mRNA_L-elsbetiae_contig83.17307.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig83.17307.1
Unique NamemRNA_L-elsbetiae_contig83.17307.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig83.17307.1 vs. uniprot
Match: A0A6H5KVF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF2_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.940e-5
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 3 
Query:  120 PSSWKEEELLLKIDGEIKARNPNLEA 197
            PS WKEEELLLKIDGEIKAR+PNLEA
Sbjct:  853 PSGWKEEELLLKIDGEIKARSPNLEA 878
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig83.17307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVF2_9PHAE1.940e-592.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig83contigL-elsbetiae_contig83:41231..45066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size477
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig83.17307.1prot_L-elsbetiae_contig83.17307.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig83 41805..44987 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.3478677-UTR-L-elsbetiae_contig83:41230..412541622816913.3478677-UTR-L-elsbetiae_contig83:41230..41254Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig83 41231..41254 +
1691683907.7410269-UTR-L-elsbetiae_contig83:41230..412541691683907.7410269-UTR-L-elsbetiae_contig83:41230..41254Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig83 41231..41254 +
1622816913.3624308-UTR-L-elsbetiae_contig83:41724..418041622816913.3624308-UTR-L-elsbetiae_contig83:41724..41804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig83 41725..41804 +
1691683907.7532794-UTR-L-elsbetiae_contig83:41724..418041691683907.7532794-UTR-L-elsbetiae_contig83:41724..41804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig83 41725..41804 +
1622816913.4188757-UTR-L-elsbetiae_contig83:44987..450661622816913.4188757-UTR-L-elsbetiae_contig83:44987..45066Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig83 44988..45066 +
1691683907.7930002-UTR-L-elsbetiae_contig83:44987..450661691683907.7930002-UTR-L-elsbetiae_contig83:44987..45066Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig83 44988..45066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.377572-CDS-L-elsbetiae_contig83:41804..418941622816913.377572-CDS-L-elsbetiae_contig83:41804..41894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 41805..41894 +
1691683907.7638643-CDS-L-elsbetiae_contig83:41804..418941691683907.7638643-CDS-L-elsbetiae_contig83:41804..41894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 41805..41894 +
1622816913.3910646-CDS-L-elsbetiae_contig83:42903..429781622816913.3910646-CDS-L-elsbetiae_contig83:42903..42978Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 42904..42978 +
1691683907.7725668-CDS-L-elsbetiae_contig83:42903..429781691683907.7725668-CDS-L-elsbetiae_contig83:42903..42978Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 42904..42978 +
1622816913.4072442-CDS-L-elsbetiae_contig83:44858..449871622816913.4072442-CDS-L-elsbetiae_contig83:44858..44987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 44859..44987 +
1691683907.7817452-CDS-L-elsbetiae_contig83:44858..449871691683907.7817452-CDS-L-elsbetiae_contig83:44858..44987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig83 44859..44987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig83.17307.1

>prot_L-elsbetiae_contig83.17307.1 ID=prot_L-elsbetiae_contig83.17307.1|Name=mRNA_L-elsbetiae_contig83.17307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MPTHSPSSWKEEELLLKIDGEIKARNPNLEALFKVFDRSNRGTVTEAQFF
SLLDQGLPRIHFTEANITTLAKLFVDRTGCDFGGQVRYKQFMEAVGA*
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mRNA from alignment at L-elsbetiae_contig83:41231..45066+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig83.17307.1 ID=mRNA_L-elsbetiae_contig83.17307.1|Name=mRNA_L-elsbetiae_contig83.17307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3836bp|location=Sequence derived from alignment at L-elsbetiae_contig83:41231..45066+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGCTCGGCAGAAGTGGCCCAGGTAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGCTACAAGCGTAGCTAGCTGTAGTTGTGGCCAACTCGCATATATA
TATACCGGGCCGCTGTCTGCCGGGTGTGGTAGTAGTGCAGGCCAATCATC
ACCCGACCATGTGTTCACTGTGGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTCTTCACATTAAAAACCGTTCAATCTCTGTATCCAGCACAC
CTCCCGGAGTACGATGCGCCGATGAAATAACTCTCGACACGAATCAGGGC
GTGGCCGGTCCGGCCCCTTCTCCTATGACGCGCTGGCAGCTGGATTTTTA
TTGCTCGAAGCTCTCCCACCGGGCGGGCGAGCGAGTGAATGATCTATCAT
AAAAGGATTCGGGTATGAATCTACGAATGAATGCCATTCACAACTACATC
GTTCTCTCTCTCGCGCGAACTAACGTGTTTCGCCCGGAACAAAGGCACCG
TCGACGGTGGCTCGACGGTGGGGTCCAGCGCGGGGAAAGAAGTCGGCCGC
AGAGGCAGCGGCAGCAGGGGCGGCATGCCGACCCATTCCCCGTCAAGCTG
GAAGGAGGAGGAGCTCCTGCTCAAAATAGACGGAGAGATCAAGGCCAGAA
ACCCAAACCTTGAGGTAAAGGAGAGAGAGGCGTCTATCTACACTGTTATC
AATCAATCAATGCTAAAGGTGGAATGACTTTGATGATTCCTCGTTGCATT
AGTTGCGCTTCCTAAAAACGTATTACTTGGCTAAAAGACACCACAATCAA
CCCATGGAGCAATCGAAGAGGGAAGACGTTCGGCTCAACAATGATCGATA
ATCAAACTCAGGAACCTGAAGCCTAAAATGAATACCTATGATAAACCCCC
GCGTACTGCTGCTGCTGATGTCATGCATCGCTTTGGCTGGAGGCGCTATG
TTGCGCCCCCGGTGTTTGAGTGACACAAACTCCAAGCGCGATTCGTGGCG
TTGACACCTTTGATTTTGTACGGGCGAGACGCCGGCGCCCGGGAATCCGC
CAACATTGGGTTCTGCAGGCGTGTCTCGTGTTGGTAGACTTTTCCTTCCT
GCCAATGTTGGCCGGATTCCCGGGCGCCGAGACGCAAGACCCTCTCGGGG
CCCAGTTTAGCACCGCCGGGCGGGTATGTACCACCATTTTGTTTTATATA
TCCTCCGCGGCGTCGCGAGTGTGCCTTACTTTGTGACAACGGGCCCCGAA
GGACATTTTGGACCAGAGAGCTAATGTGAGAAACAACAACAACAACAACA
ACAACAACAACAACAACAACACCAACATTGCCTTCATTTTCTTGGTCGAC
TCCTGTGTGCACCTGGGCCTAGATGATGTTAGGAGGAAGGGGCTTGAAAT
ACAAAAGAAAATGCACTACCACCACCGTCGTGTGGTACAAACATGAGAAT
AAGTCACCCTTCTCACGCCGGACAGCGACAAACTTGAGACTATGTAACTT
GAGACAGACTCGAGGCTGGATCCGATCGATGAACATACATGTATTAATCA
TAGACTATATCACATGTATCAAGATATACCACCGATTATTTTCCCCCCGA
CAACACTACACTACTTGAACATCGAACATGGTGCCGGAAACCCCTTGTCT
ATATCAATCGGTTGTTGTTGCAGGCGCTCTTCAAGGTGTTCGACCGTTCC
AATAGGGGGACTGTGACGGAGGCCCAGTTCTTCTCTCTGCTCGATCAGGC
AAGTACTCCACCTCTCCAAGCGCTCCTCCTTTATTAATCAATGCATTTTT
GGTCTATCTAGAATATGTATCTACATAGCTTGTACCCTTCTGCGTGACAA
ATTTTTATCCAGGTAGCCGGCGCCGAAAAACACGGCGCCTACTCATTCGC
CAGGGAAAACAACGTGGGGAAAATGGTGCAATAATTCTCCGCACAGACCA
ACATACTTGATCACCGCCGTGTAGTTACGGAAAGTGCGCCATGGGCGAAC
GCTCGGTTCGTCAGTTTGCTGCAACTCCGATGTATAGATACACAGGTGGC
CAGAGGTACACGTTGCGGTACGTTGGACTGCTATACAACCTCCGAGGTTG
GCAGGTAGGTTGAGAGAGAGTCCTCAACCCTGGGATTGTGGTCTACAACG
TCCTTCCCAACCTGGAATCCAGTCTTTGGCTGCACAAGGCAGCGCAACGT
ACAAGGACGTTGTGGAAATTTTCAAACTTTTCACCAAAATGTCCAAGACA
TGTTATTTTTTTGTATTTGAAAGAACGACGTAAATCTGAAATTTAATTAC
CACTGTTTTTTTTTTTGTCTTTGTTATTTTTTTGTATTTGAAAGAACGAC
GTAAATCTGAAATTTAATTTACACCATTTGTTTTTTGTCTTGGAGAAAAA
ATTATGATACTGACACGACAGAAAATTTCTCCGAAAATGTGCAAGACATG
TTATTTTTTTGTATTTGAAAGAACGGCATAAATCTGAAATTTAATTTCCA
CCATTTTTTTTTTGTCTTGGAGAAAAAAAAATTGATGACTAGACAAAATT
TTTCTATGAAATATGCAAGACATGTTATTTTTTTGTATTTATTTATTTCA
AAGAACGGCATACATCTAAAATTTAATTTGTACCATGGGTACTATTTTTT
TTTTGTCTTGGAGAAAAAAATGTGATGACACGACAGAAATTTTCTCTGAA
AAAATGCGAAGACATGTTATTTTTGTGTATTTCAAAAAACGGCCTAAATC
TGAAATTTCATTTCTTCTACTAAAAAATACTTCGTATATATTTCAAGTCC
TACATAAAAAAACTTGCCGAAAAACGATATTCCCCAAAAACATTAAAAAA
AAAAGGAAATTGAGAGTTATTTTGTACTACTCCCTTCTTTGTTGGTGATT
CAATGAACGACAGCGCCACGCAAACGTTTAAATGTCTCATTTTTTGTGAT
AAACAAACTTGAGCCAGTTTATTTGTACTCCGTGTCAATCATCATATCTT
CAATCGAACGTGAAATCACATTTCACCAATGATAACTACAATGTACTGCA
GTGCGGAAAGATCCTCAGATAGCCTACTCCTATTTTTGAGTAGCATTGAC
TGGCTTTTTCGGGCTGATACGTTTCTGAATTGAAGTATATATTTTTTAAA
ATATCCCACTCAACATCTAAAAATATGGGGTAGAGGTCCGGGCGGCGTGC
GTGAGTGAAGAATTTGTGGAATTCGAGCCCGCCTCTTACCTAATTTTTTC
GCTTTATTTTATTTGAAATCCGGCCGAATGGAAAAAAGACAGCTAGCTGT
AAAAAGACCTTCAGCGCATAGACTATGCCCGATGCCTCTCTTGCGTGCAG
GAGCCAACTGAGGTAAATAACCCCCACACACGGTAGTTAGTTTCCATCTT
GTTTTGTGTTCACCCCGTTCACATGCCATAAAATACGCCGTACGTACATA
GAAGTAGTTTTTTGGCCCATGTACACCTACCGGCAGGATAGCCAATTGGA
TGCGAGAGTCCGACATCAATGTGCGCTTATCCCCAAAACTCTCGGCTTGT
TTTCTTGTTGAACTGGGCTGTTTAATCTTAGTATTTGCCTGTGAATCGAT
TGTTGTTGTTTGGTCCGCGAAACAACAGGGACTGCCGAGGATCCACTTCA
CCGAAGCAAACATCACCACTTTGGCGAAGCTGTTTGTAGACCGCACGGGT
TGTGACTTTGGGGGGCAGGTCAGGTACAAGCAATTCATGGAGGCCGTAGG
TGCCTAGGCAAATACCGGGGGTAAGACGGGAGGCGATGCGGGTATCGTTT
ATTTCGTGGCGCATGTGCCTCTGCTGAAGAGTGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig83:41231..45066+

>mRNA_L-elsbetiae_contig83.17307.1 ID=mRNA_L-elsbetiae_contig83.17307.1|Name=mRNA_L-elsbetiae_contig83.17307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig83:41231..45066+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGACCCATTCCCCGTCAAGCTGGAAGGAGGAGGAGCTCCTGCTCAA
AATAGACGGAGAGATCAAGGCCAGAAACCCAAACCTTGAGATGCCGACCC
ATTCCCCGTCAAGCTGGAAGGAGGAGGAGCTCCTGCTCAAAATAGACGGA
GAGATCAAGGCCAGAAACCCAAACCTTGAGGCGCTCTTCAAGGTGTTCGA
CCGTTCCAATAGGGGGACTGTGACGGAGGCCCAGTTCTTCTCTCTGCTCG
ATCAGGCGCTCTTCAAGGTGTTCGACCGTTCCAATAGGGGGACTGTGACG
GAGGCCCAGTTCTTCTCTCTGCTCGATCAGGGACTGCCGAGGATCCACTT
CACCGAAGCAAACATCACCACTTTGGCGAAGCTGTTTGTAGACCGCACGG
GTTGTGACTTTGGGGGGCAGGTCAGGTACAAGCAATTCATGGAGGCCGTA
GGTGCCTAGGGACTGCCGAGGATCCACTTCACCGAAGCAAACATCACCAC
TTTGGCGAAGCTGTTTGTAGACCGCACGGGTTGTGACTTTGGGGGGCAGG
TCAGGTACAAGCAATTCATGGAGGCCGTAGGTGCCTAG
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