mRNA_L-elsbetiae_contig8245.17251.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8245.17251.1
Unique NamemRNA_L-elsbetiae_contig8245.17251.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8245.17251.1 vs. uniprot
Match: D7FY49_ECTSI (Similar to collagen, partial n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY49_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 7.090e-13
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    4 PQAVADAAREAGTVLFAVGVGPGPDQGTLMAIAGDEANIFDVDNFNEL 147
            PQ  ADAAR  GT+L+AVGVG GP Q  L+AI GDEAN+FDVDNF EL
Sbjct:  186 PQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEEL 233
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BLAST of mRNA_L-elsbetiae_contig8245.17251.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.440e-13
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    4 PQAVADAAREAGTVLFAVGVGPGPDQGTLMAIAGDEANIFDVDNFNEL 147
            PQ  ADAAR  GT+L+AVGVG GP Q  L+AI GDEAN+FDVDNF EL
Sbjct:  203 PQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEEL 250
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BLAST of mRNA_L-elsbetiae_contig8245.17251.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 8.450e-13
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    4 PQAVADAAREAGTVLFAVGVGPGPDQGTLMAIAGDEANIFDVDNFNEL 147
            PQ  ADAAR  GT+L+AVGVG GP Q  L+AI GDEAN+FDVDNF EL
Sbjct:  193 PQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEEL 240
[Close]
BLAST of mRNA_L-elsbetiae_contig8245.17251.1 vs. uniprot
Match: A0A6H5JR61_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR61_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.350e-11
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 SPQAVADAAREAGTVLFAVGVGPGPDQGTLMAIAGDEANIFDVDNFNEL 147
            SPQ  ADAAR  GT+++AVGVG  P   TL+AI GDEAN+FDVDNF EL
Sbjct:  222 SPQDEADAARAEGTIMYAVGVGSVPTAETLLAIGGDEANVFDVDNFEEL 270
[Close]
BLAST of mRNA_L-elsbetiae_contig8245.17251.1 vs. uniprot
Match: D8LLU2_ECTSI (Similar to integrin alpha Hr1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU2_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.340e-11
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 SPQAVADAAREAGTVLFAVGVGPGPDQGTLMAIAGDEANIFDVDNFNEL 147
            SP+A ADAAR+ GT+++AVGVG GP Q  L+ I G+EAN+FDVD F+EL
Sbjct:  172 SPKAEADAARDEGTIVYAVGVGTGPTQEILLDIGGEEANVFDVDGFDEL 220
[Close]
BLAST of mRNA_L-elsbetiae_contig8245.17251.1 vs. uniprot
Match: D7G513_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G513_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.330e-9
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    4 PQAVADAAREAGTVLFAVGVGPGPDQGTLMAIAGDEANIFDVDNFNEL 147
            PQ  ADAAR+ GT+++AVGVGP   + TL++I GD  N+FD  NF EL
Sbjct:  185 PQIEADAARDEGTIVYAVGVGPDVSEATLLSIGGDLTNVFDASNFTEL 232
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8245.17251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FY49_ECTSI7.090e-1370.83Similar to collagen, partial n=2 Tax=Ectocarpus si... [more]
A0A6H5JRK3_9PHAE8.440e-1370.83VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FHN6_ECTSI8.450e-1370.83Glycin-rich protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JR61_9PHAE1.350e-1167.35VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LLU2_ECTSI2.340e-1163.27Similar to integrin alpha Hr1-like n=1 Tax=Ectocar... [more]
D7G513_ECTSI5.330e-956.25VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8245contigL-elsbetiae_contig8245:503..649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue7.3e-10
Seed eggNOG ortholog2880.D7FHN6
KEGG koko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.0168293-CDS-L-elsbetiae_contig8245:502..6491622816908.0168293-CDS-L-elsbetiae_contig8245:502..649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8245 503..649 +
1691683903.6429174-CDS-L-elsbetiae_contig8245:502..6491691683903.6429174-CDS-L-elsbetiae_contig8245:502..649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8245 503..649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8245.17251.1prot_L-elsbetiae_contig8245.17251.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8245 503..649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8245.17251.1

>prot_L-elsbetiae_contig8245.17251.1 ID=prot_L-elsbetiae_contig8245.17251.1|Name=mRNA_L-elsbetiae_contig8245.17251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=49bp
SPQAVADAAREAGTVLFAVGVGPGPDQGTLMAIAGDEANIFDVDNFNEL
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mRNA from alignment at L-elsbetiae_contig8245:503..649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8245.17251.1 ID=mRNA_L-elsbetiae_contig8245.17251.1|Name=mRNA_L-elsbetiae_contig8245.17251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=147bp|location=Sequence derived from alignment at L-elsbetiae_contig8245:503..649+ (Laminarionema elsbetiae ELsaHSoW15)
TCGCCTCAGGCTGTGGCAGACGCCGCCCGGGAGGCTGGCACCGTCCTCTT
CGCGGTGGGCGTTGGCCCGGGGCCGGACCAAGGCACGCTCATGGCCATTG
CAGGAGACGAGGCCAACATCTTCGACGTCGACAACTTCAACGAGTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8245:503..649+

>mRNA_L-elsbetiae_contig8245.17251.1 ID=mRNA_L-elsbetiae_contig8245.17251.1|Name=mRNA_L-elsbetiae_contig8245.17251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=294bp|location=Sequence derived from alignment at L-elsbetiae_contig8245:503..649+ (Laminarionema elsbetiae ELsaHSoW15)
TCGCCTCAGGCTGTGGCAGACGCCGCCCGGGAGGCTGGCACCGTCCTCTT
CGCGGTGGGCGTTGGCCCGGGGCCGGACCAAGGCACGCTCATGGCCATTG
CAGGAGACGAGGCCAACATCTTCGACGTCGACAACTTCAACGAGTTGTCG
CCTCAGGCTGTGGCAGACGCCGCCCGGGAGGCTGGCACCGTCCTCTTCGC
GGTGGGCGTTGGCCCGGGGCCGGACCAAGGCACGCTCATGGCCATTGCAG
GAGACGAGGCCAACATCTTCGACGTCGACAACTTCAACGAGTTG
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