mRNA_L-elsbetiae_contig8372.17372.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8372.17372.1
Unique NamemRNA_L-elsbetiae_contig8372.17372.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8372.17372.1 vs. uniprot
Match: D8LJZ7_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJZ7_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 2.500e-77
Identity = 177/267 (66.29%), Postives = 186/267 (69.66%), Query Frame = 1 
Query:    1 VVIPDTIRHLCIPLTGGDFFSRLEGLAAAVRELQPRRPLIFVPPQERVTAVVAHLRRAGGSVGARAVALHEAMGFVSDXXXXXXXXXXVHDRHASEAIQRHDTL-AGQFKGAGVPYSAVAAXXXXXXXXXXXXXXXXXXXXXXTGGEFGPPAGVSTXXXXXXXXXXXXXXXLLXXXXXXXGEAGDVLVTGEDSARGLHFDDVDFVFIMQKPRSPDEYVHLAGRTGXXXXXXXXXXXXEFNEFRKLQGWSSSLKINFEPLDILNVVKR 798
            VVIPDTIRH C+PL  GDFFSRLEGL AAVRELQPRRPLIFVPPQERVTAVVAHLRRAGG+VGARAVALHEAMGFVSD          V  RH SEAI++HD L AGQ    G        XXXXXXXXXXXXX          GG        S                +         E GDVLVTGE SARGLHFDDVDFVF+MQKP+SPDEYVHLAGRTGXXXXXXXXXXXX    FRKLQGWS SLK+NFEPLDILNV+KR
Sbjct:  574 VVIPDTIRHYCVPLGDGDFFSRLEGLTAAVRELQPRRPLIFVPPQERVTAVVAHLRRAGGAVGARAVALHEAMGFVSDEDFGV-----VRGRHFSEAIEQHDRLVAGQSLAGGGEGGGREPXXXXXXXXXXXXXADESGVVTGAGG--------SGSSSGHLLAGGVGPGGMRLRNGDGDAEVGDVLVTGEGSARGLHFDDVDFVFLMQKPKSPDEYVHLAGRTGXXXXXXXXXXXXXXXXFRKLQGWSYSLKVNFEPLDILNVLKR 827
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BLAST of mRNA_L-elsbetiae_contig8372.17372.1 vs. uniprot
Match: A0A7S2Y0L3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0L3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.980e-14
Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:  541 EAGDVLVTGEDSARGLHFDDVDFVFIMQKPRSPDEYVHLAGRTGXXXXXXXXXXXXEFNEFRKLQGWSSSLKINFEPLDI 780
            E   +LV  ED+ARGLHF++VD+VF++ KP++PDEY+HLAGRTGXXXXXXX      F E +K++ W   L +  E L++
Sbjct:  614 ERPPLLVASEDTARGLHFNEVDYVFLLAKPKTPDEYLHLAGRTGXXXXXXXVVTVISFREVKKMKAWKKILGVELEELEL 693
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BLAST of mRNA_L-elsbetiae_contig8372.17372.1 vs. uniprot
Match: A0A7S2HEN2_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HEN2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.210e-13
Identity = 34/77 (44.16%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:  547 GDVLVTGEDSARGLHFDDVDFVFIMQKPRSPDEYVHLAGRTGXXXXXXXXXXXXEFNEFRKLQGWSSSLKINFEPLD 777
            G VLV  EDS RGLH D +D+V ++ +PR PDEY H+AGRTG             F +   L  W   L + F PLD
Sbjct:   52 GYVLVCNEDSVRGLHLDGLDYVIVVGRPRGPDEYTHIAGRTGRAGKRGTVVNVVSFEQAAALTSWEKMLDVEFIPLD 128
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BLAST of mRNA_L-elsbetiae_contig8372.17372.1 vs. uniprot
Match: A0A7S0AXH7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AXH7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.560e-13
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:  541 EAGDVLVTGEDSARGLHFDDVDFVFIMQKPRSPDEYVHLAGRTGXXXXXXXXXXXXEFNEFRKLQGWSSSLKINFEPLD 777
            + G + VTGEDS RGLH D++D V  + +PR PDEY H+AGRTG             + +   L  W S L ++F PL+
Sbjct:   16 DEGYLYVTGEDSVRGLHLDNLDTVICVGRPRGPDEYTHIAGRTGRAGNKGTVINVVGYEQANALTSWESMLDVSFYPLE 94
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BLAST of mRNA_L-elsbetiae_contig8372.17372.1 vs. uniprot
Match: A0A7S4N6Z0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N6Z0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.740e-12
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:  538 GEAGDVLVTGEDSARGLHFDDVDFVFIMQKPRSPDEYVHLAGRTGXXXXXXXXXXXXEFNEFRKLQGWSSSLKINFEPLD 777
            GE G +LVTGED+ RGLH D +D V ++ +P  PDEY H+AGRTG             + +   L  W   L ++F P+D
Sbjct:   90 GEDGYLLVTGEDTVRGLHLDGLDSVIVVGRPHGPDEYTHIAGRTGRAGRGGDVINVVSYEQAAALASWEKMLGVDFIPMD 169
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BLAST of mRNA_L-elsbetiae_contig8372.17372.1 vs. uniprot
Match: A0A7S2DFC3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DFC3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.470e-11
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  553 VLVTGEDSARGLHFDDVDFVFIMQKPRSPDEYVHLAGRTGXXXXXXXXXXXXEFNEFRKLQGWSSSL 753
            +LV  EDSARGLH D +D VF++ +P+  DEY+HLAGRTG             F E   LQGW + +
Sbjct:   58 LLVANEDSARGLHLDAIDVVFVLSRPKGADEYLHLAGRTGRCGLKGKVVSFLSFREANALQGWGTQI 124
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BLAST of mRNA_L-elsbetiae_contig8372.17372.1 vs. uniprot
Match: A0A7S2EDS3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EDS3_TRICV)

HSP 1 Score: 70.1 bits (170), Expect = 1.240e-10
Identity = 30/79 (37.97%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:  541 EAGDVLVTGEDSARGLHFDDVDFVFIMQKPRSPDEYVHLAGRTGXXXXXXXXXXXXEFNEFRKLQGWSSSLKINFEPLD 777
            + G + VTGED+ RGLH D +D V ++ +P  PDEY H+AGRTG             + +   +  W   L ++F PLD
Sbjct:  151 DGGYLFVTGEDTVRGLHLDGLDTVVVVGRPHGPDEYTHIAGRTGRAGRKGDVINVVSYEQASAMSSWERMLDVDFIPLD 229
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BLAST of mRNA_L-elsbetiae_contig8372.17372.1 vs. uniprot
Match: A0A0G4EJG7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJG7_VITBC)

HSP 1 Score: 70.9 bits (172), Expect = 2.830e-10
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:  553 VLVTGEDSARGLHFDDVDFVFIMQKPRSPDEYVHLAGRTGXXXXXXXXXXXXEFNEFRKLQGWSSSLKINFEPLDI 780
            +LV   D ARGLHF+ VD VF++ +PR+PDEY HLAGRTG            +  E R L  W   L I+  PL +
Sbjct:  381 LLVASMDGARGLHFNQVDMVFVLGRPRTPDEYQHLAGRTGRQGAGGTAVIIGDSFEVRSLLAWRKMLGIDIRPLRV 456
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BLAST of mRNA_L-elsbetiae_contig8372.17372.1 vs. uniprot
Match: K0RKD7_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RKD7_THAOC)

HSP 1 Score: 69.7 bits (169), Expect = 8.210e-10
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  547 GDVLVTGEDSARGLHFDDVDFVFIMQKPRSPDEYVHLAGRTGXXXXXXXXXXXXEFNEFRKLQGWSSSLKINFEPLD 777
            G +LVT ED+ RGLH D +D V ++ +P SPDEY H+AGRTG             F +   L  W+  L ++F P+D
Sbjct:  712 GYLLVTHEDNVRGLHLDRLDAVVVVGRPGSPDEYTHIAGRTGRAGRKGSVLNIVSFEQAAALASWTKMLGVDFMPID 788
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BLAST of mRNA_L-elsbetiae_contig8372.17372.1 vs. uniprot
Match: A0A1Z5JEC7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEC7_FISSO)

HSP 1 Score: 69.3 bits (168), Expect = 1.020e-9
Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:  544 AGDVLVTGEDSARGLHFDDVDFVFIMQKPRSPDEYVHLAGRTGXXXXXXXXXXXXEFNEFRKLQGWSSSLKINFEPL 774
            +G VLVTGED+ RGLH D +D+V ++ +P  PDEY H+AGRTG              ++   L  WS  L + F  +
Sbjct:  542 SGYVLVTGEDTVRGLHLDGLDYVLVLGRPNGPDEYTHIAGRTGRAGTPGKVFSIMSESDSASLVSWSRMLGVEFHTI 618
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8372.17372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJZ7_ECTSI2.500e-7766.29DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S2Y0L3_9STRA9.980e-1452.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2HEN2_9STRA5.210e-1344.16Hypothetical protein n=2 Tax=Helicotheca tamesis T... [more]
A0A7S0AXH7_9STRA8.560e-1341.77Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S4N6Z0_9STRA1.740e-1241.25Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2DFC3_9STRA1.470e-1146.27Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2EDS3_TRICV1.240e-1037.97Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A0G4EJG7_VITBC2.830e-1044.74Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
K0RKD7_THAOC8.210e-1041.56Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
A0A1Z5JEC7_FISSO1.020e-940.26Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8372contigL-elsbetiae_contig8372:1248..2048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score263.8
Seed ortholog evalue8.4e-68
Seed eggNOG ortholog2880.D8LJZ7
KEGG koko:K09250,ko:K11594,ko:K20096
KEGG Pathwayko04622,ko05161,ko05203,map04622,map05161,map05203
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0335@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03009,ko03019,ko03036,ko03041
Exons1
Model size801
Cds size801
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816919.250464-CDS-L-elsbetiae_contig8372:1247..20481622816919.250464-CDS-L-elsbetiae_contig8372:1247..2048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8372 1248..2048 +
1691683912.2971437-CDS-L-elsbetiae_contig8372:1247..20481691683912.2971437-CDS-L-elsbetiae_contig8372:1247..2048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8372 1248..2048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8372.17372.1prot_L-elsbetiae_contig8372.17372.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8372 1248..2048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8372.17372.1

>prot_L-elsbetiae_contig8372.17372.1 ID=prot_L-elsbetiae_contig8372.17372.1|Name=mRNA_L-elsbetiae_contig8372.17372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=267bp
VVIPDTIRHLCIPLTGGDFFSRLEGLAAAVRELQPRRPLIFVPPQERVTA
VVAHLRRAGGSVGARAVALHEAMGFVSDDDAGGGGGGGVHDRHASEAIQR
HDTLAGQFKGAGVPYSAVAAAVAEAEAEAEAGRGGGGESDGDTGGEFGPP
AGVSTSGSGSGSGSGSGSGSLLAGLGAGAGEAGDVLVTGEDSARGLHFDD
VDFVFIMQKPRSPDEYVHLAGRTGRQGKTGTVVSLVEFNEFRKLQGWSSS
LKINFEPLDILNVVKR*
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mRNA from alignment at L-elsbetiae_contig8372:1248..2048+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8372.17372.1 ID=mRNA_L-elsbetiae_contig8372.17372.1|Name=mRNA_L-elsbetiae_contig8372.17372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=801bp|location=Sequence derived from alignment at L-elsbetiae_contig8372:1248..2048+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGTCATCCCGGACACCATCCGCCACCTGTGCATCCCCCTGACCGGTGG
CGATTTCTTCTCGCGGCTGGAGGGGCTGGCGGCGGCGGTGCGCGAGCTGC
AGCCACGGCGGCCGCTCATCTTCGTGCCCCCGCAGGAGCGGGTCACCGCC
GTGGTGGCGCACCTGCGGCGCGCCGGCGGCAGCGTGGGCGCGAGGGCCGT
GGCCCTGCACGAGGCGATGGGCTTCGTCTCGGACGACGACGCCGGCGGCG
GCGGCGGCGGCGGCGTCCACGACCGCCACGCGTCCGAGGCCATCCAGCGG
CACGACACGCTCGCCGGGCAGTTCAAGGGAGCAGGCGTCCCCTACTCGGC
GGTGGCGGCGGCGGTGGCGGAGGCGGAGGCGGAGGCGGAGGCAGGCCGCG
GTGGCGGTGGAGAGTCCGACGGCGACACCGGTGGCGAGTTTGGTCCACCC
GCCGGGGTTAGCACCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGG
CAGTGGCAGCCTTCTCGCGGGGCTGGGAGCAGGGGCTGGCGAGGCCGGGG
ATGTGCTCGTCACGGGTGAAGACTCGGCGAGAGGCCTCCACTTCGACGAC
GTGGACTTCGTGTTCATCATGCAGAAGCCCAGGAGCCCCGACGAGTACGT
GCACCTGGCCGGACGCACCGGGCGGCAGGGGAAGACCGGCACCGTCGTGT
CTCTCGTCGAGTTCAACGAGTTCCGGAAGCTGCAGGGGTGGTCGAGCTCG
CTCAAGATCAACTTCGAGCCGCTGGACATCCTGAACGTCGTGAAGCGATG
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8372:1248..2048+

>mRNA_L-elsbetiae_contig8372.17372.1 ID=mRNA_L-elsbetiae_contig8372.17372.1|Name=mRNA_L-elsbetiae_contig8372.17372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1602bp|location=Sequence derived from alignment at L-elsbetiae_contig8372:1248..2048+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGTCATCCCGGACACCATCCGCCACCTGTGCATCCCCCTGACCGGTGG
CGATTTCTTCTCGCGGCTGGAGGGGCTGGCGGCGGCGGTGCGCGAGCTGC
AGCCACGGCGGCCGCTCATCTTCGTGCCCCCGCAGGAGCGGGTCACCGCC
GTGGTGGCGCACCTGCGGCGCGCCGGCGGCAGCGTGGGCGCGAGGGCCGT
GGCCCTGCACGAGGCGATGGGCTTCGTCTCGGACGACGACGCCGGCGGCG
GCGGCGGCGGCGGCGTCCACGACCGCCACGCGTCCGAGGCCATCCAGCGG
CACGACACGCTCGCCGGGCAGTTCAAGGGAGCAGGCGTCCCCTACTCGGC
GGTGGCGGCGGCGGTGGCGGAGGCGGAGGCGGAGGCGGAGGCAGGCCGCG
GTGGCGGTGGAGAGTCCGACGGCGACACCGGTGGCGAGTTTGGTCCACCC
GCCGGGGTTAGCACCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGG
CAGTGGCAGCCTTCTCGCGGGGCTGGGAGCAGGGGCTGGCGAGGCCGGGG
ATGTGCTCGTCACGGGTGAAGACTCGGCGAGAGGCCTCCACTTCGACGAC
GTGGACTTCGTGTTCATCATGCAGAAGCCCAGGAGCCCCGACGAGTACGT
GCACCTGGCCGGACGCACCGGGCGGCAGGGGAAGACCGGCACCGTCGTGT
CTCTCGTCGAGTTCAACGAGTTCCGGAAGCTGCAGGGGTGGTCGAGCTCG
CTCAAGATCAACTTCGAGCCGCTGGACATCCTGAACGTCGTGAAGCGATG
AGTGGTCATCCCGGACACCATCCGCCACCTGTGCATCCCCCTGACCGGTG
GCGATTTCTTCTCGCGGCTGGAGGGGCTGGCGGCGGCGGTGCGCGAGCTG
CAGCCACGGCGGCCGCTCATCTTCGTGCCCCCGCAGGAGCGGGTCACCGC
CGTGGTGGCGCACCTGCGGCGCGCCGGCGGCAGCGTGGGCGCGAGGGCCG
TGGCCCTGCACGAGGCGATGGGCTTCGTCTCGGACGACGACGCCGGCGGC
GGCGGCGGCGGCGGCGTCCACGACCGCCACGCGTCCGAGGCCATCCAGCG
GCACGACACGCTCGCCGGGCAGTTCAAGGGAGCAGGCGTCCCCTACTCGG
CGGTGGCGGCGGCGGTGGCGGAGGCGGAGGCGGAGGCGGAGGCAGGCCGC
GGTGGCGGTGGAGAGTCCGACGGCGACACCGGTGGCGAGTTTGGTCCACC
CGCCGGGGTTAGCACCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCG
GCAGTGGCAGCCTTCTCGCGGGGCTGGGAGCAGGGGCTGGCGAGGCCGGG
GATGTGCTCGTCACGGGTGAAGACTCGGCGAGAGGCCTCCACTTCGACGA
CGTGGACTTCGTGTTCATCATGCAGAAGCCCAGGAGCCCCGACGAGTACG
TGCACCTGGCCGGACGCACCGGGCGGCAGGGGAAGACCGGCACCGTCGTG
TCTCTCGTCGAGTTCAACGAGTTCCGGAAGCTGCAGGGGTGGTCGAGCTC
GCTCAAGATCAACTTCGAGCCGCTGGACATCCTGAACGTCGTGAAGCGAT
GA
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