mRNA_L-elsbetiae_contig8234.17239.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8234.17239.1
Unique NamemRNA_L-elsbetiae_contig8234.17239.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8234.17239.1 vs. uniprot
Match: D8LPW2_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.990e-13
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   10 LHCRTRNPLDPQKKYDEADPLFVRAIKIQEATLGPDHPELATSLNNRA 153
            +H R R  L+ Q KYDE DPL++RAI+I E TLGPDHP LATSLNNRA
Sbjct:   39 VHGRVRGLLESQGKYDEGDPLYLRAIEIGEKTLGPDHPALATSLNNRA 86
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BLAST of mRNA_L-elsbetiae_contig8234.17239.1 vs. uniprot
Match: D8LLM3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 4.440e-9
Identity = 26/39 (66.67%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   58 EADPLFVRAIKIQEATLGPDHPELATSLNNRAILLKAQG 174
            EADPL++RAI++ E  LGPDHP+LAT LNN+A+LL+ QG
Sbjct:   12 EADPLYLRAIEVGEKKLGPDHPDLATWLNNQAVLLRKQG 50
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BLAST of mRNA_L-elsbetiae_contig8234.17239.1 vs. uniprot
Match: A0A6H5KSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.860e-9
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   34 LDPQKKYDEADPLFVRAIKIQEATLGPDHPELATSLNNRAILLKAQ 171
            L+ Q K+ EADPL++RAI++ E  LG DHP+LATS+NNRA LL+AQ
Sbjct:  337 LEKQGKHAEADPLYLRAIEVAEKMLGRDHPDLATSINNRAELLRAQ 382
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BLAST of mRNA_L-elsbetiae_contig8234.17239.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 6.260e-9
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   52 YDEADPLFVRAIKIQEATLGPDHPELATSLNNRAILLKAQG 174
            +   DPLF+RAI+I E TLGPDHP+LAT LNNRA LL+AQG
Sbjct:  254 FTSQDPLFLRAIEIGEKTLGPDHPDLATRLNNRAELLRAQG 294
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BLAST of mRNA_L-elsbetiae_contig8234.17239.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 9.300e-9
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   34 LDPQKKYDEADPLFVRAIKIQEATLGPDHPELATSLNNRAILLKAQ 171
            L+   KY EADPL++RAI+I E TLGPDHP LAT LNNRA LL +Q
Sbjct:  609 LELMGKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRAGLLGSQ 654
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BLAST of mRNA_L-elsbetiae_contig8234.17239.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 57.4 bits (137), Expect = 2.190e-8
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   37 DPQKKYDEADPLFVRAIKIQEATLGPDHPELATSLNNRA 153
            + Q KY+EA+PL+ RA+KI+E  LGPDHP +AT+LNN A
Sbjct:    2 ESQGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLA 40
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BLAST of mRNA_L-elsbetiae_contig8234.17239.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.170e-8
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   43 QKKYDEADPLFVRAIKIQEATLGPDHPELATSLNNRAILLKAQ 171
            Q KYD A+PL+VR++ I+E   GPDHPE+ATSLNNRA  L+ Q
Sbjct:  395 QGKYDAAEPLYVRSLAIREKVYGPDHPEVATSLNNRAEFLRHQ 437
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BLAST of mRNA_L-elsbetiae_contig8234.17239.1 vs. uniprot
Match: D7FHK2_ECTSI (Peptidase-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK2_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 5.700e-8
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   49 KYDEADPLFVRAIKIQEATLGPDHPELATSLNNRAILLKAQ 171
            KY +ADP ++ AI+IQ+ TLGPDH +LAT+LN RA+LLK+Q
Sbjct:  134 KYAQADPAYLEAIEIQQQTLGPDHADLATTLNGRALLLKSQ 174
[Close]
BLAST of mRNA_L-elsbetiae_contig8234.17239.1 vs. uniprot
Match: A0A6H5L045_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L045_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.290e-7
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   49 KYDEADPLFVRAIKIQEATLGPDHPELATSLNNRAILLKAQ 171
            KY EADPL++RAI I +  LGPDHP+LA  LNNRA LLK Q
Sbjct:   11 KYAEADPLYLRAIDIGKKMLGPDHPDLAAWLNNRAGLLKKQ 51
[Close]
BLAST of mRNA_L-elsbetiae_contig8234.17239.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.560e-7
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   37 DPQKKYDEADPLFVRAIKIQEATLGPDHPELATSLNNRAILLKAQ 171
            D Q KY EA+PL+ R+  IQE  LG +HP++A+SLNNR  LL+AQ
Sbjct:   16 DIQGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQ 60
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8234.17239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPW2_ECTSI2.990e-1368.75TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLM3_ECTSI4.440e-966.67Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5KSC7_9PHAE5.860e-963.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUC1_9PHAE6.260e-970.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
D7G6W2_ECTSI9.300e-967.39NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
UPI0013D295282.190e-861.54tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
A0A6H5J9V8_9PHAE4.170e-862.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHK2_ECTSI5.700e-863.41Peptidase-like n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5L045_9PHAE2.290e-768.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3K8_9PHAE2.560e-757.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8234contigL-elsbetiae_contig8234:4237..5213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue7e-10
Seed eggNOG ortholog2880.D8LPW2
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons3
Model size411
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8234.17239.1prot_L-elsbetiae_contig8234.17239.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8234 4237..5213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.999192-CDS-L-elsbetiae_contig8234:4236..43501622816906.999192-CDS-L-elsbetiae_contig8234:4236..4350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8234 4237..4350 -
1691683902.9118998-CDS-L-elsbetiae_contig8234:4236..43501691683902.9118998-CDS-L-elsbetiae_contig8234:4236..4350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8234 4237..4350 -
1622816907.0102737-CDS-L-elsbetiae_contig8234:4584..47101622816907.0102737-CDS-L-elsbetiae_contig8234:4584..4710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8234 4585..4710 -
1691683902.9251306-CDS-L-elsbetiae_contig8234:4584..47101691683902.9251306-CDS-L-elsbetiae_contig8234:4584..4710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8234 4585..4710 -
1622816907.0199885-CDS-L-elsbetiae_contig8234:5042..52131622816907.0199885-CDS-L-elsbetiae_contig8234:5042..5213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8234 5043..5213 -
1691683902.933999-CDS-L-elsbetiae_contig8234:5042..52131691683902.933999-CDS-L-elsbetiae_contig8234:5042..5213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8234 5043..5213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8234.17239.1

>prot_L-elsbetiae_contig8234.17239.1 ID=prot_L-elsbetiae_contig8234.17239.1|Name=mRNA_L-elsbetiae_contig8234.17239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MISLHCRTRNPLDPQKKYDEADPLFVRAIKIQEATLGPDHPELATSLNNR
AILLKAQGKLDEADTSLERAIKIWEKAVGTDHPNVAKSLETRANLLQAQG
KLDEAEPLFERGFEIQEKALGRDHPSLADGLVSRAKL
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mRNA from alignment at L-elsbetiae_contig8234:4237..5213-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8234.17239.1 ID=mRNA_L-elsbetiae_contig8234.17239.1|Name=mRNA_L-elsbetiae_contig8234.17239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=977bp|location=Sequence derived from alignment at L-elsbetiae_contig8234:4237..5213- (Laminarionema elsbetiae ELsaHSoW15)
ATGATATCCTTGCACTGCCGCACACGCAACCCTCTGGACCCCCAGAAAAA
GTACGATGAGGCGGACCCCCTCTTCGTGAGAGCTATCAAGATTCAGGAGG
CAACTCTTGGCCCCGACCACCCAGAACTTGCTACAAGCCTCAACAACAGG
GCGATCCTCCTGAAAGCACAGGTTGGATATCTGTTTTATATGCTTTCCCC
TTAGATGGACGTTACACGTACCTGAGGGCAGACTCCGTCGCTACATCCAA
GATAATTATACATTCGCACCCTGATGTTGAACTCGTGAAACTGCGTCTTC
TTTTGTGTTTTGATATCAGCATCGTTTGGTATTATCAATGCAGAATAAGT
TGATATTGAATCGCGTAGTCCCCTTGTATTGCCGCATTCAAAACACTTGC
TTTATCTATAGGGCAACTTGGTGTTATCAATGCAGAATAAGTTGATATTG
GGTCGCGTTATCTCCTTGTAATGTCGCACTCAAAACACCTGCTTTATCTA
TAGGGTAAACTCGATGAAGCTGACACCTCCTTAGAGAGAGCTATCAAGAT
TTGGGAGAAAGCTGTTGGCACCGACCACCCGAATGTCGCCAAAAGCCTCG
AGACCCGGGCGAACCTCTTACAAGCACAGGTATGGGCGTCGTTCCAGGGA
GAGCGTACGATTGGTGGGCATGACCTGTATCTTCTGAACGTTTTATTCTA
CCTTTTTCATCAATTCTTCGAATGCTAGCGAGATTGCTCTGCTGATGTGG
CACTTCCTGTTGCTCTGATTGCGCAACTGTTGTGTACGTTTTGACATTGA
CATCGGTAAAAAAGTGATGGTGCTGGATTGCTTGATCTCTTGTTCTACAC
TCTTGCTTTTCAGGGCAAGCTCGATGAAGCGGAGCCTCTCTTCGAGAGGG
GTTTCGAGATCCAGGAGAAAGCTCTTGGTCGCGACCACCCTAGTCTCGCT
GATGGCCTCGTCAGCCGGGCAAAGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8234:4237..5213-

>mRNA_L-elsbetiae_contig8234.17239.1 ID=mRNA_L-elsbetiae_contig8234.17239.1|Name=mRNA_L-elsbetiae_contig8234.17239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig8234:4237..5213- (Laminarionema elsbetiae ELsaHSoW15)
ATGATATCCTTGCACTGCCGCACACGCAACCCTCTGGACCCCCAGAAAAA
GTACGATGAGGCGGACCCCCTCTTCGTGAGAGCTATCAAGATTCAGGAGG
CAACTCTTGGCCCCGACCACCCAGAACTTGCTACAAGCCTCAACAACAGG
GCGATCCTCCTGAAAGCACAGATGATATCCTTGCACTGCCGCACACGCAA
CCCTCTGGACCCCCAGAAAAAGTACGATGAGGCGGACCCCCTCTTCGTGA
GAGCTATCAAGATTCAGGAGGCAACTCTTGGCCCCGACCACCCAGAACTT
GCTACAAGCCTCAACAACAGGGCGATCCTCCTGAAAGCACAGGGTAAACT
CGATGAAGCTGACACCTCCTTAGAGAGAGCTATCAAGATTTGGGAGAAAG
CTGTTGGCACCGACCACCCGAATGTCGCCAAAAGCCTCGAGACCCGGGCG
AACCTCTTACAAGCACAGGGTAAACTCGATGAAGCTGACACCTCCTTAGA
GAGAGCTATCAAGATTTGGGAGAAAGCTGTTGGCACCGACCACCCGAATG
TCGCCAAAAGCCTCGAGACCCGGGCGAACCTCTTACAAGCACAGGGCAAG
CTCGATGAAGCGGAGCCTCTCTTCGAGAGGGGTTTCGAGATCCAGGAGAA
AGCTCTTGGTCGCGACCACCCTAGTCTCGCTGATGGCCTCGTCAGCCGGG
CAAAGCTCGGCAAGCTCGATGAAGCGGAGCCTCTCTTCGAGAGGGGTTTC
GAGATCCAGGAGAAAGCTCTTGGTCGCGACCACCCTAGTCTCGCTGATGG
CCTCGTCAGCCGGGCAAAGCTC
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