mRNA_L-elsbetiae_contig8216.17221.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8216.17221.1
Unique NamemRNA_L-elsbetiae_contig8216.17221.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8216.17221.1 vs. uniprot
Match: A0A6H5LIE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIE2_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.300e-22
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 KGIEEGEAEGFVVVARDDKPEEGGEAGDSVDNDNSSTSGISNNIMVIVFCALAFVANGGFLVYVFWVM 204
            KGIEEGEA GFVVVA D +PE  G+ G+++DNDN+ST+GISNN+MVIVFCALAFVANGGFLVYVFWVM
Sbjct:  196 KGIEEGEAGGFVVVAPDSEPEHRGQ-GENIDNDNASTNGISNNVMVIVFCALAFVANGGFLVYVFWVM 262
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BLAST of mRNA_L-elsbetiae_contig8216.17221.1 vs. uniprot
Match: D7FR44_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR44_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 4.980e-19
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 KGIEEGEAEGFVVVARDDKPEEGGEAGDSVDNDNSSTSGISNNIMVIVFCALAFVANGGFLVYVFWV 201
            KGIEEGEA GFVVVA D +P++  + G++VDNDN+ST+GISNN+MVIVFCALAFVANGGFLVYVFWV
Sbjct:   62 KGIEEGEAGGFVVVAPDSEPKQR-DQGENVDNDNASTNGISNNVMVIVFCALAFVANGGFLVYVFWV 127
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8216.17221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LIE2_9PHAE5.300e-2279.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR44_ECTSI4.980e-1977.61EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8216contigL-elsbetiae_contig8216:3377..5739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_003550.1
Exons2
Model size1205
Cds size207
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8216.17221.1prot_L-elsbetiae_contig8216.17221.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8216 4373..5739 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816905.649776-UTR-L-elsbetiae_contig8216:3376..43721622816905.649776-UTR-L-elsbetiae_contig8216:3376..4372Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8216 3377..4372 -
1691683901.9845662-UTR-L-elsbetiae_contig8216:3376..43721691683901.9845662-UTR-L-elsbetiae_contig8216:3376..4372Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8216 3377..4372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816905.6679685-CDS-L-elsbetiae_contig8216:4372..45221622816905.6679685-CDS-L-elsbetiae_contig8216:4372..4522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8216 4373..4522 -
1691683901.9942663-CDS-L-elsbetiae_contig8216:4372..45221691683901.9942663-CDS-L-elsbetiae_contig8216:4372..4522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8216 4373..4522 -
1622816905.6806748-CDS-L-elsbetiae_contig8216:5682..57391622816905.6806748-CDS-L-elsbetiae_contig8216:5682..5739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8216 5683..5739 -
1691683902.0032406-CDS-L-elsbetiae_contig8216:5682..57391691683902.0032406-CDS-L-elsbetiae_contig8216:5682..5739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8216 5683..5739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8216.17221.1

>prot_L-elsbetiae_contig8216.17221.1 ID=prot_L-elsbetiae_contig8216.17221.1|Name=mRNA_L-elsbetiae_contig8216.17221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
KGIEEGEAEGFVVVARDDKPEEGGEAGDSVDNDNSSTSGISNNIMVIVFC
ALAFVANGGFLVYVFWVM*
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mRNA from alignment at L-elsbetiae_contig8216:3377..5739-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8216.17221.1 ID=mRNA_L-elsbetiae_contig8216.17221.1|Name=mRNA_L-elsbetiae_contig8216.17221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2363bp|location=Sequence derived from alignment at L-elsbetiae_contig8216:3377..5739- (Laminarionema elsbetiae ELsaHSoW15)
AAGGGAATCGAGGAGGGGGAAGCGGAAGGTTTTGTGGTGGTGGCGCGGGA
TGACAAGGTGAGGGGAGGGAGGGCGGGTATTTCGTCGTGCATATTCTGCT
TGCTTTTGTTGCCAATGAGAAGCTCGGGTGTCACCCGCGGCTTGGCACGT
GGGACAACCGTTGCTTGCTTGGGCGTCACAAAGAGCCCTGACTTACTCGT
TGGAAGGGAACCTCGTGCTTCCATCGCCGACATATCTGTGCAAGTGTCGA
CAGAGGTGCAGCATACATAAACTCCCTAAAAGAGTATAGCGTGGATGGCG
AGGGAGGGTTATTATGAGTATGCCTACAACAGCAGCAGTCCCCCTGGAAC
GTCTTTTTCGCAGACTGGACATAGACTGCTGACAACAATACATTTTGACA
ATACATTTATTAAAAGAAACCCGCTTCCCTCTCCCAGGCATCAGGTCCAT
TTTAACACACCGCACCCGCTGGACATTGCCCCGTTCTCCCGTGTGCACGC
GAGTTAGTCAAGTCTCGGTTTTGATTGTTTGAGCTTGTGTATGTGTGTGT
GTCCTTCCCATTTATTTTGGCGACAGTCCCCCCAAGTGGAGACATGTACT
ACACCTTGCGGTGTACTTAGAGGCACTACACTTTGCGTTGCATTTGTATG
TACAACTAGAACCAACCGGGGTCACACAGGAGGAGGTGAACACTGGGGCT
TTTTCTTCTTTTTTATTTTCGTTTTTTGCCCCACCTTCCTCCTGCGGTTC
TTGCCTTGGGTTTTATCGCGAGAAGGGTTCAGGTGTCCCTTTCCCTCGTC
AACGTTATTACGTCGAAGTTTGGTACTCACGAGCTTTTCAGCTTTTATCG
CTTTCACCTGCAAAGTCGCAAAAGAAACACTTCTGCTTGGGATTGAACTC
CAGACTTTGCTGCTAGTGGGTTCGAAGTTATACCACTGGACCTCCGGGGT
GAGCTTGGACAAGATTTTTCTTGTCACCGTAAATCCGCAGACTTGGAAAT
AAAAGAGCGTTCGTGTGCGTGCATGGATCGCTCTTGCGTAGATCACTCAC
CTCAAGCATGTCTCTGCTGTCAGCTATAAAGCTATGTACCGAATCGTGCG
TTACAGTGGCTTCCCCCCTAACGGGTCGCTCGCTCTGCATGACAATATAA
CTTGACAATCGTGTATCCGTTGTCTTGCCCCCGCCCGCCGCCGGCACTGT
GACACAACGATTTGAAGCCGGAGGAAGGAGGAGAAGCTGGGGACAGCGTT
GACAACGATAACTCCTCGACGAGCGGGATCAGCAACAACATTATGGTTAT
TGTTTTCTGCGCTCTGGCGTTCGTAGCCAACGGCGGCTTCCTGGTGTATG
TGTTTTGGGTCATGTAGGGCTTGTCTATGGGTGCACTCGTCCGAAAGATG
CCCGCTTTGAGTCAAGCGATGAAGTTGCGTCCGCGTTCTATGTTTTGTGG
GCGCGCTCCAAGGTAGTATTGCTTTTGATATTGATGGTGCTGGTGATGAC
GTTGGTGTAAGATCGACATGGAATCGGTATATTTTTTTTTTTTGTAATGA
TGGGTGGACGAACCTGTGTTTCCGTTGACTTTTCCTCCTGGTGGTGCTCC
TGATTTTTGTTTAGCGGGTTTGGTGGTTGACACTTGTTCTCAGGCCCACT
ACCCGGCATTCCATAATTCCGCTTATATCGTAGTATTCTCAAGGGCAGTT
ACTACGTAAGTATTCGAACCAAGAACAGACAGAGGTTGAAACCCAAGAGG
GTGCTCCTCACAAATCAAGAGAAAATATGTGGGACCCTTTGAGAAGCCGA
GGGCGGTGATCTGGAGAGAGCATCAAACCTGCTGGTAGTCTCACTTTGAA
CCGGCGGCTCGGTGGTCATACTTTGCTGCGCCCGTGTACATACTAGACTA
CTATGTGTGAGCTTACGTGCGTTTGTTGTTGGGTAGTGTAGCCTTCGTTT
CTTCTGTGCTGTGTGTTTGTGCGCTGACGTGTTTATTGTTGCGTCGTCTG
CCTTCGTTTCTTGAGCGTGCTTTTAGCTGAAAATGAAAAGAGAGAAACGT
GAGTAGTTGCGACCCCTCACGCCATATTGTAGTAGTGTCGTAGCCCTTCC
CTCCGAGTGGAGCTCTTTGTCTTGTGCTGCTGTGTTGTGACGCCTGAGAG
AGGGATGGAAGCGTCGTGTACAAACGCTGGGCGGTAATATCGAAACAAAC
GCTTCCAAATTATTTGGTTCTTTTGTTTGGCGGGGCCGGGGCGAGGGGGG
AGAGGAAGAAGTTGAATGGGCTTTACGGTGATAGCAAAACATCAATTGGT
GCTGAATTCCAAGAATTTTGTTGAGGGGATGTATTTGCGTTGGCGGAGAT
CGCCGAGGAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8216:3377..5739-

>mRNA_L-elsbetiae_contig8216.17221.1 ID=mRNA_L-elsbetiae_contig8216.17221.1|Name=mRNA_L-elsbetiae_contig8216.17221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig8216:3377..5739- (Laminarionema elsbetiae ELsaHSoW15)
AAGGGAATCGAGGAGGGGGAAGCGGAAGGTTTTGTGGTGGTGGCGCGGGA
TGACAAGAAGGGAATCGAGGAGGGGGAAGCGGAAGGTTTTGTGGTGGTGG
CGCGGGATGACAAGCCGGAGGAAGGAGGAGAAGCTGGGGACAGCGTTGAC
AACGATAACTCCTCGACGAGCGGGATCAGCAACAACATTATGGTTATTGT
TTTCTGCGCTCTGGCGTTCGTAGCCAACGGCGGCTTCCTGGTGTATGTGT
TTTGGGTCATGTAGCCGGAGGAAGGAGGAGAAGCTGGGGACAGCGTTGAC
AACGATAACTCCTCGACGAGCGGGATCAGCAACAACATTATGGTTATTGT
TTTCTGCGCTCTGGCGTTCGTAGCCAACGGCGGCTTCCTGGTGTATGTGT
TTTGGGTCATGTAG
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