mRNA_L-elsbetiae_contig8256.17260.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8256.17260.1
Unique NamemRNA_L-elsbetiae_contig8256.17260.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8256.17260.1 vs. uniprot
Match: A0A6H5JP54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP54_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.430e-13
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  250 LAFHRMGVRQRNAPPSPPLMSALPPKRPRSPADDHDPSHGKRPRSG 387
            LAFHRMGVRQRN+PPSPPL+SALPPKRPR+P DD  P HGKRPR+G
Sbjct:  500 LAFHRMGVRQRNSPPSPPLVSALPPKRPRTPGDD--PGHGKRPRNG 543
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BLAST of mRNA_L-elsbetiae_contig8256.17260.1 vs. uniprot
Match: D7FH94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH94_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.050e-11
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:  265 MGVRQRNAPPSPPLMSALPPKRPRSPADDHDPSHGKRPRSG 387
            MGVRQRN+PPSPPL+SALPPKRPR+P DD  P HGKRPR+G
Sbjct:    1 MGVRQRNSPPSPPLVSALPPKRPRTPGDD--PGHGKRPRNG 39
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8256.17260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP54_9PHAE2.430e-1382.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH94_ECTSI1.050e-1180.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8256contigL-elsbetiae_contig8256:1596..3846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_004530.1
Exons3
Model size390
Cds size390
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8256.17260.1prot_L-elsbetiae_contig8256.17260.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8256 1596..3846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.1267796-CDS-L-elsbetiae_contig8256:1595..18021622816909.1267796-CDS-L-elsbetiae_contig8256:1595..1802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8256 1596..1802 +
1691683904.5013537-CDS-L-elsbetiae_contig8256:1595..18021691683904.5013537-CDS-L-elsbetiae_contig8256:1595..1802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8256 1596..1802 +
1622816909.1375751-CDS-L-elsbetiae_contig8256:1877..19491622816909.1375751-CDS-L-elsbetiae_contig8256:1877..1949Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8256 1878..1949 +
1691683904.5130048-CDS-L-elsbetiae_contig8256:1877..19491691683904.5130048-CDS-L-elsbetiae_contig8256:1877..1949Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8256 1878..1949 +
1622816909.1517391-CDS-L-elsbetiae_contig8256:3735..38461622816909.1517391-CDS-L-elsbetiae_contig8256:3735..3846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8256 3736..3846 +
1691683904.5234582-CDS-L-elsbetiae_contig8256:3735..38461691683904.5234582-CDS-L-elsbetiae_contig8256:3735..3846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8256 3736..3846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8256.17260.1

>prot_L-elsbetiae_contig8256.17260.1 ID=prot_L-elsbetiae_contig8256.17260.1|Name=mRNA_L-elsbetiae_contig8256.17260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
PHLPVAKRQRYHLEGGSGGGSSGSGGGGGSGGSRRERESHRQVLLLDQQR
QQQQQQQQQHHQQQQQQQQQKARRQEEQELQLQLAFHRMGVRQRNAPPSP
PLMSALPPKRPRSPADDHDPSHGKRPRSG*
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mRNA from alignment at L-elsbetiae_contig8256:1596..3846+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8256.17260.1 ID=mRNA_L-elsbetiae_contig8256.17260.1|Name=mRNA_L-elsbetiae_contig8256.17260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2251bp|location=Sequence derived from alignment at L-elsbetiae_contig8256:1596..3846+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCACCTCCCCGTGGCCAAGCGCCAGCGGTACCACCTAGAAGGCGGAAG
CGGCGGCGGGAGCAGCGGAAGCGGTGGCGGCGGCGGGAGCGGCGGCAGCA
GGAGGGAGAGGGAGTCGCACCGCCAGGTTTTGCTCCTGGACCAACAGCGC
CAGCAGCAGCAGCAGCAGCAGCAGCAACACCACCAGCAGCAGCAGCAGCA
GCAGCAGGTGCAGCAGCAGCAGCAGGTGCAGCAGCAGCAGCAGCAACAGC
AGGACTGTCAGCGGGACTGTCAGGAGGAAGAGCAGAAGGCCAGGCGGCAG
GAAGAGCAGGAGCTGCAGCTGCAGCTGGCCTTTCACCGGATGGGCGTGCG
GCAGGTGCGGATGATCTCACGGGGTCCCTCGTGTCTACGGTATACTTTTT
TGGGTGCCCGTGCAAGATTACGGTAGGCAGGTGACACCAGAACAAGATAC
CACACCCGCTGGGCCGATTTTTAATAGAGCTCCATTAGTCTGTAGCGAAC
ACGGTGATGCCAGCACTAAACAGCACCTTTTCGGACAGCCCTCGACTAGA
TCTTTCCTACACCGCCACTCCCTTTCGGCACTAGCACTCTTCTTGCTGGG
GAGGAATCGAGCTTCGAAAATCTATCCATGGGGTGTGGTATCTTGTGTCA
CCTACGGTACCTAGCTAGGCGCTATTTATTTGATGCGTCTTTTCCGGGTC
GTTTGCGTTTGTCTTGGGCTTTGTGCTCTGTTTATTTATGGGCTACGGCC
AAAACAAGGTACACCTTGTACTTGTCCGGCCAAAATAAGGTATTATATGT
GGTATCGAACATAAACGTGCCTCGCACCTACTAAAGCCCTCGGATAGAAT
CTCGGAGGCTGTCCCATGGCCGCCATCAAAGTAGGGCACAACCCGTGCAC
AACGTCAATGGATGTCTACATAAATACTATCTACATACACATGCTCGAGG
GTGGTGTAGACGCTCCGCCGTGCAACTACGCACGGCTGCAATGACCCTCG
TTTGTACAACGGTAGTGTGACCGAGGGGCTACCCAGTTGGCTTATTGGGG
TAGGATAAGTAGCGCATTTGGTTTAGATCCGGCATGATGAGAAAATGTAA
GCAGGAAGGGCACTTTTCTCGTGGGTCAGTAGGGCACTAAGGCCCTGGTC
CCCGACGATGAACCCCGCGGTTTCCGGCCAAAAGAGGATGGACGAGCGGC
AAAACAAGGTGTAGCTGGAAGCTGAGTAGCCACGCGAAGGTGTACCGTGT
ACCTCTTCGGCCAAAAGAAGATGCTTGGTAGGAATTTTCACTTGAACCCG
AAGTAGGACACCTTGTTTTGGCCGGAAAAGTACAAGGTGTACCTTGTTTT
GGCCGCTGCCCTTTATTTATGCGTCTTTTCGGATCGTTAGCATAGGCTTT
TTCAGAATTGGGGGCCCTGCTGCAGGAATCCTAGGTTTTCAAAGCTCAAG
AGTAATATACCGTAGGTGACACAAGATACCACACCCCCTGGACATATTTT
CAAAGCTTGATTCCTCCCCAGCAAGAAGAGTGTCAGTGCCGAAATGGGTG
GCGTTGGAAAGATCTAGTCGAGCGCTGTCCGAAAAAACGTCGTTTAGTGC
TGGCACCCTCTTCGTTACGGAGTTATGGAGCTCTAAAATTCAGTCCAGGG
GGTGTGGTATCTTGTGCCACCTACGGTATATTACTCTTGAGCTTTGAAAA
CCTGTCCAGCAGAGGGGTGGGGGTGGTATCTTGTGTCACCTACGGTACGG
TACATATATTTGGTGGTGTCGGTACCGTGTATTTCTATGACACAAGATGA
CACACCCCCTGGACCGGTTTTCAAAGGTCGGTTACTCCGCAACGGGTATG
ATAATAACACCACTTGATCATATCATTCCAACACTGCCCTTTTCGGGGCT
GTGGAGTATATTACTCTTGAGCTTTGAAAACCGCCGCAAGATAGATGACC
ACGGGAATAATCGACCGCATCAAGTGTTGGACTACATAGTACGGACATTG
AGAGGTATACTGGATGGACAGATCGGAACGGTTTTTAATGCGAAGACAAT
ATACATACATACATACATACATCCAATTATAAAACATTTTTTTTTTATCT
TGTTCCTTTTTTTTTGTCCCTTTTTTTTTGTTTTTTTCAGAGGAATGCGC
CGCCAAGCCCACCGCTGATGTCCGCGCTGCCTCCCAAGCGTCCACGATCC
CCGGCAGACGACCACGACCCGTCCCATGGAAAGCGTCCACGAAGCGGATG
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8256:1596..3846+

>mRNA_L-elsbetiae_contig8256.17260.1 ID=mRNA_L-elsbetiae_contig8256.17260.1|Name=mRNA_L-elsbetiae_contig8256.17260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig8256:1596..3846+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCACCTCCCCGTGGCCAAGCGCCAGCGGTACCACCTAGAAGGCGGAAG
CGGCGGCGGGAGCAGCGGAAGCGGTGGCGGCGGCGGGAGCGGCGGCAGCA
GGAGGGAGAGGGAGTCGCACCGCCAGGTTTTGCTCCTGGACCAACAGCGC
CAGCAGCAGCAGCAGCAGCAGCAGCAACACCACCAGCAGCAGCAGCAGCA
GCAGCAGCCTCACCTCCCCGTGGCCAAGCGCCAGCGGTACCACCTAGAAG
GCGGAAGCGGCGGCGGGAGCAGCGGAAGCGGTGGCGGCGGCGGGAGCGGC
GGCAGCAGGAGGGAGAGGGAGTCGCACCGCCAGGTTTTGCTCCTGGACCA
ACAGCGCCAGCAGCAGCAGCAGCAGCAGCAGCAACACCACCAGCAGCAGC
AGCAGCAGCAGCAGCAGAAGGCCAGGCGGCAGGAAGAGCAGGAGCTGCAG
CTGCAGCTGGCCTTTCACCGGATGGGCGTGCGGCAGCAGAAGGCCAGGCG
GCAGGAAGAGCAGGAGCTGCAGCTGCAGCTGGCCTTTCACCGGATGGGCG
TGCGGCAGAGGAATGCGCCGCCAAGCCCACCGCTGATGTCCGCGCTGCCT
CCCAAGCGTCCACGATCCCCGGCAGACGACCACGACCCGTCCCATGGAAA
GCGTCCACGAAGCGGATGAAGGAATGCGCCGCCAAGCCCACCGCTGATGT
CCGCGCTGCCTCCCAAGCGTCCACGATCCCCGGCAGACGACCACGACCCG
TCCCATGGAAAGCGTCCACGAAGCGGATGA
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