mRNA_L-elsbetiae_contig8204.17208.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8204.17208.1
Unique NamemRNA_L-elsbetiae_contig8204.17208.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8204.17208.1 vs. uniprot
Match: A0A6H5L9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9V8_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.860e-27
Identity = 90/123 (73.17%), Postives = 99/123 (80.49%), Query Frame = 1 
Query:  628 MVVPPYPPGSIQAQQMAXXXXXXXXXXXXXXXXXA--GITPHHMAGVPPHPPHVMAGARGPMPPQQFPQPLYRAAMGQSPQVFMQPPQAGMRMPMAPQQMQGFPPQGMPIMGQPGAPGQGPPP 990
            MVVP +PPG +QAQ   XXXXXXXXXXXXXXXXX    + PHHMAGV   PPHVMAGARGPMPPQQFPQP+YRAAMGQ PQ+FMQPP    RMPMAP Q+QGFPPQG+ ++GQPG  G  PPP
Sbjct:    1 MVVPTFPPGPLQAQXXXXXXXXXXXXXXXXXXXXXXXAMNPHHMAGV--VPPHVMAGARGPMPPQQFPQPMYRAAMGQPPQMFMQPP----RMPMAPGQIQGFPPQGIQVVGQPG--GAAPPP 115
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BLAST of mRNA_L-elsbetiae_contig8204.17208.1 vs. uniprot
Match: D7FVW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW5_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.380e-18
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:  784 MAGARGPMPPQQFPQPLYRAAMGQSPQVFMQPPQAGMRMPMAPQQMQGFPPQGMPIMGQPG 966
            MAGARGPMPPQQFPQP+YRAAMGQ PQ+FMQPP    RMPMAP Q+QGFPPQG+ ++GQPG
Sbjct:    1 MAGARGPMPPQQFPQPMYRAAMGQPPQMFMQPP----RMPMAPGQIQGFPPQGIQVVGQPG 57
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8204.17208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L9V8_9PHAE3.860e-2773.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVW5_ECTSI1.380e-1878.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8204contigL-elsbetiae_contig8204:2995..4316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_002390.1
Exons2
Model size990
Cds size648
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8204.17208.1prot_L-elsbetiae_contig8204.17208.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8204 3337..4316 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.6718073-UTR-L-elsbetiae_contig8204:2994..33361622816904.6718073-UTR-L-elsbetiae_contig8204:2994..3336Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8204 2995..3336 +
1691683901.2705686-UTR-L-elsbetiae_contig8204:2994..33361691683901.2705686-UTR-L-elsbetiae_contig8204:2994..3336Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8204 2995..3336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.6851237-CDS-L-elsbetiae_contig8204:3336..38581622816904.6851237-CDS-L-elsbetiae_contig8204:3336..3858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8204 3337..3858 +
1691683901.281316-CDS-L-elsbetiae_contig8204:3336..38581691683901.281316-CDS-L-elsbetiae_contig8204:3336..3858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8204 3337..3858 +
1622816904.6954267-CDS-L-elsbetiae_contig8204:4190..43161622816904.6954267-CDS-L-elsbetiae_contig8204:4190..4316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8204 4191..4316 +
1691683901.2915306-CDS-L-elsbetiae_contig8204:4190..43161691683901.2915306-CDS-L-elsbetiae_contig8204:4190..4316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8204 4191..4316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8204.17208.1

>prot_L-elsbetiae_contig8204.17208.1 ID=prot_L-elsbetiae_contig8204.17208.1|Name=mRNA_L-elsbetiae_contig8204.17208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=216bp
MQHQQHQHPHHAQQHQAQQHAQQHAQQHAQQQQQQQLQHQARSQPQQPQQ
QQQQQPQHPLTPQQHPSTPQQQQPIPAAVPPGTPGAPTAGPGGAHMVVPP
YPPGSIQAQQMAAVAAAAAAAAAAAGGGGAGITPHHMAGVPPHPPHVMAG
ARGPMPPQQFPQPLYRAAMGQSPQVFMQPPQAGMRMPMAPQQMQGFPPQG
MPIMGQPGAPGQGPPP
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mRNA from alignment at L-elsbetiae_contig8204:2995..4316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8204.17208.1 ID=mRNA_L-elsbetiae_contig8204.17208.1|Name=mRNA_L-elsbetiae_contig8204.17208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1322bp|location=Sequence derived from alignment at L-elsbetiae_contig8204:2995..4316+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTCCGACATTGTTTTTCCTGTTTTAATTTGCAGCCCGGGCGTTTGGAA
ACATTGAACCCGTGATTTTTCTGTTTACACGAGCAGCACACTTTGTGAAT
AGTGTGTATGGGTGGAGTCTTAGTCTTTTTGGCTGACGGTGTGTGTCTGT
TTCGAAACTCGCCGCCGCAGCGCGGTGGCATATCATCGGCCGCTGTGTTC
TGTCTTTTTTTTCGTCGTTTACTCCGCACCTCTTTGGTCGTCAGTCTTTC
GTTCGTTCGTTGGGTAAAGCAGTAGTAGTGAGATTCCACAGAAGTGGTAT
CCGATATCGTTGCCATTCCCCCCTTGCTCTCAACAGCAAACCATGCAGCA
CCAGCAGCACCAGCACCCGCATCACGCGCAGCAGCACCAGGCACAGCAGC
ATGCACAGCAGCATGCACAGCAGCATGCACAGCAGCAGCAGCAGCAGCAG
CTGCAGCACCAGGCTCGCTCTCAACCACAGCAGCCGCAGCAGCAGCAGCA
GCAGCAGCCTCAACATCCCTTGACACCTCAGCAACACCCCTCCACGCCGC
AGCAGCAGCAGCCGATACCGGCCGCTGTCCCGCCGGGAACGCCGGGGGCC
CCCACGGCCGGCCCGGGGGGGGCACATATGGTCGTGCCCCCCTACCCGCC
GGGGTCAATACAGGCGCAGCAGATGGCGGCTGTCGCGGCGGCGGCGGCGG
CGGCGGCAGCAGCAGCCGGTGGGGGGGGGGCAGGGATAACGCCGCACCAC
ATGGCCGGTGTGCCGCCCCACCCGCCGCACGTCATGGCGGGGGCAAGGGG
CCCCATGCCGCCGCAGCAGTTCCCGCAGCCTTTGTATCGGGCGGCGATGG
GACAGTCCCCGCAGGTTCGATTCGTCAGTGTGTGTGTGTGTGGGGGGGGG
GGTCCGGGGGTGGCATACACTGCCCAGCAGTGCTCGAGCTTCGAATTTAT
TCATGCGAAGTCGGCCAAAAATGAGCCGCGTAGTTTGGCACAGGTGTGGA
AAGGTTCAAGATTGCAGCAATAATTCTAAGATGCCGATAACTGAGTTCTT
GAGAGTGCTGGCACGCATCACAACCCCCCTCTATTTTTTTCCTTTACCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCACTCCCCGCCCCC
CCCCCGCCCACCCGCCGCCCGGCGCCCGGCCCGTCTCTGGGCCCAGGTGT
TCATGCAGCCGCCTCAGGCGGGCATGCGCATGCCGATGGCACCGCAGCAG
ATGCAGGGGTTCCCGCCGCAGGGCATGCCGATCATGGGGCAACCGGGGGC
TCCGGGACAAGGTCCGCCCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8204:2995..4316+

>mRNA_L-elsbetiae_contig8204.17208.1 ID=mRNA_L-elsbetiae_contig8204.17208.1|Name=mRNA_L-elsbetiae_contig8204.17208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig8204:2995..4316+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCACCAGCAGCACCAGCACCCGCATCACGCGCAGCAGCACCAGGC
ACAGCAGCATGCACAGCAGCATGCACAGCAGCATGCACAGCAGCAGCAGC
AGCAGCAGCTGCAGCACCAGGCTCGCTCTCAACCACAGCAGCCGCAGCAG
CAGCAGCAGCAGCAGCCTCAACATCCCTTGACACCTCAGCAACACCCCTC
CACGCCGCAGCAGCAGCAGCCGATACCGGCCGCTGTCCCGCCGGGAACGC
CGGGGGCCCCCACGGCCGGCCCGGGGGGGGCACATATGGTCGTGCCCCCC
TACCCGCCGGGGTCAATACAGGCGCAGCAGATGGCGGCTGTCGCGGCGGC
GGCGGCGGCGGCGGCAGCAGCAGCCGGTGGGGGGGGGGCAGGGATAACGC
CGCACCACATGGCCGGTGTGCCGCCCCACCCGCCGCACGTCATGGCGGGG
GCAAGGGGCCCCATGCCGCCGCAGCAGTTCCCGCAGCCTTTGTATCGGGC
GGCGATGGGACAGTCCCCGCAGATGCAGCACCAGCAGCACCAGCACCCGC
ATCACGCGCAGCAGCACCAGGCACAGCAGCATGCACAGCAGCATGCACAG
CAGCATGCACAGCAGCAGCAGCAGCAGCAGCTGCAGCACCAGGCTCGCTC
TCAACCACAGCAGCCGCAGCAGCAGCAGCAGCAGCAGCCTCAACATCCCT
TGACACCTCAGCAACACCCCTCCACGCCGCAGCAGCAGCAGCCGATACCG
GCCGCTGTCCCGCCGGGAACGCCGGGGGCCCCCACGGCCGGCCCGGGGGG
GGCACATATGGTCGTGCCCCCCTACCCGCCGGGGTCAATACAGGCGCAGC
AGATGGCGGCTGTCGCGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCCGGT
GGGGGGGGGGCAGGGATAACGCCGCACCACATGGCCGGTGTGCCGCCCCA
CCCGCCGCACGTCATGGCGGGGGCAAGGGGCCCCATGCCGCCGCAGCAGT
TCCCGCAGCCTTTGTATCGGGCGGCGATGGGACAGTCCCCGCAGGTGTTC
ATGCAGCCGCCTCAGGCGGGCATGCGCATGCCGATGGCACCGCAGCAGAT
GCAGGGGTTCCCGCCGCAGGGCATGCCGATCATGGGGCAACCGGGGGCTC
CGGGACAAGGTCCGCCCCCGGTGTTCATGCAGCCGCCTCAGGCGGGCATG
CGCATGCCGATGGCACCGCAGCAGATGCAGGGGTTCCCGCCGCAGGGCAT
GCCGATCATGGGGCAACCGGGGGCTCCGGGACAAGGTCCGCCCCCG
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