mRNA_L-elsbetiae_contig8278.17281.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8278.17281.1
Unique NamemRNA_L-elsbetiae_contig8278.17281.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8278.17281.1 vs. uniprot
Match: D7G0D9_ECTSI (IPT/TIG domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D9_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 5.260e-72
Identity = 121/166 (72.89%), Postives = 138/166 (83.13%), Query Frame = 1 
Query:  151 KVTLGALASIAPTSRDTCMDGDGTSLTLLADVVRTEIGAFLTSSAGCVVIDYPFRPDPPYVAISAPSAVGYCDDLTLEGIATFASIGSTNITWEVTVVGGDLSADLSNVTRTLGEASTAHHLTVAIPSEFLEQESTFSFVLRVDTILGGSSEAMVEVYKSSLELLV 648
            +VTLG L++IAP+S + C DGDGTSLTLLA VVRTEIGAFLTSSA CVV++YP  PDPP+V ISAP AVGYCDDLTLEG AT  SIGS+N+TWEV + G D + DLSNV+R L EAS+   LTV IPSE L  E+TFSFVLRVDT+LGGSSEA+VEVYKSSL LLV
Sbjct:  171 QVTLGVLSTIAPSSSEGCTDGDGTSLTLLAGVVRTEIGAFLTSSAACVVVNYPANPDPPFVDISAPGAVGYCDDLTLEGSATMPSIGSSNVTWEVALAGSDPTVDLSNVSRVLEEASSNKELTVTIPSEHLAVENTFSFVLRVDTVLGGSSEAVVEVYKSSLGLLV 336
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BLAST of mRNA_L-elsbetiae_contig8278.17281.1 vs. uniprot
Match: D7G0D8_ECTSI (REJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D8_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.310e-43
Identity = 82/115 (71.30%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:  151 KVTLGALASIAPTSRDTCMDGDGTSLTLLADVVRTEIGAFLTSSAGCVVIDYPFRPDPPYVAISAPSAVGYCDDLTLEGIATFASIGSTNITWEVTVVGGDLSADLSNVTRTLGE 495
            +VTLG L+SI P+S D C DGDGTSLTLLA VVRTEIGAFLT+SAGCVV+D+P  PDPPYV +SAPSA+GYCDDLTLEG AT  SIG+TN+TWEV + G    AD+ NVTR L E
Sbjct:  131 QVTLGVLSSIVPSSSDACTDGDGTSLTLLAGVVRTEIGAFLTTSAGCVVVDFPATPDPPYVTVSAPSAIGYCDDLTLEGSATSTSIGTTNVTWEVALAGNGQFADIFNVTRHLEE 245
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BLAST of mRNA_L-elsbetiae_contig8278.17281.1 vs. uniprot
Match: A0A6H5JCS7_9PHAE (REJ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.820e-14
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 1 
Query:  259 IGAFLTSSAGCVVIDYPFRPDPPYVAISAPSAVGYCDDLTLEGIATFASIGSTNITWEVTVVG----GDLSADLSNVTR--TLGEASTAHHLTVAIPSEFLEQESTFSFVLRVDTILGGSSEAMVEVYKSS 633
            I AFL+S  GCV +     P+ P V ISAP  VG C +L LEG+A++ S GS+   W V           S  L N     T  + + A    V +PS  L++ ST+ F LRV++ LG S EA +EV+KS+
Sbjct:   13 IEAFLSSEPGCVAVGPALNPNEPVVEISAPKVVGCCSNLVLEGVASYPSTGSSRA-WVVVYCNVAELAVFSRPLLNTVHLVTSRQRAAAKDFVVTLPSTSLDEGSTYIFGLRVESALGVSGEASIEVFKSA 142
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BLAST of mRNA_L-elsbetiae_contig8278.17281.1 vs. uniprot
Match: C1MP01_MICPC (Filamin like protein n=5 Tax=Micromonas pusilla TaxID=38833 RepID=C1MP01_MICPC)

HSP 1 Score: 55.8 bits (133), Expect = 1.760e-5
Identity = 44/146 (30.14%), Postives = 69/146 (47.26%), Query Frame = 1 
Query:   58 DAVP--CDLMFSSASVSKLGTGHTCQFTSGSRLKVTLGALASIAPTSRDTCMDGDGTSLTLLADVVRTEIGAFLTSSAGCVVIDYPFRPDPPYVAISAPSAVGYCDDLTLEGIATFASIGSTNITWEVTVVGGDLSADLSNVTRTL 489
            DA P  C  + ++A+ + +GTG TC +     L V  G  A++AP      M G      ++AD   +  GA      G   +  P    PP  +ISAPSAVG CD++  + ++  +  G   + +E  +V  D +AD+  V   L
Sbjct: 3424 DAAPRACAAVLTTATTTAVGTGATCAWADDKTLSVYFGPDATLAPGDHVVLMPG------VIADASGSSHGA-----TGVTRLLAPSSITPPVASISAPSAVGPCDNIAFD-VSGSSGGGGRKLRYEFGIVANDATADVGVVVAAL 3557
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8278.17281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0D9_ECTSI5.260e-7272.89IPT/TIG domain-containing protein n=1 Tax=Ectocarp... [more]
D7G0D8_ECTSI1.310e-4371.30REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JCS7_9PHAE4.820e-1439.69REJ domain-containing protein n=1 Tax=Ectocarpus s... [more]
C1MP01_MICPC1.760e-530.14Filamin like protein n=5 Tax=Micromonas pusilla Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8278contigL-elsbetiae_contig8278:2475..3950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog4787.PITG_19640T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.REJ domain
EggNOG OGs2CZH5@1,2SACB@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size650
Cds size648
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8278.17281.1prot_L-elsbetiae_contig8278.17281.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8278 2475..3948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.0023344-CDS-L-elsbetiae_contig8278:2474..26271622816911.0023344-CDS-L-elsbetiae_contig8278:2474..2627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8278 2475..2627 +
1691683906.0276515-CDS-L-elsbetiae_contig8278:2474..26271691683906.0276515-CDS-L-elsbetiae_contig8278:2474..2627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8278 2475..2627 +
1622816911.0137558-CDS-L-elsbetiae_contig8278:2963..30681622816911.0137558-CDS-L-elsbetiae_contig8278:2963..3068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8278 2964..3068 +
1691683906.040818-CDS-L-elsbetiae_contig8278:2963..30681691683906.040818-CDS-L-elsbetiae_contig8278:2963..3068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8278 2964..3068 +
1622816911.026239-CDS-L-elsbetiae_contig8278:3260..34111622816911.026239-CDS-L-elsbetiae_contig8278:3260..3411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8278 3261..3411 +
1691683906.0502417-CDS-L-elsbetiae_contig8278:3260..34111691683906.0502417-CDS-L-elsbetiae_contig8278:3260..3411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8278 3261..3411 +
1622816911.0361965-CDS-L-elsbetiae_contig8278:3528..36141622816911.0361965-CDS-L-elsbetiae_contig8278:3528..3614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8278 3529..3614 +
1691683906.061598-CDS-L-elsbetiae_contig8278:3528..36141691683906.061598-CDS-L-elsbetiae_contig8278:3528..3614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8278 3529..3614 +
1622816911.046049-CDS-L-elsbetiae_contig8278:3795..39481622816911.046049-CDS-L-elsbetiae_contig8278:3795..3948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8278 3796..3948 +
1691683906.070066-CDS-L-elsbetiae_contig8278:3795..39481691683906.070066-CDS-L-elsbetiae_contig8278:3795..3948Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8278 3796..3948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8278.17281.1

>prot_L-elsbetiae_contig8278.17281.1 ID=prot_L-elsbetiae_contig8278.17281.1|Name=mRNA_L-elsbetiae_contig8278.17281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=216bp
QVTVDFTGSSSSQEINGTFDAVPCDLMFSSASVSKLGTGHTCQFTSGSRL
KVTLGALASIAPTSRDTCMDGDGTSLTLLADVVRTEIGAFLTSSAGCVVI
DYPFRPDPPYVAISAPSAVGYCDDLTLEGIATFASIGSTNITWEVTVVGG
DLSADLSNVTRTLGEASTAHHLTVAIPSEFLEQESTFSFVLRVDTILGGS
SEAMVEVYKSSLELLV
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mRNA from alignment at L-elsbetiae_contig8278:2475..3950+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8278.17281.1 ID=mRNA_L-elsbetiae_contig8278.17281.1|Name=mRNA_L-elsbetiae_contig8278.17281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1476bp|location=Sequence derived from alignment at L-elsbetiae_contig8278:2475..3950+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGACGGTTGACTTCACCGGCAGCTCCTCGTCCCAGGAAATCAATGG
CACGTTCGATGCGGTGCCGTGCGACTTAATGTTCTCCTCGGCTTCGGTGT
CGAAGCTCGGTACCGGACATACCTGCCAGTTCACGTCTGGCTCCAGGTTA
AAGGTGCAAAACCGGAAATAAGAACGCCTCCCAAGCAATACTTGATTTTT
CAGTTAGCGGGATTCCAGCGATACGCTCCAGGCGCCCATCAGAGGCCACC
AGTAGAGTTTTGGTGATTCCATATTTCAGGTAGTCCCCGTACATGCACCG
ACGCGAAGGTGGAGATTGAAACATTGTTGATGCCCTAAGCGGGCCCGAGA
GCAGAGAATATAATATGGGCCACCTCTACCACACATGGTGTTGGAGGCTG
GTCTGGGATGAGCCCAGTACGACCTCAACAATTAAGACACCGGCATTCAC
CACACATGTCTGCTCTTCTGATTCACCCCCCTCAAAAAGGTGACGCTCGG
CGCCCTCGCGAGCATCGCTCCCACGTCGAGAGATACGTGCATGGACGGAG
ATGGAACATCATTGACGCTTTTGGCCGACGTAGTTCGAACCGAGGTTAGA
CTAGACAGTTCGTTATTGGTCACAAATCGGGTGATTTTTGATTCAGTAAA
GCACAGCACCGAGGGTTATGTGTAACATGAGCTGACGCCCCAGCGCACAG
ATCCGGTCACACTCAGGCTGTTCGAAATTCACTTGGCTTCCCACCGAAAT
GGACATGTTCACTTCGGTCGTCGAATTCCACGACAGATCGGAGCGTTCCT
GACGTCATCTGCCGGGTGCGTGGTCATCGACTACCCCTTCAGGCCTGACC
CGCCCTACGTGGCCATTAGCGCGCCCAGTGCCGTTGGATATTGCGACGAT
CTCACGCTGGAAGGGATCGCTACGTTTGCCTCCATAGGTACGGCGGGTGC
AGCTTAAGCGGTATCTGTGCGGCATGATTTCCATGCGAACGCGATTTGAA
GAAAACACGCCGATATATCGACCTTCCCACAACGTTGCTCGTTCTACACA
CCAGGTAGTACCAACATCACCTGGGAGGTAACGGTTGTAGGAGGTGATCT
CTCCGCCGACTTGTCGAACGTTACGAGGACATTGGGCGAGGTGAAGATAC
TACACGCGATTGCTTACGGAACCTGGATGTCAGCTGACGCCCCACGCGCG
CTGTTTTGTCGGTCATGCGAAGAGATGATATCACGAGTCACAACGTGCTG
TGACCTGAAACCATCGCCAATTTGGCCAGTTATCATCTCCGCTGTACGTG
TTTTCCATCTCCACACTTTAGGCTAGCACTGCACACCACCTGACGGTAGC
GATTCCGAGCGAATTTCTCGAACAGGAATCAACTTTTTCCTTCGTGCTTC
GGGTGGACACGATATTGGGAGGCTCGTCAGAGGCTATGGTGGAGGTGTAC
AAATCCTCTCTGGAGCTCCTTGTCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8278:2475..3950+

>mRNA_L-elsbetiae_contig8278.17281.1 ID=mRNA_L-elsbetiae_contig8278.17281.1|Name=mRNA_L-elsbetiae_contig8278.17281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig8278:2475..3950+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGACGGTTGACTTCACCGGCAGCTCCTCGTCCCAGGAAATCAATGG
CACGTTCGATGCGGTGCCGTGCGACTTAATGTTCTCCTCGGCTTCGGTGT
CGAAGCTCGGTACCGGACATACCTGCCAGTTCACGTCTGGCTCCAGGTTA
AAGCAGGTGACGGTTGACTTCACCGGCAGCTCCTCGTCCCAGGAAATCAA
TGGCACGTTCGATGCGGTGCCGTGCGACTTAATGTTCTCCTCGGCTTCGG
TGTCGAAGCTCGGTACCGGACATACCTGCCAGTTCACGTCTGGCTCCAGG
TTAAAGGTGACGCTCGGCGCCCTCGCGAGCATCGCTCCCACGTCGAGAGA
TACGTGCATGGACGGAGATGGAACATCATTGACGCTTTTGGCCGACGTAG
TTCGAACCGAGGTGACGCTCGGCGCCCTCGCGAGCATCGCTCCCACGTCG
AGAGATACGTGCATGGACGGAGATGGAACATCATTGACGCTTTTGGCCGA
CGTAGTTCGAACCGAGATCGGAGCGTTCCTGACGTCATCTGCCGGGTGCG
TGGTCATCGACTACCCCTTCAGGCCTGACCCGCCCTACGTGGCCATTAGC
GCGCCCAGTGCCGTTGGATATTGCGACGATCTCACGCTGGAAGGGATCGC
TACGTTTGCCTCCATAGATCGGAGCGTTCCTGACGTCATCTGCCGGGTGC
GTGGTCATCGACTACCCCTTCAGGCCTGACCCGCCCTACGTGGCCATTAG
CGCGCCCAGTGCCGTTGGATATTGCGACGATCTCACGCTGGAAGGGATCG
CTACGTTTGCCTCCATAGGTAGTACCAACATCACCTGGGAGGTAACGGTT
GTAGGAGGTGATCTCTCCGCCGACTTGTCGAACGTTACGAGGACATTGGG
CGAGGTAGTACCAACATCACCTGGGAGGTAACGGTTGTAGGAGGTGATCT
CTCCGCCGACTTGTCGAACGTTACGAGGACATTGGGCGAGGCTAGCACTG
CACACCACCTGACGGTAGCGATTCCGAGCGAATTTCTCGAACAGGAATCA
ACTTTTTCCTTCGTGCTTCGGGTGGACACGATATTGGGAGGCTCGTCAGA
GGCTATGGTGGAGGTGTACAAATCCTCTCTGGAGCTCCTTGTCGCTAGCA
CTGCACACCACCTGACGGTAGCGATTCCGAGCGAATTTCTCGAACAGGAA
TCAACTTTTTCCTTCGTGCTTCGGGTGGACACGATATTGGGAGGCTCGTC
AGAGGCTATGGTGGAGGTGTACAAATCCTCTCTGGAGCTCCTTGTC
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