAAGCCGGC
TGGCAAAGACGGCCGCCGCGTTTCCCTGACCGTGTCCGCGTCCGACGCCA
ACGCCTGCCCGATCGACGCCACCGCGACGGCGCCGCTCTCCCCGGGCACC
CCTGCCACCGCGGGCTTCTTCGGCCCCGGCTGCGTCACCCCCTCAGCGAC
GACAGCGGCACTAGCACCCCCCGTGCAGGGAGCAGCCAACAAGAACACCA
CCACCGCCACCGGCAACGTCGACACCCGTCCCCCGTCGTCCTCCTCGTGC
CGCCGCCACCGCCGCCAGGTCAGCGTGGCGATGCCACCCGTCTCGCTGCT
GACGTCGCCGGCGGCGTCCGCGTCGTCGATGATGATGCCGCCGCCCCCAA
CGCCGGCAGCAGCAGCAGCAGCAGCAGCAGATGGCGAAAAAAAGGTCGAA
GAAACCGATGACATGCCGCCGTCTGCCGCCGGGACTCCTTCGTCGTTGTT
CGCGCCCCCGCCCCCGTCCTTCTTCGGCGGCCGGCGGGTTGGTGGTGGTA
ACCGCGGTAGCCGGCGAGAGAGCAGCGGCGGCCGCCTCGAGAGCGGGGTG
TGGGGCGATGGGCTCGCGCTTGGGGGCGGGGGCGATGTTGACAAGGCGGT
GGCGGAGCTGCAGCAGCTCCAGGAGGAGGTGGTGGCGGAGCTGCAGAAGC
TGGACGAGGAGATCGAGGAAGCGGGAGGGGAGGGGCAACAAGCGGAGGCC
GCCGTCTCTGCGCCCGCGGCCGCACCGGCCGCCTTGCCGGAGGGGCCAGC
CGGTCCTACGCGCCCGCACTGCACCGAAGCGGGTCTGCGATACGTGCATC
AAGAACTGCTGGACGCCCAGGGACTCAGCCGCCGCCCCCAGGAAACCCAT
GGCTGCCGATGTCGCCGCCACCAAGCCGGCTGGCAAAGACGGCCGCCGCG
TTTCCCTGACCGTGTCCGCGTCCGACGCCAACGCCTGCCCGATCGACGCC
ACCGCGACGGCGCCGCTCTCCCCGGGCACCCCTGCCACCGCGGGCTTCTT
CGGCCCCGGCTGCGTCACCCCCTCAGCGACGACAGCGGCACTAGCACCCC
CCGTGCAGGGAGCAGCCAACAAGAACACCACCACCGCCACCGGCAACGTC
GACACCCGTCCCCCGTCGTCCTCCTCGTGCCGCCGCCACCGCCGCCAGGT
CAGCGTGGCGATGCCACCCGTCTCGCTGCTGACGTCGCCGGCGGCGTCCG
CGTCGTCGATGATGATGCCGCCGCCCCCAACGCCGGCAGCAGCAGCAGCA
GCAGCAGCAGATGGCGAAAAAAAGGTCGAAGAAACCGATGACATGCCGCC
GTCTGCCGCCGGGACTCCTTCGTCGTTGTTCGCGCCCCCGCCCCCGTCCT
TCTTCGGCGGCCGGCGGGTTGGTGGTGGTAACCGCGGTAGCCGGCGAGAG
AGCAGCGGCGGCCGCCTCGAGAGCGGGGTGTGGGGCGATGGGCTCGCGCT
TGGGGGCGGGGGCGATGTTGACAAGGCGGTGGCGGAGCTGCAGCAGCTCC
AGGAGGAGGTGGTGGCGGAGCTGCAGAAGCTGGACGAGGAGATCGAGGAA
GCGGGAGGGGAGGGGCAACAAGCGGAGGCCGCCGTCTCTGCGCCCGCGGC
CGCACCGGCCGCCTTGCCGGAGGGGCCAGCCGAGGAGGAGGAGGAGGAGG
AGGGTGACTATGGCGAGGGAGGTCCGATGATGGTGAAGATCCCGGAATGG
TCGGGGGTGGTATTCAGCGGCGTTGCGATCGGAACGGGTATCGCTACCGC
GGTACTTTTGCGGTCTGCGTTCTCGCTGGTGCGTTTTAACTGAAGGAGGA
GGAGGAGGAGGAGGGTGACTATGGCGAGGGAGGTCCGATGATGGTGAAGA
TCCCGGAATGGTCGGGGGTGGTATTCAGCGGCGTTGCGATCGGAACGGGT
ATCGCTACCGCGGTACTTTTGCGGTCTGCGTTCTCGCTGGTGCGTTTTAA
CTGA
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