mRNA_L-elsbetiae_contig8221.17227.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8221.17227.1
Unique NamemRNA_L-elsbetiae_contig8221.17227.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8221.17227.1 vs. uniprot
Match: D8LR94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR94_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.980e-27
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   19 LEILHSIPNRVAPRRQAGREHPVVMVVRELWPVLLAVSAKHQSSGQVLEKLCRFFKHAMRTCREHFEPLLK 231
            L+ L  + +R  P  QAGREHPVVMVVRELWPVL AVSAKHQSSGQV EKL RFFKHAMRTC+EHFEPLL+
Sbjct:  685 LDRLTVVVSRANPVMQAGREHPVVMVVRELWPVLEAVSAKHQSSGQVFEKLSRFFKHAMRTCKEHFEPLLR 755
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BLAST of mRNA_L-elsbetiae_contig8221.17227.1 vs. uniprot
Match: A0A8J2SEP9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEP9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.610e-14
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:   19 LEILHSIPNRVAPRRQA--GREHPVVMVVRELWPVLLAVSAKHQSSGQVLEKLCRFFKHAMRTCREHFEPLL 228
            L+ L ++    +P  Q   GR HPV+ V   LWPV  AVS K ++S  V+EKLCR +KHAMR+CR+HFEP+L
Sbjct:  658 LDRLTAVMRCASPSSQLLNGRPHPVLEVFANLWPVFEAVSIKMKTSHLVIEKLCRCYKHAMRSCRKHFEPML 729
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BLAST of mRNA_L-elsbetiae_contig8221.17227.1 vs. uniprot
Match: A0A7S3NIA9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIA9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.230e-12
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   67 AGREHPVVMVVRELWPVLLAVSAKHQSSGQVLEKLCRFFKHAMRTCREHFEPLLK 231
            A R HPV+  + +LWPV  AV+ ++  S Q++E+LCR +KHAMR+CR  FEP+L+
Sbjct:  819 ANRRHPVLSFIEKLWPVFEAVAERYGDSPQLIERLCRCYKHAMRSCRTQFEPMLE 873
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BLAST of mRNA_L-elsbetiae_contig8221.17227.1 vs. uniprot
Match: F0Y5X0_AURAN (Xpo1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5X0_AURAN)

HSP 1 Score: 59.7 bits (143), Expect = 1.280e-8
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   70 GREHPVVMVVRELWPVLLAVSAKHQSSGQVL--EKLCRFFKHAMRTCREHFEPLL 228
             R HPV+ +  +LWPV  A+ AK++ S  V+  EKLCR +KHAMR+CR+ F P+L
Sbjct:  694 SRPHPVLELFDKLWPVFEALGAKYRESTVVVVVEKLCRCYKHAMRSCRKAFAPML 748
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BLAST of mRNA_L-elsbetiae_contig8221.17227.1 vs. uniprot
Match: A0A7S3L1F1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1F1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 9.730e-7
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   37 IPNRVAPRRQAGREHPVVMVVRELWPVLLAVSAKHQSSGQVLEKLCRFFKHAMRTC-REHFEPLLK 231
            +PNRV         HP+V +++ LW VL   S K  +  QV EK+CR +KH++R+C +E + PLL+
Sbjct:   89 MPNRV------DGSHPIVAMLQSLWAVLDQASKKFANDTQVAEKICRLYKHSLRSCSKEAYMPLLQ 148
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BLAST of mRNA_L-elsbetiae_contig8221.17227.1 vs. uniprot
Match: A0A4D9CYX3_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYX3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.590e-6
Identity = 32/70 (45.71%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:   46 RVAPRRQAGRE-------HPVVMVVRELWPVLLAVSAKHQSSGQVLEKLCRFFKHAMRTCREH--FEPLL 228
            R+  RR  GRE        P V  V+ L PVL A+  +++    V+EKLCRFFKHA RT R    F PLL
Sbjct:  782 RLMGRRGGGREGEREGGTSPAVGAVQSLLPVLQAIYDEYKGKPDVMEKLCRFFKHAFRTARPKTAFYPLL 851
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8221.17227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LR94_ECTSI1.980e-2777.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2SEP9_9STRA6.610e-1451.39Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NIA9_9STRA5.230e-1250.91Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0Y5X0_AURAN1.280e-850.91Xpo1 domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S3L1F1_9STRA9.730e-740.91Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A4D9CYX3_9STRA3.590e-645.71Importin N-terminal domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8221contigL-elsbetiae_contig8221:8580..8810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.7e-23
Seed eggNOG ortholog2880.D8LR94
KEGG rclassRC00017
KEGG koko:K05288,ko:K15436
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2081@1,KOG2081@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03016
Exons1
Model size231
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.1582527-CDS-L-elsbetiae_contig8221:8579..87981622816906.1582527-CDS-L-elsbetiae_contig8221:8579..8798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8221 8580..8798 -
1691683902.3298337-CDS-L-elsbetiae_contig8221:8579..87981691683902.3298337-CDS-L-elsbetiae_contig8221:8579..8798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8221 8580..8798 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.1738787-UTR-L-elsbetiae_contig8221:8798..88101622816906.1738787-UTR-L-elsbetiae_contig8221:8798..8810Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8221 8799..8810 -
1691683902.3467371-UTR-L-elsbetiae_contig8221:8798..88101691683902.3467371-UTR-L-elsbetiae_contig8221:8798..8810Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8221 8799..8810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8221.17227.1prot_L-elsbetiae_contig8221.17227.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8221 8580..8798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8221.17227.1

>prot_L-elsbetiae_contig8221.17227.1 ID=prot_L-elsbetiae_contig8221.17227.1|Name=mRNA_L-elsbetiae_contig8221.17227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MFLEILHSIPNRVAPRRQAGREHPVVMVVRELWPVLLAVSAKHQSSGQVL
EKLCRFFKHAMRTCREHFEPLLK
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mRNA from alignment at L-elsbetiae_contig8221:8580..8810-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8221.17227.1 ID=mRNA_L-elsbetiae_contig8221.17227.1|Name=mRNA_L-elsbetiae_contig8221.17227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=231bp|location=Sequence derived from alignment at L-elsbetiae_contig8221:8580..8810- (Laminarionema elsbetiae ELsaHSoW15)
CTTAACTTCTCTATGTTTTTAGAGATCTTACATTCCATTCCAAACCGCGT
GGCCCCCCGGCGGCAGGCGGGGCGAGAACACCCCGTTGTCATGGTGGTGA
GAGAGCTGTGGCCGGTCCTCCTGGCCGTGTCGGCGAAGCACCAGTCGAGC
GGGCAGGTGCTGGAGAAGCTCTGCCGTTTCTTCAAGCACGCCATGCGCAC
CTGCAGGGAGCACTTCGAGCCTCTGCTCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8221:8580..8810-

>mRNA_L-elsbetiae_contig8221.17227.1 ID=mRNA_L-elsbetiae_contig8221.17227.1|Name=mRNA_L-elsbetiae_contig8221.17227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig8221:8580..8810- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTTAGAGATCTTACATTCCATTCCAAACCGCGTGGCCCCCCGGCG
GCAGGCGGGGCGAGAACACCCCGTTGTCATGGTGGTGAGAGAGCTGTGGC
CGGTCCTCCTGGCCGTGTCGGCGAAGCACCAGTCGAGCGGGCAGGTGCTG
GAGAAGCTCTGCCGTTTCTTCAAGCACGCCATGCGCACCTGCAGGGAGCA
CTTCGAGCCTCTGCTCAAGATGTTTTTAGAGATCTTACATTCCATTCCAA
ACCGCGTGGCCCCCCGGCGGCAGGCGGGGCGAGAACACCCCGTTGTCATG
GTGGTGAGAGAGCTGTGGCCGGTCCTCCTGGCCGTGTCGGCGAAGCACCA
GTCGAGCGGGCAGGTGCTGGAGAAGCTCTGCCGTTTCTTCAAGCACGCCA
TGCGCACCTGCAGGGAGCACTTCGAGCCTCTGCTCAAG
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