mRNA_L-elsbetiae_contig8225.17230.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8225.17230.1
Unique NamemRNA_L-elsbetiae_contig8225.17230.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8225.17230.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.610e-9
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:  166 SILTGIDSEQLQVAGSPPTTYSSVQDYLQFMSHPYAYATNLELIAAQHIYGLEFRINYHG 345
            SI  GI SE +Q+AG P  TY +V +YLQ MS P AYAT++E+ AAQ +Y L  R+   G
Sbjct:  215 SIFVGIISENIQIAGQPQQTYQNVPEYLQLMSVPTAYATHVEIAAAQQLYNLNIRVTLVG 274
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8225.17230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCU2_9PHAE1.610e-951.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8225contigL-elsbetiae_contig8225:8238..8582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.3832266-CDS-L-elsbetiae_contig8225:8237..85821622816906.3832266-CDS-L-elsbetiae_contig8225:8237..8582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8225 8238..8582 -
1691683902.5086188-CDS-L-elsbetiae_contig8225:8237..85821691683902.5086188-CDS-L-elsbetiae_contig8225:8237..8582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8225 8238..8582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8225.17230.1prot_L-elsbetiae_contig8225.17230.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8225 8238..8582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8225.17230.1

>prot_L-elsbetiae_contig8225.17230.1 ID=prot_L-elsbetiae_contig8225.17230.1|Name=mRNA_L-elsbetiae_contig8225.17230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
IIPEIGDGACLLRCISRRVHNTPDMHRTVRAAIISHMSVNLHTIIPGSGF
STFYDSILTGIDSEQLQVAGSPPTTYSSVQDYLQFMSHPYAYATNLELIA
AQHIYGLEFRINYHG
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mRNA from alignment at L-elsbetiae_contig8225:8238..8582-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8225.17230.1 ID=mRNA_L-elsbetiae_contig8225.17230.1|Name=mRNA_L-elsbetiae_contig8225.17230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=345bp|location=Sequence derived from alignment at L-elsbetiae_contig8225:8238..8582- (Laminarionema elsbetiae ELsaHSoW15)
ATTATTCCCGAGATCGGTGATGGAGCGTGCTTACTAAGATGCATCTCGCG
GCGGGTCCACAACACACCTGATATGCACCGTACAGTCCGAGCAGCCATTA
TTTCTCACATGTCCGTCAACTTGCACACCATCATCCCCGGATCAGGGTTC
AGCACCTTCTACGACTCCATATTAACGGGAATTGACAGTGAACAACTGCA
AGTCGCTGGTTCCCCTCCCACAACATACTCCAGTGTTCAGGATTACCTTC
AGTTCATGTCCCACCCTTACGCATACGCCACAAATCTCGAGTTAATTGCT
GCACAGCATATATACGGATTAGAGTTTCGCATAAACTATCACGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8225:8238..8582-

>mRNA_L-elsbetiae_contig8225.17230.1 ID=mRNA_L-elsbetiae_contig8225.17230.1|Name=mRNA_L-elsbetiae_contig8225.17230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig8225:8238..8582- (Laminarionema elsbetiae ELsaHSoW15)
ATTATTCCCGAGATCGGTGATGGAGCGTGCTTACTAAGATGCATCTCGCG
GCGGGTCCACAACACACCTGATATGCACCGTACAGTCCGAGCAGCCATTA
TTTCTCACATGTCCGTCAACTTGCACACCATCATCCCCGGATCAGGGTTC
AGCACCTTCTACGACTCCATATTAACGGGAATTGACAGTGAACAACTGCA
AGTCGCTGGTTCCCCTCCCACAACATACTCCAGTGTTCAGGATTACCTTC
AGTTCATGTCCCACCCTTACGCATACGCCACAAATCTCGAGTTAATTGCT
GCACAGCATATATACGGATTAGAGTTTCGCATAAACTATCACGGTATTAT
TCCCGAGATCGGTGATGGAGCGTGCTTACTAAGATGCATCTCGCGGCGGG
TCCACAACACACCTGATATGCACCGTACAGTCCGAGCAGCCATTATTTCT
CACATGTCCGTCAACTTGCACACCATCATCCCCGGATCAGGGTTCAGCAC
CTTCTACGACTCCATATTAACGGGAATTGACAGTGAACAACTGCAAGTCG
CTGGTTCCCCTCCCACAACATACTCCAGTGTTCAGGATTACCTTCAGTTC
ATGTCCCACCCTTACGCATACGCCACAAATCTCGAGTTAATTGCTGCACA
GCATATATACGGATTAGAGTTTCGCATAAACTATCACGGT
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