mRNA_L-elsbetiae_contig828.17287.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig828.17287.1 vs. uniprot
Match: D8LTQ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTQ7_ECTSI) HSP 1 Score: 344 bits (882), Expect = 1.570e-108 Identity = 296/511 (57.93%), Postives = 332/511 (64.97%), Query Frame = 2 Query: 248 QVATSKYIKEEKIAILTVLLDVGMELWEMEKQINKPWRNLYWEQRVALPVRERLKKHAGYVEHGIDIDAKFGGPAAVENLRRWVRSQRTQELERVEGERQRVPGSPPGRPLSEVQKLRAKVFQEIAAATFDKDGGDGVAD-------GDTEAVAXXXXXXXXXXXXXXXXXXXXVQGGRDAGLVPFASLF-PSSSNGGASSAALSPXXXXXXXXXXXXXXAAPIHGGISA-GSANNIIGAGSDPSSFLRQQYQLHAPSTSATITTPNIPNGVANKPVLPRPSAAAGTGPTHCSIPAPLVNSIDAGGAGXXXXXXXXADPFIAATGTRRSVSETTPEDFRLGGAGLASG-------GXXXXXSQGLPXXXXXXXXKDHTELVGRVMAQIDSLNIPLAATTLLVQSLQAKIANTPGTAGKGKGASSGAA----VGGT---VKEEWKARGGAGLSLEERQLLLEERLQASREAESAQALAERRLKLMEEMRAAGNHQVVTDEVLQKQRLVVLGL 1711 +V + KYIKEEKIAIL+VLL+VGMELWEMEK INKPWR L+WEQRVALPVRE+LK +A Y E G D+D +F G VENLR+WVRSQRTQELERVEGERQR+PGSPPGRPLSEVQ+LRA+VF+EI AA+ +KDG +GV + GDT+AVAXXXXXXXXXXXXXXXXXX Q GRD PF +LF P NGG+S+ XXXXXXXXXXX AA ISA G + +++ AG ++ APSTSA XXXXXXXX R+ SETTPEDFRLG G G XXXXX XXXX DHT+LV RVMAQI +LN+PLAAT LLVQSLQAKI + T G G A+ AA +GG + E ARGGA SLEERQLLLEERLQASREAESAQALAERRLKLMEEMRAAGN QVVTDEVLQ QR VVLGL Sbjct: 52 KVTSCKYIKEEKIAILSVLLEVGMELWEMEKSINKPWRMLFWEQRVALPVREKLKSNARYAEMGHDVDLRFSGSFGVENLRKWVRSQRTQELERVEGERQRMPGSPPGRPLSEVQQLRARVFEEITAASLEKDG-EGVGEVPRAVGSGDTQAVAXXXXXXXXXXXXXXXXXXA-TQAGRDPSPEPFGALFAPPGQNGGSSAXXXXXXXXXXXXXXXXKAPAA-----ISAPGLSTSVVVAGGAGAAD-------GAPSTSAGXXXXXXXXXX------------------------------------XXXXXXXXXXXXXXXVSRPRTASETTPEDFRLGSGGAVRGYSTAVAXXXXXXXXXXXXXXXXKRKKVDHTDLVNRVMAQISTLNLPLAATALLVQSLQAKIGSPNFTRGGGSAAAIAAAGVEALGGNGNLAQGERGARGGAS-SLEERQLLLEERLQASREAESAQALAERRLKLMEEMRAAGNDQVVTDEVLQNQRRVVLGL 511 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig828.17287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig828.17287.1 >prot_L-elsbetiae_contig828.17287.1 ID=prot_L-elsbetiae_contig828.17287.1|Name=mRNA_L-elsbetiae_contig828.17287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=466bp MELWEMEKQINKPWRNLYWEQRVALPVRERLKKHAGYVEHGIDIDAKFGGback to top mRNA from alignment at L-elsbetiae_contig828:21051..25738- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig828.17287.1 ID=mRNA_L-elsbetiae_contig828.17287.1|Name=mRNA_L-elsbetiae_contig828.17287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4688bp|location=Sequence derived from alignment at L-elsbetiae_contig828:21051..25738- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig828:21051..25738- >mRNA_L-elsbetiae_contig828.17287.1 ID=mRNA_L-elsbetiae_contig828.17287.1|Name=mRNA_L-elsbetiae_contig828.17287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2796bp|location=Sequence derived from alignment at L-elsbetiae_contig828:21051..25738- (Laminarionema elsbetiae ELsaHSoW15)back to top |