mRNA_L-elsbetiae_contig823.17231.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig823.17231.1
Unique NamemRNA_L-elsbetiae_contig823.17231.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig823.17231.1 vs. uniprot
Match: D7FNM5_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNM5_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 1.460e-65
Identity = 107/130 (82.31%), Postives = 116/130 (89.23%), Query Frame = 3 
Query:   24 ERVRLMNELFTRAQQRFAREAGSDERQFEMRVRKVLPLIPPIATKIGELRGDGEDSITEGAKAYLNELQEYRSRNFPSTEDQDREFLSYCLGDGRGKVDPRLADVVRYRLGRKESHSTAAGILEEFLTPA 413
            ERV LMNELF RAQQRFAREAG DER+FE+ VRKVLPL+PPIATKIGEL GDGED + +GA+ YL ELQ YRS NFPSTE+QDRE LSYCLG+GRGKVDPRLADVVRYRLGRKE+HSTAAGILEEF  PA
Sbjct:  289 ERVGLMNELFLRAQQRFAREAGGDERRFEIGVRKVLPLVPPIATKIGELMGDGEDGMIKGAELYLEELQAYRSENFPSTEEQDRELLSYCLGNGRGKVDPRLADVVRYRLGRKEAHSTAAGILEEFTAPA 418
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig823.17231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNM5_ECTSI1.460e-6582.31SET domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig823contigL-elsbetiae_contig823:10643..12430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue3.7e-52
Seed eggNOG ortholog2880.D7FNM5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-01_004930.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size653
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig823.17231.1prot_L-elsbetiae_contig823.17231.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig823 10681..12277 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.4188843-UTR-L-elsbetiae_contig823:10642..106801622816906.4188843-UTR-L-elsbetiae_contig823:10642..10680Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig823 10643..10680 +
1691683902.521948-UTR-L-elsbetiae_contig823:10642..106801691683902.521948-UTR-L-elsbetiae_contig823:10642..10680Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig823 10643..10680 +
1622816906.4656894-UTR-L-elsbetiae_contig823:12277..124301622816906.4656894-UTR-L-elsbetiae_contig823:12277..12430Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig823 12278..12430 +
1691683902.5670462-UTR-L-elsbetiae_contig823:12277..124301691683902.5670462-UTR-L-elsbetiae_contig823:12277..12430Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig823 12278..12430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.4287856-CDS-L-elsbetiae_contig823:10680..107581622816906.4287856-CDS-L-elsbetiae_contig823:10680..10758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 10681..10758 +
1691683902.5339384-CDS-L-elsbetiae_contig823:10680..107581691683902.5339384-CDS-L-elsbetiae_contig823:10680..10758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 10681..10758 +
1622816906.4387543-CDS-L-elsbetiae_contig823:11498..116681622816906.4387543-CDS-L-elsbetiae_contig823:11498..11668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 11499..11668 +
1691683902.5451243-CDS-L-elsbetiae_contig823:11498..116681691683902.5451243-CDS-L-elsbetiae_contig823:11498..11668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 11499..11668 +
1622816906.4498382-CDS-L-elsbetiae_contig823:12063..122771622816906.4498382-CDS-L-elsbetiae_contig823:12063..12277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 12064..12277 +
1691683902.5558417-CDS-L-elsbetiae_contig823:12063..122771691683902.5558417-CDS-L-elsbetiae_contig823:12063..12277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 12064..12277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig823.17231.1

>prot_L-elsbetiae_contig823.17231.1 ID=prot_L-elsbetiae_contig823.17231.1|Name=mRNA_L-elsbetiae_contig823.17231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MNELFTRAQQRFAREAGSDERQFEMRVRKVLPLIPPIATKIGELRGDGED
SITEGAKAYLNELQEYRSRNFPSTEDQDREFLSYCLGDGRGKVDPRLADV
VRYRLGRKESHSTAAGILEEFLTPASPTPPATKTPEQVKGGKDEGTSEEG
GGE*
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mRNA from alignment at L-elsbetiae_contig823:10643..12430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig823.17231.1 ID=mRNA_L-elsbetiae_contig823.17231.1|Name=mRNA_L-elsbetiae_contig823.17231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1788bp|location=Sequence derived from alignment at L-elsbetiae_contig823:10643..12430+ (Laminarionema elsbetiae ELsaHSoW15)
GGGACTCGGAAGAGTGGGGGGGGGAAAGGGTCCGCTTGATGAACGAGCTG
TTTACGCGCGCGCAGCAGCGGTTCGCGAGGGAGGCCGGTAGCGACGAACG
GCAGTTTGAGATGCGCGTGAGTCTTTGGTCGTGTGCGAGGGGGTCTGGTC
GTGTCCTGCGTGGGGTGTGGTTCTGTCCCTGGAACGGGGAAGAAGGAATT
AGTGCGGGGCGTGCGTGTCTCTACATGATGGACAGAACGTTACTGCAGAC
ATTTTTCATGGTGTTTCGTTCTCACTGCTGCGACCGAAGCTACATAAAGT
CAAAATCCTCTTTGCTTCCCAATCAAAATCCTCCTTGGATTTCCACCCAG
TGGACGCAAAAATGTCCGCTCTTTGTAGTGTATGTGTTCCTCGAAGCGCA
ACGACTTGCTCTTTGCTAGAGAACTCTTTGCTGCAGAACTCGTCGCCTAG
ATCCCCCACGGGGCAGCAACGACATGGGGGGCAAATCTGGTCATTTGTCC
AGGCCCCCGTTGGTGTCAATCACGACCGTCGCATTCGTTTCTTGTATTTT
TTGTCGTTTCCTTTTGGCTCTGGGTAGACTGGCAAAAAATAACATTCGCT
GATACCAAAAACAATATTCCTCATCTTTCTTTTTTTCTCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTCTTCCCCT
CCCGCCCCCTCTGTTCCCCGTCCCNNNNNNNNNNGCAAAAAAAAAAAAAC
CTATACCCCCAAAAAAAAAATATTTTTCCTTTTTTTTTTTTTTCCCCCCC
CCCCCCCCCCCCCCTCTCTCTCTCTCTCTTCGTGTCGTGCATGTTTGGAT
CCAAAGGTCCGAAAGGTGCTCCCTCTTATTCCTCCGATCGCGACGAAGAT
CGGAGAGCTCAGGGGAGACGGGGAGGACTCTATCACCGAGGGCGCTAAGG
CGTACCTAAACGAGTTGCAGGAGTACCGGTCGCGGAATTTCCCGTCGACC
GAAGACCAGGACAGAGAGTTTTTGAGGTGAGCGCGAGAAGACCTCGAGTT
GTTTTTGTTTTTGCAGGTGCTGGTGGCGGTACAAGTGCCGGTTTGCTGCG
GTTATCTTGCTCTTTTCTGTGTCAAGATGATCAAGAGGCGGGCGCAACTT
GTGGCGCCCACGCACGCACCCCACCTGTTCGGTGCCCGCTACAACCGGCG
GTGGTTTGAAACCAAAACAACTGGTCTGGGGGTCGCTTATAAAGCTGCCT
TTTTCAATCCCTGCCCAAGGTCCTCCCCAGTCCCCGCCGCTCTCTTTCCT
TTCTTTTTCGTTCTTCCTCCGACTTTTGCGCTGATCTCTCTCCCCCCCCC
CTCGCTTTGTCGAAAACAATCATCGAACGCTTCGAACACTTTTTTGTTCA
ACATTTGCAACTCGGGTACAGCTACTGCCTGGGCGACGGCAGAGGGAAGG
TAGACCCTCGCTTGGCCGACGTCGTGCGGTACCGCCTCGGCAGAAAAGAG
TCGCACTCCACAGCAGCGGGCATCCTCGAGGAGTTTTTGACGCCGGCATC
ACCAACGCCACCGGCGACGAAAACACCAGAGCAGGTGAAGGGCGGCAAGG
ACGAGGGCACCAGCGAAGAGGGCGGGGGTGAATAAGGCAAAGTCGCCCGC
GGCGATAGGAATGCCGGAGGAACATATTCTCAAGGCGGGTGTCGGCCAAT
ATTACGCGCAGCAGAGCGCCAGCCGAGGCCGCTGACACCCGTGTTGAGGA
GGGAAATAGTCGACGAGGGTAAGAGGGCGACGAGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig823:10643..12430+

>mRNA_L-elsbetiae_contig823.17231.1 ID=mRNA_L-elsbetiae_contig823.17231.1|Name=mRNA_L-elsbetiae_contig823.17231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig823:10643..12430+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGAGCTGTTTACGCGCGCGCAGCAGCGGTTCGCGAGGGAGGCCGG
TAGCGACGAACGGCAGTTTGAGATGCGCATGAACGAGCTGTTTACGCGCG
CGCAGCAGCGGTTCGCGAGGGAGGCCGGTAGCGACGAACGGCAGTTTGAG
ATGCGCGTCCGAAAGGTGCTCCCTCTTATTCCTCCGATCGCGACGAAGAT
CGGAGAGCTCAGGGGAGACGGGGAGGACTCTATCACCGAGGGCGCTAAGG
CGTACCTAAACGAGTTGCAGGAGTACCGGTCGCGGAATTTCCCGTCGACC
GAAGACCAGGACAGAGAGTTTTTGAGGTCCGAAAGGTGCTCCCTCTTATT
CCTCCGATCGCGACGAAGATCGGAGAGCTCAGGGGAGACGGGGAGGACTC
TATCACCGAGGGCGCTAAGGCGTACCTAAACGAGTTGCAGGAGTACCGGT
CGCGGAATTTCCCGTCGACCGAAGACCAGGACAGAGAGTTTTTGAGCTAC
TGCCTGGGCGACGGCAGAGGGAAGGTAGACCCTCGCTTGGCCGACGTCGT
GCGGTACCGCCTCGGCAGAAAAGAGTCGCACTCCACAGCAGCGGGCATCC
TCGAGGAGTTTTTGACGCCGGCATCACCAACGCCACCGGCGACGAAAACA
CCAGAGCAGGTGAAGGGCGGCAAGGACGAGGGCACCAGCGAAGAGGGCGG
GGGTGAATAACTACTGCCTGGGCGACGGCAGAGGGAAGGTAGACCCTCGC
TTGGCCGACGTCGTGCGGTACCGCCTCGGCAGAAAAGAGTCGCACTCCAC
AGCAGCGGGCATCCTCGAGGAGTTTTTGACGCCGGCATCACCAACGCCAC
CGGCGACGAAAACACCAGAGCAGGTGAAGGGCGGCAAGGACGAGGGCACC
AGCGAAGAGGGCGGGGGTGAATAA
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