mRNA_L-elsbetiae_contig824.17245.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig824.17245.1
Unique NamemRNA_L-elsbetiae_contig824.17245.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig824.17245.1 vs. uniprot
Match: D8LCJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 2.370e-14
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:  166 KKHRCWQFHLCGISNGETTVAHARSLESFRSIYTAAKRLTINPV----PCCR---------VETKPSPSHVPDNTKGGC--VVVEVQFSGPQSAERPAVLLNRLFQAERVAVYPVALRRGRK 486
            +K RCWQFH+ G+S  +T      +L +F   YTA   LT+ P     P  R          + K +     +++  G   VVVEV+FSGPQ A+RPA+LL  L + E VA +PV+LRRGR+
Sbjct:   22 RKQRCWQFHVSGVSISDTKAQQEAALATFTDTYTATTWLTVRPATPRGPVGRRKKYGTLDETDRKTTEKGDSESSSSGTRSVVVEVRFSGPQPADRPALLLRSLLKGESVAAHPVSLRRGRQ 143
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BLAST of mRNA_L-elsbetiae_contig824.17245.1 vs. uniprot
Match: A0A6H5JPU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.110e-6
Identity = 41/98 (41.84%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:  238 SLESFRSIYTAAKRLTINPVPCCRVETKPSPSHVPDNT------KGGC---------VVVEVQFSGPQSAERPAVLLNRLFQAERVAVYPVALRRGRK 486
            +L +F   YTA  RLT+ P        + + S + D T      KG           VVVEV+FSGPQ A+RPA+LL  L + E V V+PV+LRRGR+
Sbjct:    7 ALATFTDTYTATTRLTVRPASPRGPVGRRNKSGLIDETDSKTTTKGDSESNSSDTRSVVVEVRFSGPQPADRPALLLRSLLKGESVVVHPVSLRRGRQ 104
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig824.17245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCJ7_ECTSI2.370e-1440.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPU4_9PHAE1.110e-641.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig824contigL-elsbetiae_contig824:20942..24889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size915
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig824.17245.1prot_L-elsbetiae_contig824.17245.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig824 21032..24886 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.652767-UTR-L-elsbetiae_contig824:20941..210311622816907.652767-UTR-L-elsbetiae_contig824:20941..21031Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig824 20942..21031 +
1691683903.3722086-UTR-L-elsbetiae_contig824:20941..210311691683903.3722086-UTR-L-elsbetiae_contig824:20941..21031Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig824 20942..21031 +
1622816907.7012553-UTR-L-elsbetiae_contig824:24886..248891622816907.7012553-UTR-L-elsbetiae_contig824:24886..24889Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig824 24887..24889 +
1691683903.4308417-UTR-L-elsbetiae_contig824:24886..248891691683903.4308417-UTR-L-elsbetiae_contig824:24886..24889Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig824 24887..24889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.66792-CDS-L-elsbetiae_contig824:21031..211641622816907.66792-CDS-L-elsbetiae_contig824:21031..21164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig824 21032..21164 +
1691683903.3943565-CDS-L-elsbetiae_contig824:21031..211641691683903.3943565-CDS-L-elsbetiae_contig824:21031..21164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig824 21032..21164 +
1622816907.6781552-CDS-L-elsbetiae_contig824:22192..225341622816907.6781552-CDS-L-elsbetiae_contig824:22192..22534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig824 22193..22534 +
1691683903.4059417-CDS-L-elsbetiae_contig824:22192..225341691683903.4059417-CDS-L-elsbetiae_contig824:22192..22534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig824 22193..22534 +
1622816907.690888-CDS-L-elsbetiae_contig824:24539..248861622816907.690888-CDS-L-elsbetiae_contig824:24539..24886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig824 24540..24886 +
1691683903.4202163-CDS-L-elsbetiae_contig824:24539..248861691683903.4202163-CDS-L-elsbetiae_contig824:24539..24886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig824 24540..24886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig824.17245.1

>prot_L-elsbetiae_contig824.17245.1 ID=prot_L-elsbetiae_contig824.17245.1|Name=mRNA_L-elsbetiae_contig824.17245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=274bp
MCFCAYLSLSVPMTLPVAAASDPSKKKHRCWQFHLCGISNGETTVAHARS
LESFRSIYTAAKRLTINPVPCCRVETKPSPSHVPDNTKGGCVVVEVQFSG
PQSAERPAVLLNRLFQAERVAVYPVALRRGRKRSLGVIKEVPGDKTNSCA
STEVHGNSGDPIEASPAIDTTSGTNTSSDTMNYWRHAKRRSASGENLPSP
ASPRMEEEEEEEEEEDAEGGDIISDSVGNDNDDDNDDDIDYFWSFEEEDL
TAVGASCSNGIIGRSLLCGAWSR*
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mRNA from alignment at L-elsbetiae_contig824:20942..24889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig824.17245.1 ID=mRNA_L-elsbetiae_contig824.17245.1|Name=mRNA_L-elsbetiae_contig824.17245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3948bp|location=Sequence derived from alignment at L-elsbetiae_contig824:20942..24889+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTCTTTAGTAGTCTACGGGACTGCTCGACGTGACAGAGTCTCCGCGCA
TCACGGAAAGAGTGGCCGCCAAAGTGCTCAGAGCTGGTGCATGTGCTTCT
GCGCCTACCTCTCTCTCAGCGTGCCGATGACACTGCCAGTTGCTGCTGCT
TCGGATCCTTCTAAAAAGAAGCACCGATGCTGGCAATTCCATCTGTGTGG
CATCAGCAATGGCGAGACAACAGGTCAGAACTGCTACGCTTGTGTGCCTT
CGTCTCTCCCGCTCTGTCGCGTTGGACAGCAGGTACACAAAGTCTATAGA
CTAGGACCAGACAGAGTTGTTTGCCGGAAAAAAAAGGAAGTCCCCCCAAA
GTATACATCTACAATACATAGACTCTAGTCTGTGTATGTAGTGTGAGGGA
GAAGGGCAGTCTACACATACATATCGGACGACCCGCAGGGTGGGTCGTGC
AGGGTGTGAGTGTCCGAAGTTGTCTACATAATCTACAACTTTCAGCAGTG
TGCCAGAGAGGGCAACATTCATGTCGCGGTTTACCCCGCATTTCCACACC
GCGCGGCCGTGAAGATAGATCATACACACACAGTATACATACGTAGATGC
ACATACATTTCGTGGGTGTGCAGGTCGCCAGAACAAACAATGCAGTAGAC
GCTGTACAGCAGTACGTACAGCAGCAGTGCATATCTAGTAGTCTATCTAT
ATTTATAACCTACCTCTCTAGACTCTCGCCCCTCCCCTGCCTACTCTTTC
ACTTTGCCATCTGGTCCATATGTGGGAATTTACTTGCATCTTATGTTGTA
GGAGTAGACTATTTGATAAAAACAACGAATGAAATCCCGCATCATCTCCG
TCTGCCCAAAGTAGGAAATTGTTGTACACTTGAATTTATTATAGGATCTG
GATCTGCGTGTTTCAGAAACTGTCATGGTTGACGTACATACACACGTGCA
GGTATTGCAGCAGCAAGTTTTTTTGCGAAATGTGGTCAGTCGTGGACCCC
GTCAACCATTCGTCCTCATATATTACTTTCCGCCCCGCCGCAATCCATCC
GTTTTGGGGTAACCGCGTCTTAGCCGCTGCCTTCCAGCACACACCCTTTG
GCAATCCCCACACCGCGCGCCCTGCATATACATTTTGGCAACACCATAGA
TCGGCTGTTCTCCCCCTCTCGGCTGTTTCTCCCGCCAGCTGATCTCTTGT
GTGGCTTCCCTGCCCCTCCTGCGCGTTTGTCTCTTCGTCTGTTGTTTCCA
GTAGCCCACGCGCGTTCCTTAGAATCGTTCCGAAGCATCTATACGGCAGC
AAAACGGTTGACGATCAACCCAGTTCCTTGCTGTCGCGTTGAAACCAAAC
CGAGTCCTAGCCACGTCCCGGACAACACCAAGGGGGGTTGCGTAGTCGTC
GAGGTGCAGTTTTCCGGGCCTCAGTCAGCAGAACGGCCTGCGGTGCTTCT
GAATCGTCTGTTTCAAGCGGAAAGGGTCGCCGTGTACCCTGTTGCTCTGC
GGCGAGGGCGAAAGCGCTCTCTGGGGGTCATCAAGGAGGTGCCGGGCGAC
AAGACGAACAGCTGTGCTTCCACCGAGGTTCACGGAAACTCAGGTATTTT
GCATTACATGTAGTAATATCTTCTTCCTATTGTACCGGGTACGTTAGTTT
GGAGAATTGACGATACCAGCTCATATACGCTGAGATATGGTACTAAATAC
TGGTCTGTGTGTAGTTTGTATTTTGTGGAGGGATCATTTATTTTTTAGAT
CATTTTAGATATTTTTTAAGTCTCTTCGAGAGGTCATTTACTTTCTGGTG
TGTGCAGGGGACGAGAGCGCACAAAACTTTCTTTCGCGACAGTACGATAG
TAGCCGCACACAGAGCTGCCGTCTGCATGATAAACGCCAAGACCCAAGTA
AATAGTGGATGGTAAATAAAGTGTGCAGGAAAAGGTAAGGATACAACATC
GTGAGAGTTCGAGATTTGGCTGGCGCTGCACTGATGGTGCCTGACGGGTA
CAGACAGATGTTTTCCGCTCAAAGAAGGTGTGCGGTGTGAAAGTTGGGCA
AACAATAATCCAACAAGATAGGAGTAGATTGAAGTGAAGTGCCAGCCACT
AAATACACCGCAAGGTGTAGTACACGTCTCCACTTGGGGGGACTGTCGCC
AAAATAAATGGGAAGGACACACACACACACACAAAGTGCCAGCCAGGCCT
TGCTTTTTTTTCTTTTTTTGTCTGTTTGGCACTGGGATACATATATATGT
ACTGCTCATACGTTTTACGCGCCTTTTTGTTGTGTCACGGTCTAGTCCGC
ATTGTCACACAACCAACATACATAAGTCTACATACATATGCAGATGGATC
CCAATGGACTTGTGCGTGGCGCGTGCAGTGGTGTTCAGATGGAGGAGCTT
CGAAGCAAATCCAGCGGGGCGCCGAGAAAACTCTCCATACTTCCACATCT
ATCTATGTATGAGTCTTATCTAATAAAAGCGTAATTTGGAACTAAACGAG
ATGTTTGCCGGCAGTTGTTCCTTCCTGAGCTGCCCCCCTTTTCGGATGGC
TCTGTGTGATATTTCCATATGTTTCCAGTCCTTCTACAAGGCCTTATATG
CGATGATGAAAGCGTGTGCCATAATTTAGCGTGTACCACCTACATCAGTG
TGAAATTTCCATATGTTTCCAGTCCTTCTACAAGGCCTTATATGCGATGA
TGAAAGCGTGTGCCATAATTTAGCGTGTACCACCTACATCAGATAGACAT
TGACCAGAAAACAGAGCGAACGGCTTGCGTCGTTGGTGACTGACTGCCAA
GTGCTACAAATGGCGAGAGGCCGGAATGAGGAAGATCTGAAAGCAAGCGC
CTCCTCCGCGGCGGCTGTTACGGGCCTTGGCGATTATTTGCCGCCCCCCG
CCCTGCTCCTGCTTCTCCGGCTCCTACGTAGATACTATTACACCCCCGGA
GCCAGAGCATTATTTCACTCCGCACTCAGAAAACCAATTGACCACTATAA
TATCTACATTATTGCGCATAAATACTTCGTACATATTCAACACATGTGTG
GAATAATTTCCTCATTTTTGCATTTGCACTGACGCCCGTGGTACTGTGTG
AAGTGGAGTCATCGCCATCTCGGAGTGTTCAACTGCGGTACAATAGGCAA
ATCTCGTCTAAAATCTTGATATTATTGTTATCATTTGCCGTCCGACAATT
GCAGATGTACCCAACCAAAATTTATTCCAAACTGATGATGCTATTCTTAC
ATGCTCGAACACACTGCGTAGATTGCACAAACCGTCAACACTACCAAACA
ACATACCCAGCGTTTTAGATATTCTAAACCCACACCCACCCGCGAACCTT
CCCCGTTGCATGTACCCGACTGAAAAAAACACCTTCACCTTCTCCCGCTT
CCTTCAGCCTCTTCACCCCGTGCGCTCGTATCGGCCGTCTTTCTGAAACA
CGACATCCTGCGCTACTGCTATATGGTAGCCTTTTTGTCGTGGGCGCCGA
CAGTGCTAAGTATACCTACATAGAAGCCAACGCATGTACCAGAGTGTGAT
TTCTGGCCGGCCTGCCTGTTCGCCCGCCTTTTTGACAACGGTTAGCAGGA
GATCCGATCGAGGCATCACCCGCGATTGACACCACCTCCGGCACCAACAC
CAGCAGCGACACCATGAACTACTGGAGGCACGCCAAGAGGAGGTCGGCAT
CGGGAGAGAACCTCCCGAGCCCGGCGAGTCCACGAATGGAAGAGGAGGAG
GAGGAAGAAGAGGAGGAGGACGCAGAGGGCGGAGACATCATCAGCGACAG
CGTAGGGAATGACAACGACGACGACAATGACGACGATATCGATTACTTTT
GGAGCTTCGAGGAAGAAGACCTGACGGCCGTGGGGGCGTCCTGCAGCAAC
GGCATCATCGGCCGCAGCCTGCTCTGCGGAGCCTGGAGTAGGTGAGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig824:20942..24889+

>mRNA_L-elsbetiae_contig824.17245.1 ID=mRNA_L-elsbetiae_contig824.17245.1|Name=mRNA_L-elsbetiae_contig824.17245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1644bp|location=Sequence derived from alignment at L-elsbetiae_contig824:20942..24889+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCTTCTGCGCCTACCTCTCTCTCAGCGTGCCGATGACACTGCCAGT
TGCTGCTGCTTCGGATCCTTCTAAAAAGAAGCACCGATGCTGGCAATTCC
ATCTGTGTGGCATCAGCAATGGCGAGACAACAGATGTGCTTCTGCGCCTA
CCTCTCTCTCAGCGTGCCGATGACACTGCCAGTTGCTGCTGCTTCGGATC
CTTCTAAAAAGAAGCACCGATGCTGGCAATTCCATCTGTGTGGCATCAGC
AATGGCGAGACAACAGTAGCCCACGCGCGTTCCTTAGAATCGTTCCGAAG
CATCTATACGGCAGCAAAACGGTTGACGATCAACCCAGTTCCTTGCTGTC
GCGTTGAAACCAAACCGAGTCCTAGCCACGTCCCGGACAACACCAAGGGG
GGTTGCGTAGTCGTCGAGGTGCAGTTTTCCGGGCCTCAGTCAGCAGAACG
GCCTGCGGTGCTTCTGAATCGTCTGTTTCAAGCGGAAAGGGTCGCCGTGT
ACCCTGTTGCTCTGCGGCGAGGGCGAAAGCGCTCTCTGGGGGTCATCAAG
GAGGTGCCGGGCGACAAGACGAACAGCTGTGCTTCCACCGAGGTTCACGG
AAACTCAGTAGCCCACGCGCGTTCCTTAGAATCGTTCCGAAGCATCTATA
CGGCAGCAAAACGGTTGACGATCAACCCAGTTCCTTGCTGTCGCGTTGAA
ACCAAACCGAGTCCTAGCCACGTCCCGGACAACACCAAGGGGGGTTGCGT
AGTCGTCGAGGTGCAGTTTTCCGGGCCTCAGTCAGCAGAACGGCCTGCGG
TGCTTCTGAATCGTCTGTTTCAAGCGGAAAGGGTCGCCGTGTACCCTGTT
GCTCTGCGGCGAGGGCGAAAGCGCTCTCTGGGGGTCATCAAGGAGGTGCC
GGGCGACAAGACGAACAGCTGTGCTTCCACCGAGGTTCACGGAAACTCAG
GAGATCCGATCGAGGCATCACCCGCGATTGACACCACCTCCGGCACCAAC
ACCAGCAGCGACACCATGAACTACTGGAGGCACGCCAAGAGGAGGTCGGC
ATCGGGAGAGAACCTCCCGAGCCCGGCGAGTCCACGAATGGAAGAGGAGG
AGGAGGAAGAAGAGGAGGAGGACGCAGAGGGCGGAGACATCATCAGCGAC
AGCGTAGGGAATGACAACGACGACGACAATGACGACGATATCGATTACTT
TTGGAGCTTCGAGGAAGAAGACCTGACGGCCGTGGGGGCGTCCTGCAGCA
ACGGCATCATCGGCCGCAGCCTGCTCTGCGGAGCCTGGAGTAGGTGAGAG
ATCCGATCGAGGCATCACCCGCGATTGACACCACCTCCGGCACCAACACC
AGCAGCGACACCATGAACTACTGGAGGCACGCCAAGAGGAGGTCGGCATC
GGGAGAGAACCTCCCGAGCCCGGCGAGTCCACGAATGGAAGAGGAGGAGG
AGGAAGAAGAGGAGGAGGACGCAGAGGGCGGAGACATCATCAGCGACAGC
GTAGGGAATGACAACGACGACGACAATGACGACGATATCGATTACTTTTG
GAGCTTCGAGGAAGAAGACCTGACGGCCGTGGGGGCGTCCTGCAGCAACG
GCATCATCGGCCGCAGCCTGCTCTGCGGAGCCTGGAGTAGGTGA
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