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Homology
BLAST of mRNA_L-elsbetiae_contig8366.17366.1 vs. uniprot
Match: D7FJQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ8_ECTSI) HSP 1 Score: 118 bits (296), Expect = 5.040e-30 Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 1
Query: 1 KLRNSKRQRSRSNRRERILKKGQPPAVGDVVQGYVRKVERSMLLVDVMFPELSVLRANKIRTSGEGGKFVDLSEKTRPGDVITVRIE 261
KLR+SKRQRSR++RRER+ KKG+ AVGD+V+GYVR+V SMLLVDVMF +LSVLRA+ IR S EG KFV+LS KT+PGD+ITVRIE
Sbjct: 223 KLRDSKRQRSRNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNSEEGQKFVNLSNKTKPGDLITVRIE 309
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | OB-fold nucleic-acid-binding protein |
| Ec32 ortholog description | Nucleic acid-binding, OB-fold |
| Ec32 ortholog | Ec-06_010560.1 |
| Exons | 2 |
| Model size | 263 |
| Cds size | 261 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816918.6286926-CDS-L-elsbetiae_contig8366:4511..4661 | 1622816918.6286926-CDS-L-elsbetiae_contig8366:4511..4661 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8366 4512..4661 - |
| 1691683911.794421-CDS-L-elsbetiae_contig8366:4511..4661 | 1691683911.794421-CDS-L-elsbetiae_contig8366:4511..4661 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8366 4512..4661 - |
| 1622816918.6420429-CDS-L-elsbetiae_contig8366:6103..6214 | 1622816918.6420429-CDS-L-elsbetiae_contig8366:6103..6214 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8366 6104..6214 - |
| 1691683911.8047106-CDS-L-elsbetiae_contig8366:6103..6214 | 1691683911.8047106-CDS-L-elsbetiae_contig8366:6103..6214 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8366 6104..6214 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8366.17366.1 >prot_L-elsbetiae_contig8366.17366.1 ID=prot_L-elsbetiae_contig8366.17366.1|Name=mRNA_L-elsbetiae_contig8366.17366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
KLRNSKRQRSRSNRRERILKKGQPPAVGDVVQGYVRKVERSMLLVDVMFP
ELSVLRANKIRTSGEGGKFVDLSEKTRPGDVITVRIE back to topmRNA from alignment at L-elsbetiae_contig8366:4510..6214- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8366.17366.1 ID=mRNA_L-elsbetiae_contig8366.17366.1|Name=mRNA_L-elsbetiae_contig8366.17366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1705bp|location=Sequence derived from alignment at L-elsbetiae_contig8366:4510..6214- (Laminarionema elsbetiae ELsaHSoW15)
AAGTTGCGCAACTCCAAGCGACAACGGTCGCGCAGCAACCGCAGAGAGCG
CATCCTTAAGAAGGGCCAGCCGCCCGCGGTGGGGGACGTGGTGCAGGGAT
ACGTACGCAAGGTACGTACGGAGAATGTATGTAACAAGGAAATATAATAG
TTCGCGAGATAGTTCCTCTTCGTCGCCACGGCGGGGCGACTGTAACGATC
TCCACCCCTCCCCCCACCGATCCCACGGAGCCCCTATAATACGTGCATAC
TAACATGGTTTCGGATTGCGTAAAGCACCAGGGTGATTGTCGCGGTTGCT
GCATAGGCTTCCTGCAATAGAGCTCCCAATTCTCCCAAAGAACTGTGGGG
GCAGTGGGGTGTTTATCTAGGAAAAAGAGTGCCAAATACCTCACGGTGCC
ACTTTTTCGGAATTGGGGTCCCTGCTGCCAGGTAAAGCCCAGATAGACCT
CGCAGCAGAGGCCCCGCGTTTAGCCGCAGAATTGTACATACGCATGCTAT
ATCTGCGTGTAGATGACCCGTGCCCGGGACGACGGAAGCGAAGAGGCAGT
CGGATCGTTTGAATCGTTCGATCGATCGGCGTGCTTGTTTTTTTTCTTTT
CTTTTCTTACGGATTTGTTGTTGCTTTGCTGGCCCTTCGGATCCATTTTA
TTTTTCGTGTACCTTTTCTTAGGTATAAGTTAGCCTGTGACCACGGGAAT
TGACCGCATCAAGTGTTGGATTAGTACGGACATTGAGAGGTGCTGGATGG
AGAGATCGGAACGGTTTTTAATGTGAAGACAACATACAACACACACATAG
ATAAAGATGGATGGATGGATATACCCACACGTTTATGTACCAGTGTGTTT
TTTTTTTTTCGGTTGTGGATGTGAGTGTTTCGTCGAGACCCCTTGCCCCG
AAGAGCCGGGATGACTACCGCTGTACGTTCCATGCAAACTCGTGCCGTAT
GTATTCATCTTGGGGTGTTGTTGATCCGTTGCGGCTGACTGACTGCGGCA
GATGAGTGTTGCTCCGTTGCGTGACAAAAGTGATATCATGGCTGCTCGTT
CTTGGCCTTGGCCTCGGTTGGACTCGTTCGCCCCGTCGGTGGTTCGGGGG
TCGCTCCTGCCTTCCTCTCCGCCCTTCGTTGTGCTGTACTTCCTACGTAC
CGTAACATCCCCCTTGAGAACGCCTCGGGGTGTAAACAATTTTCAGAACC
GATTTTTTTTTTCCCGCAATGGGTGGGTCGCTGCTGTCGGGCCATGTGCC
CTTGGAAGGATCCCGTCGGGATATTTCCGGATTGAATGTTCTTGTTAATC
GCACCCTCTCGGTTGTGTAGAAAATCGGCTTCGAAAAGTGTTTACACCCC
GGGGCGTTATCGAGGGAGATAATACGGTACGTAGATCGTGCCTCACCCGA
AGTAAGTGTGATTCACGGCACCCCTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGCTGTTGCTCAATGCTTGTTGGTTGCTTCCACG
CGATGAGTTTTCCACGCGACCTGTTGCATCGGTTTTGTCACGCGCACTTG
CAGGTGGAGCGCTCGATGCTGCTCGTGGACGTGATGTTCCCCGAGCTTTC
GGTTCTGCGCGCCAACAAGATTCGCACGTCGGGGGAGGGGGGGAAGTTCG
TGGACCTGTCAGAAAAGACGAGGCCGGGGGATGTCATCACCGTGCGCATC
GAGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8366:4510..6214- >mRNA_L-elsbetiae_contig8366.17366.1 ID=mRNA_L-elsbetiae_contig8366.17366.1|Name=mRNA_L-elsbetiae_contig8366.17366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig8366:4510..6214- (Laminarionema elsbetiae ELsaHSoW15)
AAGTTGCGCAACTCCAAGCGACAACGGTCGCGCAGCAACCGCAGAGAGCG
CATCCTTAAGAAGGGCCAGCCGCCCGCGGTGGGGGACGTGGTGCAGGGAT
ACGTACGCAAGAAGTTGCGCAACTCCAAGCGACAACGGTCGCGCAGCAAC
CGCAGAGAGCGCATCCTTAAGAAGGGCCAGCCGCCCGCGGTGGGGGACGT
GGTGCAGGGATACGTACGCAAGGTGGAGCGCTCGATGCTGCTCGTGGACG
TGATGTTCCCCGAGCTTTCGGTTCTGCGCGCCAACAAGATTCGCACGTCG
GGGGAGGGGGGGAAGTTCGTGGACCTGTCAGAAAAGACGAGGCCGGGGGA
TGTCATCACCGTGCGCATCGAGGTGGAGCGCTCGATGCTGCTCGTGGACG
TGATGTTCCCCGAGCTTTCGGTTCTGCGCGCCAACAAGATTCGCACGTCG
GGGGAGGGGGGGAAGTTCGTGGACCTGTCAGAAAAGACGAGGCCGGGGGA
TGTCATCACCGTGCGCATCGAG back to top
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