mRNA_L-elsbetiae_contig8277.17279.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8277.17279.1
Unique NamemRNA_L-elsbetiae_contig8277.17279.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8277.17279.1 vs. uniprot
Match: D8LB83_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 6.000e-52
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 1 
Query:   19 QELDRESEKLLQCLEAVYSSDRVSEEVVMSVEETLRTAPEVQKMFLQVLRHASSR----SRGPTLLHGPSFETLARFSYTLLCVCVDRVDYSVAHTLLQLTGNYFQ 324
            +ELDR+SEKLLQCLEAVYSSDRVSEEVVM VEETLRT P VQKMFLQVLRHAS R    SRGPTLLHGPSFETLARFSYTLLCVCVDRVDYSVAHTLLQLTGNYFQ
Sbjct: 1697 EELDRDSEKLLQCLEAVYSSDRVSEEVVMDVEETLRTKPVVQKMFLQVLRHASQRGYASSRGPTLLHGPSFETLARFSYTLLCVCVDRVDYSVAHTLLQLTGNYFQ 1802
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BLAST of mRNA_L-elsbetiae_contig8277.17279.1 vs. uniprot
Match: A0A6H5KB05_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 6.000e-52
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 1 
Query:   19 QELDRESEKLLQCLEAVYSSDRVSEEVVMSVEETLRTAPEVQKMFLQVLRHASSR----SRGPTLLHGPSFETLARFSYTLLCVCVDRVDYSVAHTLLQLTGNYFQ 324
            +ELDR+SEKLLQCLEAVYSSDRVSEEVVM VEETLRT P VQKMFLQVLRHAS R    SRGPTLLHGPSFETLARFSYTLLCVCVDRVDYSVAHTLLQLTGNYFQ
Sbjct: 1748 EELDRDSEKLLQCLEAVYSSDRVSEEVVMDVEETLRTKPAVQKMFLQVLRHASRRGYASSRGPTLLHGPSFETLARFSYTLLCVCVDRVDYSVAHTLLQLTGNYFQ 1853
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8277.17279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB83_ECTSI6.000e-5290.57WD-40 repeat protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KB05_9PHAE6.000e-5290.57UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8277contigL-elsbetiae_contig8277:176..1912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue5.3e-45
Seed eggNOG ortholog2880.D8LB83
Preferred nameSCD1
KEGG koko:K03361,ko:K20164
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00407
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000278,GO:0000281,GO:0000819,GO:0000910,GO:0000911,GO:0001568,GO:0001570,GO:0001932,GO:0001934,GO:0001944,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007166,GO:0007176,GO:0007219,GO:0007275,GO:0008150,GO:0008152,GO:0008156,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009825,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010235,GO:0010374,GO:0010440,GO:0010468,GO:0010469,GO:0010498,GO:0010506,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010594,GO:0010604,GO:0010605,GO:0010632,GO:0010638,GO:0010646,GO:0010647,GO:0010721,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010948,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022603,GO:0023051,GO:0023052,GO:0023056,GO:0030135,GO:0030136,GO:0030154,GO:0030162,GO:0030163,GO:0030234,GO:0030323,GO:0030324,GO:0030332,GO:0030334,GO:0030674,GO:0031146,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031461,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032446,GO:0032501,GO:0032502,GO:0032506,GO:0032875,GO:0032876,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0033554,GO:0033674,GO:0034644,GO:0035239,GO:0035295,GO:0036211,GO:0040007,GO:0040012,GO:0042058,GO:0042176,GO:0042325,GO:0042327,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043525,GO:0043535,GO:0043549,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045670,GO:0045671,GO:0045732,GO:0045741,GO:0045742,GO:0045765,GO:0045786,GO:0045824,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045937,GO:0048471,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050731,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050816,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051093,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051222,GO:0051223,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051270,GO:0051276,GO:0051301,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051716,GO:0051726,GO:0055106,GO:0060090,GO:0060255,GO:0060284,GO:0060341,GO:0060541,GO:0061097,GO:0061098,GO:0061136,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070372,GO:0070374,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090049,GO:0090087,GO:0090316,GO:0090329,GO:0090558,GO:0097027,GO:0097708,GO:0098772,GO:0098813,GO:0104004,GO:0140096,GO:0140110,GO:1900407,GO:1900409,GO:1901184,GO:1901186,GO:1901214,GO:1901216,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902105,GO:1902106,GO:1902175,GO:1902177,GO:1902410,GO:1902494,GO:1902531,GO:1902533,GO:1902882,GO:1902884,GO:1903010,GO:1903011,GO:1903025,GO:1903026,GO:1903047,GO:1903050,GO:1903052,GO:1903146,GO:1903201,GO:1903203,GO:1903209,GO:1903214,GO:1903223,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903376,GO:1903378,GO:1903506,GO:1903533,GO:1903670,GO:1903706,GO:1903707,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904951,GO:1990234,GO:1990452,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000145,GO:2000273,GO:2000677,GO:2000678,GO:2001141,GO:2001204,GO:2001205,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG0274@1,KOG0274@2759,KOG2127@1,KOG2127@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121,ko04131
Exons3
Model size326
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8277.17279.1prot_L-elsbetiae_contig8277.17279.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8277 178..1912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.9452233-CDS-L-elsbetiae_contig8277:177..3421622816910.9452233-CDS-L-elsbetiae_contig8277:177..342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8277 178..342 -
1691683905.996136-CDS-L-elsbetiae_contig8277:177..3421691683905.996136-CDS-L-elsbetiae_contig8277:177..342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8277 178..342 -
1622816910.9561455-CDS-L-elsbetiae_contig8277:1050..11551622816910.9561455-CDS-L-elsbetiae_contig8277:1050..1155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8277 1051..1155 -
1691683906.0080233-CDS-L-elsbetiae_contig8277:1050..11551691683906.0080233-CDS-L-elsbetiae_contig8277:1050..1155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8277 1051..1155 -
1622816910.9671345-CDS-L-elsbetiae_contig8277:1858..19121622816910.9671345-CDS-L-elsbetiae_contig8277:1858..1912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8277 1859..1912 -
1691683906.0174387-CDS-L-elsbetiae_contig8277:1858..19121691683906.0174387-CDS-L-elsbetiae_contig8277:1858..1912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8277 1859..1912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8277.17279.1

>prot_L-elsbetiae_contig8277.17279.1 ID=prot_L-elsbetiae_contig8277.17279.1|Name=mRNA_L-elsbetiae_contig8277.17279.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
AGAGDGQELDRESEKLLQCLEAVYSSDRVSEEVVMSVEETLRTAPEVQKM
FLQVLRHASSRSRGPTLLHGPSFETLARFSYTLLCVCVDRVDYSVAHTLL
QLTGNYFQ
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mRNA from alignment at L-elsbetiae_contig8277:176..1912-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8277.17279.1 ID=mRNA_L-elsbetiae_contig8277.17279.1|Name=mRNA_L-elsbetiae_contig8277.17279.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1737bp|location=Sequence derived from alignment at L-elsbetiae_contig8277:176..1912- (Laminarionema elsbetiae ELsaHSoW15)
GCAGGGGCCGGGGACGGGCAGGAGCTCGACAGAGAGAGCGAGAAACTGTT
GCAGGTATGTATGTTTGCGATTAAGCTGCTGCTGCTGCTGCTGCTGCTGT
TCGCTGCTGCGGCTGCTGCTGGCTGCTGCGGCTGTGGCTGCGGTTGCTGC
TGCTGCTGTTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCACGGTCGAT
GATTGATTCTGCGCATGTTTTTTGCTCTCGGCAATTAAACGTCGCGTGCT
TTTTGGTTGGGTGCGACTGCTGCTGTCTGTGCAGCGGGTCGGGCGGCGGT
TGGCAGAGCGCTCGCTGTGCGTTTCGTCGTGCTGGCATGGCTTCATTCAT
GCCCGTGGGTTCAGATGGAGAGTCATGATGTAGAACACTACAGCCGTCCT
TGATCATTTCATGAAAAATCGACTAAATTAACCCGGGAATGTTCAGACCC
GCCGTGGATGTGGCGGAGGTGAGGGAGGTTATGTACCATAGTCTTGTGAG
CAGGTATGTAGGTGCGTTGGTCGAAGGTGTTCGAGGTATTGTAGCGAACG
GTGGCACACGAGGGCTGCGCACGCGAGTCGTGTCGAAGGCAGCACGAAAC
AAACTTGTATATAGAAAACGAACGGTTACACGCTTCTTTGGTGGGTTTGT
TGTGCTTTAAACGTGTCGCGGTTGTCCCTTCCCCTTTTTGTTGTGCTCTC
TTCCCTCCGCCCTTTTTGTCCTTGGGTGGGTTCATTCAATCGATGCCACT
GTTTCAGTGCCTGGAGGCGGTGTACTCGTCGGACAGAGTGTCTGAGGAGG
TGGTGATGAGCGTGGAAGAGACGCTGAGGACCGCACCTGAGGTGCAAAAA
ATGTTCTTGCAGGTGAGAGAGAGAGAGACAGCAGTGTGCAGATGCAAAAA
CTTGTACATCTGTATGTACAAGTATGTAGTATGTATGTATGTGAGTTTGA
ACATAGTTACTTTCAATACATCCGATTATGTTTTTCCGATTACCTTTTTG
TCAAGCACGATACTTGTATGCTCCGTTTTCGCCAGTTTGAAGACCGGAGA
CAAAGGAGAAACGTCCTCCTTTGATGGCACCTACCCTGTCTATTTGTTGC
ACGGGCGGGGTAGTGCGCGGAGGACGCAAGGTGCCCGGTTGTTGCTTTCA
TGCCGTGTTGCCTCCTGTGCTCCTTTGTACGGGTGTGTGCCCCCCCAACA
TCCTTCCCTTCGCCTTTCTCTCTCTCGTCAGTTTTTCTTTGTTTATGGAG
ACGTTTTCTGGAAACAACAAGCTCTCTCCCAGCCCTTGGGCTTTCGTTTC
ATCACCTTGTTGTTTTTACACGGTATAAATCCGAAGAAAAAACGTTGCCT
CGATGCGATCTGACGACAACGGTACACACTCTGTGATGATGCGGGCCGCC
AACAGCAGTTACTTCTACACTACAAGGTGCTACGCCACGCCAGCTCGCGT
GCACGCCGGCGCACCTGCCCTTCCGTTTAATCTGAAAACCTTTTCGCCCC
GGTAAGTTATAAGTTATCGTACAACTTGATCAACAAAACGGTAACTGTTA
CAACTACTGTTATGCTGCAGGTGCTGCGACACGCCAGCTCGCGTAGCCGC
GGGCCTACCCTCCTCCACGGCCCATCGTTCGAGACCTTGGCGCGCTTCAG
CTACACCCTCCTGTGCGTCTGCGTCGATCGCGTCGACTACTCGGTTGCAC
ACACGCTCCTGCAGCTCACGGGCAACTATTTCCAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8277:176..1912-

>mRNA_L-elsbetiae_contig8277.17279.1 ID=mRNA_L-elsbetiae_contig8277.17279.1|Name=mRNA_L-elsbetiae_contig8277.17279.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig8277:176..1912- (Laminarionema elsbetiae ELsaHSoW15)
GCAGGGGCCGGGGACGGGCAGGAGCTCGACAGAGAGAGCGAGAAACTGTT
GCAGGCAGGGGCCGGGGACGGGCAGGAGCTCGACAGAGAGAGCGAGAAAC
TGTTGCAGTGCCTGGAGGCGGTGTACTCGTCGGACAGAGTGTCTGAGGAG
GTGGTGATGAGCGTGGAAGAGACGCTGAGGACCGCACCTGAGGTGCAAAA
AATGTTCTTGCAGTGCCTGGAGGCGGTGTACTCGTCGGACAGAGTGTCTG
AGGAGGTGGTGATGAGCGTGGAAGAGACGCTGAGGACCGCACCTGAGGTG
CAAAAAATGTTCTTGCAGGTGCTGCGACACGCCAGCTCGCGTAGCCGCGG
GCCTACCCTCCTCCACGGCCCATCGTTCGAGACCTTGGCGCGCTTCAGCT
ACACCCTCCTGTGCGTCTGCGTCGATCGCGTCGACTACTCGGTTGCACAC
ACGCTCCTGCAGCTCACGGGCAACTATTTCCAGGTGCTGCGACACGCCAG
CTCGCGTAGCCGCGGGCCTACCCTCCTCCACGGCCCATCGTTCGAGACCT
TGGCGCGCTTCAGCTACACCCTCCTGTGCGTCTGCGTCGATCGCGTCGAC
TACTCGGTTGCACACACGCTCCTGCAGCTCACGGGCAACTATTTCCAG
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