mRNA_L-elsbetiae_contig833.17337.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig833.17337.1
Unique NamemRNA_L-elsbetiae_contig833.17337.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig833.17337.1 vs. uniprot
Match: D8LLP2_ECTSI (Protein cereblon n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP2_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 1.510e-65
Identity = 122/183 (66.67%), Postives = 132/183 (72.13%), Query Frame = 1 
Query:   13 RQAARHLGVVNRLDSRSGGLLVRTSPVGTTAEIRSGYGGSAGDDADGGG-----GGFAVMARGRHRFRLVEDLGWRRGVRYWKVIICPDLCPGPLRPPIPRAFRDFPGPTR-------GGCYHWAMATPRFVVEKNSPAGLAARAVSLLREQREPLQHGLPPXXXXXXXGARAGSGSVREEGA 525
            +QAARHLGVVNRLDSR GG  V  SPVGTTAE+RSG+GGSA +DADGGG     GG A+MARGRHRFRLVEDLGWRRGV YWKV+ICPD CPG  RPP+PRAFR+FPG  R        G  HW MA PRF V  NSPA LAARA SLLREQREPL HG P           +G+  V EEGA
Sbjct:  133 QQAARHLGVVNRLDSRRGGPHVGASPVGTTAEVRSGHGGSA-EDADGGGEXXXXGGLAMMARGRHRFRLVEDLGWRRGVLYWKVVICPDHCPGTFRPPVPRAFREFPGTDRRGRRRRRDGGNHWPMAVPRFAVVANSPAVLAARAASLLREQREPLPHGAP-----------SGAPQVEEEGA 303
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BLAST of mRNA_L-elsbetiae_contig833.17337.1 vs. uniprot
Match: A0A6H5KP54_9PHAE (CULT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP54_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 3.240e-53
Identity = 108/178 (60.67%), Postives = 115/178 (64.61%), Query Frame = 1 
Query:   13 RQAARHLGVVNRLDSRSGGLLVRTSPVGTTAEIRSGYGGSAGDDADGG----GGGFAVMARGRHRFRLVEDLGWRRGVRYWKVIICPDLCPGPLRPPIPRAFRDFPGP------TRGGCYHWAMATPRFVVEKNSPAGLAARAVSLLREQREPLQHGLPPXXXXXXXG-ARAGSGSVR 513
            +QAARHLGVVNRLDSR              AE+RSG   SA D A GG    GGG A+MARGRHRFRLVEDLGWRRGVRYWKV+IC D CPG  +PP+PRAFR+FPG        R G  HW MA PRF V  NSPA LAARA SLLREQREPL HG          G AR G   VR
Sbjct:  192 QQAARHLGVVNRLDSRXXXXXXXXXXXXXXAEVRSGXXXSAEDAAGGGEGGDGGGLAMMARGRHRFRLVEDLGWRRGVRYWKVVICSDHCPGTFQPPVPRAFREFPGTGRRGRRRRDGGNHWTMAVPRFAVVANSPAVLAARAASLLREQREPLPHGATSGAPQVEEGGARNGGEGVR 369
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig833.17337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLP2_ECTSI1.510e-6566.67Protein cereblon n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5KP54_9PHAE3.240e-5360.67CULT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig833contigL-elsbetiae_contig833:26012..27169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue6.5e-55
Seed eggNOG ortholog2880.D8LLP2
Preferred nameCRBN
KEGG koko:K11793
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009987,GO:0010498,GO:0016567,GO:0019538,GO:0019941,GO:0030163,GO:0031333,GO:0031461,GO:0031464,GO:0031974,GO:0031981,GO:0032092,GO:0032446,GO:0032459,GO:0032460,GO:0032462,GO:0032463,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033333,GO:0033334,GO:0033339,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035107,GO:0035113,GO:0035118,GO:0035138,GO:0035239,GO:0035295,GO:0036211,GO:0042471,GO:0042472,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043269,GO:0043271,GO:0043393,GO:0043412,GO:0043496,GO:0043583,GO:0043632,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0048513,GO:0048519,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048736,GO:0048839,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051128,GO:0051129,GO:0051603,GO:0060173,GO:0060429,GO:0060562,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071599,GO:0071600,GO:0071704,GO:0080008,GO:0090073,GO:0090596,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG1400@1,KOG1400@2759
Ec32 ortholog descriptionPeptidase S16, lon N-terminal
Ec32 orthologEc-04_005010.2
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons3
Model size635
Cds size633
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig833.17337.1prot_L-elsbetiae_contig833.17337.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig833 26012..27168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816916.0529108-CDS-L-elsbetiae_contig833:26011..260791622816916.0529108-CDS-L-elsbetiae_contig833:26011..26079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 26012..26079 +
1691683909.7650056-CDS-L-elsbetiae_contig833:26011..260791691683909.7650056-CDS-L-elsbetiae_contig833:26011..26079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 26012..26079 +
1622816916.0635257-CDS-L-elsbetiae_contig833:26333..264891622816916.0635257-CDS-L-elsbetiae_contig833:26333..26489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 26334..26489 +
1691683909.7852528-CDS-L-elsbetiae_contig833:26333..264891691683909.7852528-CDS-L-elsbetiae_contig833:26333..26489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 26334..26489 +
1622816916.0766275-CDS-L-elsbetiae_contig833:26759..271681622816916.0766275-CDS-L-elsbetiae_contig833:26759..27168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 26760..27168 +
1691683909.7971084-CDS-L-elsbetiae_contig833:26759..271681691683909.7971084-CDS-L-elsbetiae_contig833:26759..27168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig833 26760..27168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig833.17337.1

>prot_L-elsbetiae_contig833.17337.1 ID=prot_L-elsbetiae_contig833.17337.1|Name=mRNA_L-elsbetiae_contig833.17337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=211bp
ETGDRQAARHLGVVNRLDSRSGGLLVRTSPVGTTAEIRSGYGGSAGDDAD
GGGGGFAVMARGRHRFRLVEDLGWRRGVRYWKVIICPDLCPGPLRPPIPR
AFRDFPGPTRGGCYHWAMATPRFVVEKNSPAGLAARAVSLLREQREPLQH
GLPPPPPGGAAGARAGSGSVREEGAAAEALEERGVLRSQSQAPSPPPPPR
GRGGPLRGRRG
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mRNA from alignment at L-elsbetiae_contig833:26012..27169+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig833.17337.1 ID=mRNA_L-elsbetiae_contig833.17337.1|Name=mRNA_L-elsbetiae_contig833.17337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig833:26012..27169+ (Laminarionema elsbetiae ELsaHSoW15)
GAGACCGGCGATCGGCAGGCTGCTAGGCATCTCGGCGTGGTGAACAGGCT
GGATTCACGCAGCGGCGGGTGAGTAGAATCAGCAGTGGTCAGGTGTGTCT
TGCGTGAAAGCTCGGTTGAAATGTGCATCACGCGTGTTCACAGCGGTATT
TTGGCCGCCGCTCCGTGAATGGAAAGATGCTGAATTAACTACAGCAGTTA
GTAGAGGTATCCTTCTTGGGGTGGCAGAATATCGCGTGTAGGTATACTAC
TCCTATTCGAACCGACAAGCGAGCAACCTCCCGCTTTCATGCGCCCTTTT
GGTGCGTAAAAAACGCATCCAGGTTGTTGGTCCGAACATCGCCGGTTGGG
ACAACCGCCGAGATACGCTCGGGATACGGGGGCTCTGCCGGCGACGATGC
CGACGGCGGGGGTGGAGGTTTTGCCGTCATGGCCAGGGGCCGGCATCGGT
TTCGCCTGGTGGAGGATCTAGGCTGGAGGTGCGCGGACGAAGCTAACTAT
TCGCAGATCGTTTAACCCGTAGCCTCTGAGTTGTGAACGTGGACCGCTGG
CTGGCGTGCGAAGTGTGGTGCTAGAAACCATTCCCAGGAGAACGAAACGA
GAGAAAGGCGATTGCCTCCACGTTCCACAGAGCAGCGAGTTCGTCATCTT
TAGCCCGCCCCGTTTGTGTTTTTTTCAATCCCAACCTACCGCTTCCCGTC
TCATCGGGTTTTCTGTTTCTGAACATGAACGGCGGGAAACTGCAACAGGA
GGGGCGTCCGCTACTGGAAAGTGATAATTTGCCCGGACCTCTGCCCGGGA
CCGCTCCGCCCCCCGATCCCCCGCGCGTTCCGCGACTTCCCCGGCCCCAC
CCGCGGCGGCTGCTACCACTGGGCAATGGCAACGCCCCGCTTTGTAGTCG
AAAAAAACTCTCCGGCAGGGCTCGCGGCGAGGGCTGTTTCTCTTCTCCGC
GAGCAGCGGGAGCCGCTTCAGCACGGCCTGCCACCACCACCCCCAGGCGG
CGCGGCGGGAGCGAGGGCAGGGTCGGGGTCGGTGCGAGAGGAAGGGGCGG
CAGCGGAAGCACTGGAAGAAAGAGGTGTCCTGCGATCACAATCCCAAGCC
CCATCGCCCCCGCCACCGCCACGGGGGCGCGGAGGTCCGCTTCGTGGCCG
TAGGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig833:26012..27169+

>mRNA_L-elsbetiae_contig833.17337.1 ID=mRNA_L-elsbetiae_contig833.17337.1|Name=mRNA_L-elsbetiae_contig833.17337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig833:26012..27169+ (Laminarionema elsbetiae ELsaHSoW15)
GAGACCGGCGATCGGCAGGCTGCTAGGCATCTCGGCGTGGTGAACAGGCT
GGATTCACGCAGCGGCGGGAGACCGGCGATCGGCAGGCTGCTAGGCATCT
CGGCGTGGTGAACAGGCTGGATTCACGCAGCGGCGGGTTGTTGGTCCGAA
CATCGCCGGTTGGGACAACCGCCGAGATACGCTCGGGATACGGGGGCTCT
GCCGGCGACGATGCCGACGGCGGGGGTGGAGGTTTTGCCGTCATGGCCAG
GGGCCGGCATCGGTTTCGCCTGGTGGAGGATCTAGGCTGGAGGTTGTTGG
TCCGAACATCGCCGGTTGGGACAACCGCCGAGATACGCTCGGGATACGGG
GGCTCTGCCGGCGACGATGCCGACGGCGGGGGTGGAGGTTTTGCCGTCAT
GGCCAGGGGCCGGCATCGGTTTCGCCTGGTGGAGGATCTAGGCTGGAGGA
GGGGCGTCCGCTACTGGAAAGTGATAATTTGCCCGGACCTCTGCCCGGGA
CCGCTCCGCCCCCCGATCCCCCGCGCGTTCCGCGACTTCCCCGGCCCCAC
CCGCGGCGGCTGCTACCACTGGGCAATGGCAACGCCCCGCTTTGTAGTCG
AAAAAAACTCTCCGGCAGGGCTCGCGGCGAGGGCTGTTTCTCTTCTCCGC
GAGCAGCGGGAGCCGCTTCAGCACGGCCTGCCACCACCACCCCCAGGCGG
CGCGGCGGGAGCGAGGGCAGGGTCGGGGTCGGTGCGAGAGGAAGGGGCGG
CAGCGGAAGCACTGGAAGAAAGAGGTGTCCTGCGATCACAATCCCAAGCC
CCATCGCCCCCGCCACCGCCACGGGGGCGCGGAGGTCCGCTTCGTGGCCG
TAGGGGGGAGGGGCGTCCGCTACTGGAAAGTGATAATTTGCCCGGACCTC
TGCCCGGGACCGCTCCGCCCCCCGATCCCCCGCGCGTTCCGCGACTTCCC
CGGCCCCACCCGCGGCGGCTGCTACCACTGGGCAATGGCAACGCCCCGCT
TTGTAGTCGAAAAAAACTCTCCGGCAGGGCTCGCGGCGAGGGCTGTTTCT
CTTCTCCGCGAGCAGCGGGAGCCGCTTCAGCACGGCCTGCCACCACCACC
CCCAGGCGGCGCGGCGGGAGCGAGGGCAGGGTCGGGGTCGGTGCGAGAGG
AAGGGGCGGCAGCGGAAGCACTGGAAGAAAGAGGTGTCCTGCGATCACAA
TCCCAAGCCCCATCGCCCCCGCCACCGCCACGGGGGCGCGGAGGTCCGCT
TCGTGGCCGTAGGGGG
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