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Homology
BLAST of mRNA_L-elsbetiae_contig8289.17296.1 vs. uniprot
Match: A0A6H5JP19_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP19_9PHAE) HSP 1 Score: 192 bits (488), Expect = 2.430e-50 Identity = 183/486 (37.65%), Postives = 265/486 (54.53%), Query Frame = 1
Query: 1 IDATGCGQNSN--KNELCKKLVDGCKKVTQLLNQSARAKIQLEDSTAEEAANSDGEDGRVSKAKIAQPANQRLVSITKVLHVMLIKFPNLKAFWLDHRDTAFPLVDKHKELEEVFSILTEVKNTIECCQSTSKPVCLEAMQQLLSLCRSTLNLDKPLKISKVTP---EGGKEKPGALTVELRPVGDLSSTGLETRKAYREAVAARTVKLWYGDKYEENSFLLDMAMAMSPLGRPLNYLDALAGSSGKFGAENGYFTQAPQKIREKVWENIADLAEKSNTEERARKAATSGGNGTDGDXXXXXXXXXXXXXXXXXXXXXXXSSANPQLAAMADMGIFAPLPAEAGSAPSEETPRQEAERAVETWRNAVIPTEFAAALRGIDVCFFWKKHGDTICPQLKPVAQSILGLPPASAVLERDFCIADGFKTRKRSCVGPAYLEMMLFSRANYHLIPNRIPELDASQMKAAIPVRLTDPSKLGQVAQLDVLPE 1443
ID TG +N KN C+ L++ CKKV Q +N+S KI+LED T E+A+ DG+ KAK++Q +QR +S+ K+L +L ++ + + +R+ FPL D +E+EEV+S+L+E K IE Q+T + +A++ + L TL+ + L++ V EG K + E DL+ G TR A R+A+ AR + YG + + L D M +SP R L Y+DAL S+ K G ++ I+ K+ E + DL + RA A + GG + XXXXXXXXXXXXXXXXXXXXXXX ++ + P EE PR+EAE ++ W A IP E R + +W+ HG L+ VAQ++ G+P ++ V+ERDF IAD F RKR+ + PAYLEM L+ RA++ IP IP+LD + + AAIP R DP + +V LD E
Sbjct: 170 IDGTGMANTANQSKNLSCRGLMEICKKVVQHVNRSQGFKIELED-TLEKAS-----DGKRWKAKLSQAVSQRWISLCKMLLRILEQWVAIDKVYASNREK-FPLGDLRREMEEVYSMLSEFKAVIEYSQTTHEATAQKALEMTVDLLTYTLDPAERLRVYHVVSIGAEGDTTKYDDIEHE-----DLTPIGRNTRVALRKALVARFLPR-YGRELDAGGHLFDRTMLLSPNQRKLRYVDALRSSAAKEGD-----MRSSSAIKAKIKEEVTDLLVAAIEAIRAT-APSDGGVESSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGSDSDMDATPVEEDPRKEAEAMMKEWLAAQIPPEE----RTENGAEYWRLHGKKHPFALRLVAQAVYGVPASAGVVERDFSIADLFMPRKRASLDPAYLEMQLYLRAHFDSIPMDIPKLDDASVAAAIPDRFRDPQAVEEVRVLDFTEE 632
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 96.3 |
Seed ortholog evalue | 3.6e-17 |
Seed eggNOG ortholog | 2880.D7G3L2 |
Hectar predicted targeting category | other localisation |
EggNOG OGs | 2CZK4@1,2SARG@2759 |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 4 |
Model size | 1485 |
Cds size | 1239 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816912.2872784-UTR-L-elsbetiae_contig8289:4477..4483 | 1622816912.2872784-UTR-L-elsbetiae_contig8289:4477..4483 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8289 4478..4483 - |
1691683906.9626951-UTR-L-elsbetiae_contig8289:4477..4483 | 1691683906.9626951-UTR-L-elsbetiae_contig8289:4477..4483 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8289 4478..4483 - |
1622816912.3301618-UTR-L-elsbetiae_contig8289:6983..7112 | 1622816912.3301618-UTR-L-elsbetiae_contig8289:6983..7112 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8289 6984..7112 - |
1691683907.0114002-UTR-L-elsbetiae_contig8289:6983..7112 | 1691683907.0114002-UTR-L-elsbetiae_contig8289:6983..7112 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8289 6984..7112 - |
1622816912.3426044-UTR-L-elsbetiae_contig8289:7907..8018 | 1622816912.3426044-UTR-L-elsbetiae_contig8289:7907..8018 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8289 7908..8018 - |
1691683907.0224786-UTR-L-elsbetiae_contig8289:7907..8018 | 1691683907.0224786-UTR-L-elsbetiae_contig8289:7907..8018 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8289 7908..8018 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816912.297523-CDS-L-elsbetiae_contig8289:4483..4876 | 1622816912.297523-CDS-L-elsbetiae_contig8289:4483..4876 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8289 4484..4876 - |
1691683906.977448-CDS-L-elsbetiae_contig8289:4483..4876 | 1691683906.977448-CDS-L-elsbetiae_contig8289:4483..4876 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8289 4484..4876 - |
1622816912.3088138-CDS-L-elsbetiae_contig8289:5243..6005 | 1622816912.3088138-CDS-L-elsbetiae_contig8289:5243..6005 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8289 5244..6005 - |
1691683906.9896765-CDS-L-elsbetiae_contig8289:5243..6005 | 1691683906.9896765-CDS-L-elsbetiae_contig8289:5243..6005 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8289 5244..6005 - |
1622816912.3200712-CDS-L-elsbetiae_contig8289:6899..6983 | 1622816912.3200712-CDS-L-elsbetiae_contig8289:6899..6983 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8289 6900..6983 - |
1691683907.0008357-CDS-L-elsbetiae_contig8289:6899..6983 | 1691683907.0008357-CDS-L-elsbetiae_contig8289:6899..6983 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8289 6900..6983 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8289.17296.1 >prot_L-elsbetiae_contig8289.17296.1 ID=prot_L-elsbetiae_contig8289.17296.1|Name=mRNA_L-elsbetiae_contig8289.17296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=413bp
MLIKFPNLKAFWLDHRDTAFPLVDKHKELEEVFSILTEVKNTIECCQSTS KPVCLEAMQQLLSLCRSTLNLDKPLKISKVTPEGGKEKPGALTVELRPVG DLSSTGLETRKAYREAVAARTVKLWYGDKYEENSFLLDMAMAMSPLGRPL NYLDALAGSSGKFGAENGYFTQAPQKIREKVWENIADLAEKSNTEERARK AATSGGNGTDGDGNGTGGDGNGTGGNGTSGGTQGASSANPQLAAMADMGI FAPLPAEAGSAPSEETPRQEAERAVETWRNAVIPTEFAAALRGIDVCFFW KKHGDTICPQLKPVAQSILGLPPASAVLERDFCIADGFKTRKRSCVGPAY LEMMLFSRANYHLIPNRIPELDASQMKAAIPVRLTDPSKLGQVAQLDVLP EAGGGGSDSDTD* back to topmRNA from alignment at L-elsbetiae_contig8289:4478..8018- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8289.17296.1 ID=mRNA_L-elsbetiae_contig8289.17296.1|Name=mRNA_L-elsbetiae_contig8289.17296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3541bp|location=Sequence derived from alignment at L-elsbetiae_contig8289:4478..8018- (Laminarionema elsbetiae ELsaHSoW15) ATCGATGCCACTGGCTGCGGACAGAACAGCAACAAGAACGAGCTGTGCAA
GAAGTTGGTCGACGGCTGCAAGAAGGTGACTCAGCTTCTGAACCAGTCCG
CCAGGGCGAAGGTGAGCTTTAAACCTTTTGTTCATTGAACCGCAAAACTT
AAGAATTTTGTATCAGTGCTGGAACGGAAGGGGAGCTGTAAACATTTTTT
CGGAGCTGTAAACGTTTTTTCGGGAGAAAACGGCAGGGCCGGTGAAAACC
TCGGCGAAGAAGGAGCCCGGCGAAACTAGTAGGGGCACGAACATGGAGTC
GCCCCTTCAAGTACTTTGTATATACATATACATATACATATGTGACATGT
ATGCTAGCTGTAGTTGTGCAGAGCATCCCTTTTCGGGGCGCTGTCCCTGC
TTTTTTTGTATGGCGTTTGGGTTCATCTCAATTTCGAGTCCGCGTTGTTG
GGTCGGTACGCGCGATGAAAGGCCCCGAGAAGAAATATAAACGCTGCAAA
TTCGATGACAGCAAAAAAGCAGAAGAATGACAACACGCTGTTTTAGCCTG
TTCCCCATGTGTGAAAACGATGGAAGGGCGATGTTTTGTATTTTTGTTTT
TTGGTGGACGAAGGTAACACACAGAAACCAACATGAGCACTGCGGCCCAA
GTGAATTAACTTAGACGGGGGGTTCAAAATTTCGAAGATGAGTTGGGCGT
GGACTTGCAGCGGGGGCGGGGAGACGGAGGGCCCCCTGAAAAGATGCGGC
AGCTTTTCACCCTGCACAGGCGTCTTTCTCCCATCTGATAATCGAAAAGC
TCCGAGTCATCTGTGCACTCGTAGGATTTCCATCCGCGTGCGAACATAGC
AACGCACGTTTTAAGCTCGATCGTGGCCCCCTTATTTTTCCTTGCGCGCT
CACCAGATCCAGCTAGAGGATTCTACCGCGGAGGAAGCGGCTAACTCCGA
TGGCGAGGACGGGCGTGTCTCCAAGGCCAAGATCGCCCAGCCTGCCAACC
AACGCCTGGTCAGCATCACCAAAGTCCTCCACGTCATGCTCATCAAGTTC
CCCAACCTCAAGGCCTTTTGGCTTGACCACCGGGACACGGCCTTCCCCTT
GGTGGACAAGCACAAGGAGGTAAGTTCCGGATGACGGGATGAGAGGTCCC
TGTGAGGACCTGAAAGCGTATCCTTTCTATGTATGTATGCGTCACCACTC
GAGGGTGTTGCACCTACCATGAAAAAGTTGCAAATAAAACTCCTGTGTGA
TGCCGTTGAGGATGAGCTTTGCTGTGCATGCAGGTATGGTTCGTTCAGCC
AAAGATTTCCATATTTTTACGGATTCGTTCCTTTTGATTATTGCATACAA
ATGTCAGCAGCCTACGTCCAGTCTGTGAAAAAATCGTTCCAGAGAGAATT
GTTGTAAATAGCTTTTGAAAGATTTCGAGTTAGGTGAACTTCTAGCCATC
CTCCATGTAGCGTGCTATGTAGTGATCCTCACAACATCGCGAAAATATAT
ATCAAAAACTATGTTTTGCACATTCAGGGCACCCCTGCTCTATGTTCAAG
TCATTTTTGAGTCTGACACCAAAACAATATTGAAGACTGAGGAAAAGCTC
TGGGTTGTGCACGAAATGCTGCCAAAATTTCGAATATCTCGAGAACTGGA
GTTTGAATTCACAGTCGGAAAAAACTTACCCCTGGCGATTTTCGAGAAGA
ATCCATTGATGTGCTTCATTTTCAAATTGTACGGTTGGATTGTCCAAGAT
CAACTAAGCAAGTTTTGGCTCCCATGTTTTTGGAGCCGCGCAGGGAATGC
CCTCCTCTGAAAATGAGTGGCAACTACCGGTCAAGAAATGGCGTTTTGAA
GCTATGTATGTATGGACGAAAAGAGAAAGGTTTCCCGGATTGGAGCGTTT
GGAATTTGCAGCACTTTCGCTGTCCGATTGGTGGGCGCCCCCGCGGTTTT
AATAACTCCCCTTTTCTGTCCCGATCCTGTCCCATGTTTTGGTTTTACGT
CTATTCTTCGTAGTTGGAGGAAGTCTTCAGCATCCTGACTGAGGTAAAGA
ACACAATCGAGTGCTGCCAGTCCACCAGCAAGCCCGTGTGCCTCGAAGCG
ATGCAGCAACTCCTATCGCTCTGTCGTTCAACGCTGAACCTCGACAAACC
GCTCAAGATCTCCAAGGTCACGCCGGAAGGCGGGAAGGAGAAGCCTGGCG
CTTTGACGGTAGAGCTAAGACCGGTGGGGGACCTTTCGTCGACAGGCTTG
GAGACGCGGAAGGCGTACCGAGAAGCAGTGGCTGCGCGCACCGTTAAGCT
GTGGTACGGGGACAAGTACGAGGAGAACAGCTTTCTGCTGGACATGGCGA
TGGCAATGTCCCCCCTCGGCCGCCCGCTCAATTACCTGGATGCGCTCGCC
GGAAGCAGCGGAAAGTTCGGAGCAGAAAACGGCTATTTCACACAGGCCCC
TCAGAAGATCCGCGAGAAGGTTTGGGAAAATATTGCAGATCTCGCGGAGA
AATCGAACACCGAAGAACGAGCCCGCAAGGCAGCGACCTCAGGCGGCAAC
GGCACGGATGGTGACGGCAACGGTACGGGCGGTGATGGCAACGGCACGGG
CGGCAACGGCACCTCTGGAGGCACCCAGGGCGCTTCTTCTGCCAACCCCC
AGCTTGCGGCTATGGCCGATATGGGAATCTTTGCCCCTCTACCAGCCGAA
GCTGGAAGCGCACCGTCGGAGGAGACACCACGGCAGGAAGCAGAGAGAGC
GGTGGAAACCTGGAGGAATGCAGTGGTGAGCATTTGCCTGTGTCGTCTTC
GTTTTTTCCAAGCCCCTTCTTTGAAACATTGTTGCCGACTTAACCGCAAG
TAGGGCAGCGCTGCAGATCCGCTTTGTATGATTTCGTACGACTCTTGGTT
TCAGTGAGGGCGTCGGGTTAGCTTTGTTCACTTGTTGACTCCCCGACTTT
TAACCGTTCTACGCGAATCAGGCCATGGTGTCAAGCTGTGGGAATTGCGA
TCCTTGAGGTGGGATAGAAAAAAAACGCACGGTGGGAGAAACCACAACTA
AAATAATACATGCGCCCTGAATGCATTAATTCTCAATAGAAAAATAAAGC
GAAGCTCATGCTTGTGCACGACGTGTTTGTTACTTTGTCCAGATTCCGAC
CGAGTTTGCGGCGGCCTTGCGAGGAATCGATGTGTGTTTCTTTTGGAAGA
AGCACGGCGACACGATCTGCCCCCAACTGAAGCCCGTCGCGCAGTCCATT
CTTGGGCTCCCGCCTGCATCAGCTGTGCTCGAGCGAGACTTCTGCATCGC
AGACGGTTTTAAGACGAGGAAGCGGTCTTGTGTCGGCCCCGCTTACCTCG
AGATGATGCTGTTCTCTCGCGCAAACTACCACCTCATTCCCAACCGCATC
CCTGAGCTGGATGCATCCCAGATGAAGGCAGCGATCCCCGTGCGTCTGAC
TGACCCTTCGAAGCTGGGACAGGTGGCACAACTCGATGTCTTGCCGGAGG
CGGGGGGGGGCGGATCCGACTCGGACACGGACTAGACGGGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8289:4478..8018- >mRNA_L-elsbetiae_contig8289.17296.1 ID=mRNA_L-elsbetiae_contig8289.17296.1|Name=mRNA_L-elsbetiae_contig8289.17296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2478bp|location=Sequence derived from alignment at L-elsbetiae_contig8289:4478..8018- (Laminarionema elsbetiae ELsaHSoW15) ATGCTCATCAAGTTCCCCAACCTCAAGGCCTTTTGGCTTGACCACCGGGA CACGGCCTTCCCCTTGGTGGACAAGCACAAGGAGATGCTCATCAAGTTCC CCAACCTCAAGGCCTTTTGGCTTGACCACCGGGACACGGCCTTCCCCTTG GTGGACAAGCACAAGGAGTTGGAGGAAGTCTTCAGCATCCTGACTGAGGT AAAGAACACAATCGAGTGCTGCCAGTCCACCAGCAAGCCCGTGTGCCTCG AAGCGATGCAGCAACTCCTATCGCTCTGTCGTTCAACGCTGAACCTCGAC AAACCGCTCAAGATCTCCAAGGTCACGCCGGAAGGCGGGAAGGAGAAGCC TGGCGCTTTGACGGTAGAGCTAAGACCGGTGGGGGACCTTTCGTCGACAG GCTTGGAGACGCGGAAGGCGTACCGAGAAGCAGTGGCTGCGCGCACCGTT AAGCTGTGGTACGGGGACAAGTACGAGGAGAACAGCTTTCTGCTGGACAT GGCGATGGCAATGTCCCCCCTCGGCCGCCCGCTCAATTACCTGGATGCGC TCGCCGGAAGCAGCGGAAAGTTCGGAGCAGAAAACGGCTATTTCACACAG GCCCCTCAGAAGATCCGCGAGAAGGTTTGGGAAAATATTGCAGATCTCGC GGAGAAATCGAACACCGAAGAACGAGCCCGCAAGGCAGCGACCTCAGGCG GCAACGGCACGGATGGTGACGGCAACGGTACGGGCGGTGATGGCAACGGC ACGGGCGGCAACGGCACCTCTGGAGGCACCCAGGGCGCTTCTTCTGCCAA CCCCCAGCTTGCGGCTATGGCCGATATGGGAATCTTTGCCCCTCTACCAG CCGAAGCTGGAAGCGCACCGTCGGAGGAGACACCACGGCAGGAAGCAGAG AGAGCGGTGGAAACCTGGAGGAATGCAGTGTTGGAGGAAGTCTTCAGCAT CCTGACTGAGGTAAAGAACACAATCGAGTGCTGCCAGTCCACCAGCAAGC CCGTGTGCCTCGAAGCGATGCAGCAACTCCTATCGCTCTGTCGTTCAACG CTGAACCTCGACAAACCGCTCAAGATCTCCAAGGTCACGCCGGAAGGCGG GAAGGAGAAGCCTGGCGCTTTGACGGTAGAGCTAAGACCGGTGGGGGACC TTTCGTCGACAGGCTTGGAGACGCGGAAGGCGTACCGAGAAGCAGTGGCT GCGCGCACCGTTAAGCTGTGGTACGGGGACAAGTACGAGGAGAACAGCTT TCTGCTGGACATGGCGATGGCAATGTCCCCCCTCGGCCGCCCGCTCAATT ACCTGGATGCGCTCGCCGGAAGCAGCGGAAAGTTCGGAGCAGAAAACGGC TATTTCACACAGGCCCCTCAGAAGATCCGCGAGAAGGTTTGGGAAAATAT TGCAGATCTCGCGGAGAAATCGAACACCGAAGAACGAGCCCGCAAGGCAG CGACCTCAGGCGGCAACGGCACGGATGGTGACGGCAACGGTACGGGCGGT GATGGCAACGGCACGGGCGGCAACGGCACCTCTGGAGGCACCCAGGGCGC TTCTTCTGCCAACCCCCAGCTTGCGGCTATGGCCGATATGGGAATCTTTG CCCCTCTACCAGCCGAAGCTGGAAGCGCACCGTCGGAGGAGACACCACGG CAGGAAGCAGAGAGAGCGGTGGAAACCTGGAGGAATGCAGTGATTCCGAC CGAGTTTGCGGCGGCCTTGCGAGGAATCGATGTGTGTTTCTTTTGGAAGA AGCACGGCGACACGATCTGCCCCCAACTGAAGCCCGTCGCGCAGTCCATT CTTGGGCTCCCGCCTGCATCAGCTGTGCTCGAGCGAGACTTCTGCATCGC AGACGGTTTTAAGACGAGGAAGCGGTCTTGTGTCGGCCCCGCTTACCTCG AGATGATGCTGTTCTCTCGCGCAAACTACCACCTCATTCCCAACCGCATC CCTGAGCTGGATGCATCCCAGATGAAGGCAGCGATCCCCGTGCGTCTGAC TGACCCTTCGAAGCTGGGACAGGTGGCACAACTCGATGTCTTGCCGGAGG CGGGGGGGGGCGGATCCGACTCGGACACGGACTAGATTCCGACCGAGTTT GCGGCGGCCTTGCGAGGAATCGATGTGTGTTTCTTTTGGAAGAAGCACGG CGACACGATCTGCCCCCAACTGAAGCCCGTCGCGCAGTCCATTCTTGGGC TCCCGCCTGCATCAGCTGTGCTCGAGCGAGACTTCTGCATCGCAGACGGT TTTAAGACGAGGAAGCGGTCTTGTGTCGGCCCCGCTTACCTCGAGATGAT GCTGTTCTCTCGCGCAAACTACCACCTCATTCCCAACCGCATCCCTGAGC TGGATGCATCCCAGATGAAGGCAGCGATCCCCGTGCGTCTGACTGACCCT TCGAAGCTGGGACAGGTGGCACAACTCGATGTCTTGCCGGAGGCGGGGGG GGGCGGATCCGACTCGGACACGGACTAG back to top
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