mRNA_L-elsbetiae_contig820.17201.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig820.17201.1
Unique NamemRNA_L-elsbetiae_contig820.17201.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig820.17201.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 336 bits (861), Expect = 1.350e-111
Identity = 171/206 (83.01%), Postives = 176/206 (85.44%), Query Frame = 1 
Query:  241 MKMSFESELGAQAPLGFFDPLGLMIDQ-------------------------DQERFDRLRYVEVKHGRVAMLAVAGHLTAQNYRFPGYLSLDAKLTFADMPNGVAAISKIPPLGLAQIVGFIGFLELSVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMVHEEISNQPYIINDLLNAPYQFN 783
            MKMSFESELGAQ PLGFFDPLGL+IDQ                         DQERFDRLRYVEVKHGR++MLAVAGHL AQNYRFPGYLS DAKLTFADMPNGVAAISKIPPLGLAQIV FIGFLEL+VMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMM+HEEISNQPYIINDLLNAPY FN
Sbjct:    1 MKMSFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206
[Close]
BLAST of mRNA_L-elsbetiae_contig820.17201.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 322 bits (825), Expect = 5.550e-106
Identity = 157/198 (79.29%), Postives = 176/198 (88.89%), Query Frame = 1 
Query:  190 SAFNGAAVTAQAKSNSAMKMSFESELGAQAPLGFFDPLGLMIDQDQERFDRLRYVEVKHGRVAMLAVAGHLTAQNYRFPGYLSLDAKLTFADMPNGVAAISKIPPLGLAQIVGFIGFLELSVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMVHEEISNQPYIINDLLNAPYQFN 783
            SAFNGAA+T  AK+ SAMKMSFESE+GAQAPLGF+DPLGL+ D DQERF+RLRYVEVKHGR+AMLA+AGHLT QN R PG LS  A L+FADMPNGVAA+SKIPP GLAQI  FIGFLEL+VMKNVEGSFPGD T+GGNPF A WDAMSEET+ SKRAIELNNGRAAQMGILA+MVHEE++N+PY+INDL+ A Y FN
Sbjct:   20 SAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
[Close]
BLAST of mRNA_L-elsbetiae_contig820.17201.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 322 bits (824), Expect = 6.380e-106
Identity = 159/198 (80.30%), Postives = 175/198 (88.38%), Query Frame = 1 
Query:  190 SAFNGAAVTAQAKSNSAMKMSFESELGAQAPLGFFDPLGLMIDQDQERFDRLRYVEVKHGRVAMLAVAGHLTAQNYRFPGYLSLDAKLTFADMPNGVAAISKIPPLGLAQIVGFIGFLELSVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMVHEEISNQPYIINDLLNAPYQFN 783
            SAFNGAA++  AKS+SAMKMSFESE+GAQAPLGF+DPLGL+ D DQERF+RLRYVEVKHGR+AMLA+AGHLT QN R PG LS  A L+FADMPNGVAA+SKIPP GLAQI GFIGFLEL+VMKNVEGSFPGD  IGGNPFA+ WD+MS ET+ SKRAIELNNGRAAQMGIL MMVHEE+SNQPYI NDLL A Y FN
Sbjct:   14 SAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
[Close]
BLAST of mRNA_L-elsbetiae_contig820.17201.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 1.630e-105
Identity = 158/198 (79.80%), Postives = 175/198 (88.38%), Query Frame = 1 
Query:  190 SAFNGAAVTAQAKSNSAMKMSFESELGAQAPLGFFDPLGLMIDQDQERFDRLRYVEVKHGRVAMLAVAGHLTAQNYRFPGYLSLDAKLTFADMPNGVAAISKIPPLGLAQIVGFIGFLELSVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMVHEEISNQPYIINDLLNAPYQFN 783
            SAFNGAAV   AKS+SAMKMSFESE+GAQ PLGF+DPLGL+ D DQERF+RLRYVEVKHGR+AMLA+AGHLT QN R PG LS  A L+FADMPNGVAA+SKIPP GLAQI  F+GFLEL+VMKNVEGSFPGD T GGNPFA+ WDAMSEET+ SKRAIELNNGRAAQMGILA+MVHEE++N+PYIINDLL A Y FN
Sbjct:   21 SAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
[Close]
BLAST of mRNA_L-elsbetiae_contig820.17201.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 1.810e-105
Identity = 157/198 (79.29%), Postives = 175/198 (88.38%), Query Frame = 1 
Query:  190 SAFNGAAVTAQAKSNSAMKMSFESELGAQAPLGFFDPLGLMIDQDQERFDRLRYVEVKHGRVAMLAVAGHLTAQNYRFPGYLSLDAKLTFADMPNGVAAISKIPPLGLAQIVGFIGFLELSVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMVHEEISNQPYIINDLLNAPYQFN 783
            SAFNGAAV   AKS+SAMKMSFESE+GAQ PLGF+DPLGL+ D DQERF+RLRYVEVKHGR+AMLA+AGHLT QN R PG LS  A L+FADMPNGVAA+SKIPP GLAQI  F+GFLEL+VMKNVEGSFPGD T GGNPFA+ WDAMSEET+ SKRAIELNNGRAAQMGILA+MVHEE++N+PY+INDLL A Y FN
Sbjct:   24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
[Close]
BLAST of mRNA_L-elsbetiae_contig820.17201.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 317 bits (812), Expect = 4.950e-104
Identity = 156/198 (78.79%), Postives = 176/198 (88.89%), Query Frame = 1 
Query:  190 SAFNGAAVTAQAKSNSAMKMSFESELGAQAPLGFFDPLGLMIDQDQERFDRLRYVEVKHGRVAMLAVAGHLTAQNYRFPGYLSLDAKLTFADMPNGVAAISKIPPLGLAQIVGFIGFLELSVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMVHEEISNQPYIINDLLNAPYQFN 783
            SAFNGAA+T  AKS+SAMKMSFESE+GAQAPLGF+DPLGL+ D DQ+ F+RLRYVEVK GR+AMLA+AGHLT QN R PG LS  A L+FADMPNGVAA+SKIPP GLAQI GFIGFLEL+VMKNVEGSFPGD T+GGNPFA+ WDAMS ET+ SKRAIELNNGRAAQMGILA+MVHEE++N+PY+INDLL A Y FN
Sbjct:   19 SAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
[Close]
BLAST of mRNA_L-elsbetiae_contig820.17201.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 1.370e-102
Identity = 156/197 (79.19%), Postives = 174/197 (88.32%), Query Frame = 1 
Query:  193 AFNGAAVTAQAKSNSAMKMSFESELGAQAPLGFFDPLGLMIDQDQERFDRLRYVEVKHGRVAMLAVAGHLTAQNYRFPGYLSLDAKLTFADMPNGVAAISKIPPLGLAQIVGFIGFLELSVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMVHEEISNQPYIINDLLNAPYQFN 783
            AFNGAAV   AKS+SAMKMSFESE+GAQ PLGF+DPLGL+ D DQERF+RLRYVEVKHGR+AMLA+AGHLT QN R PG LS  A L+FADMPNGVAA+SKIPP GLAQI  FIGFLEL+VMKNVEGSFPGD T+GGNPF + WDAMSEET+ SKRAIELNNGRAAQMGILA+MVHEE++N+PY+INDLL A Y FN
Sbjct:  181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
[Close]
BLAST of mRNA_L-elsbetiae_contig820.17201.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 304 bits (779), Expect = 1.480e-99
Identity = 147/182 (80.77%), Postives = 164/182 (90.11%), Query Frame = 1 
Query:  238 AMKMSFESELGAQAPLGFFDPLGLMIDQDQERFDRLRYVEVKHGRVAMLAVAGHLTAQNYRFPGYLSLDAKLTFADMPNGVAAISKIPPLGLAQIVGFIGFLELSVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMVHEEISNQPYIINDLLNAPYQFN 783
            AMKMSFE E+GAQAPLGF+DPLGL+ D DQERF+RLRYVEVKHGR+AMLA+AGHLT QN R PG LS  A L+FADMPNGVAA+SKIPP GLAQI GFIGFLEL+VMKNVEGSFPGD T+GGNPFA+ WDAMSEET+ SKRAIELNNGRAAQMGILA+MVHEE++N+PY+INDLL A Y FN
Sbjct:    1 AMKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
[Close]
BLAST of mRNA_L-elsbetiae_contig820.17201.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 4.640e-98
Identity = 144/181 (79.56%), Postives = 161/181 (88.95%), Query Frame = 1 
Query:  241 MKMSFESELGAQAPLGFFDPLGLMIDQDQERFDRLRYVEVKHGRVAMLAVAGHLTAQNYRFPGYLSLDAKLTFADMPNGVAAISKIPPLGLAQIVGFIGFLELSVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMVHEEISNQPYIINDLLNAPYQFN 783
            MKMSFESE+GAQ PLGF+DPLGL+ D DQERF+RLRYVEVKHGR+AMLA+AGHLT QN R PG LS  A L+FADMPNGVAA+SKIPP GLAQI  FIGFLEL+VMKNVEGSFPGD T+GGNPF + WDAMSEET+ SKRAIELNNGRAAQMGILA+MVHEE++N+PY+INDLL A Y FN
Sbjct:    1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
[Close]
BLAST of mRNA_L-elsbetiae_contig820.17201.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 291 bits (744), Expect = 8.040e-94
Identity = 145/196 (73.98%), Postives = 160/196 (81.63%), Query Frame = 1 
Query:  196 FNGAAVTAQAKSNSAMKMSFESELGAQAPLGFFDPLGLMIDQDQERFDRLRYVEVKHGRVAMLAVAGHLTAQNYRFPGYLSLDAKLTFADMPNGVAAISKIPPLGLAQIVGFIGFLELSVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMVHEEISNQPYIINDLLNAPYQFN 783
            FNGAA+   AKS+SAMKMSFESE+GAQ P+GF+DPLGL+ D DQERFDRLRYVE+KHGR+AMLAV GH+T QN R PG LS    L FAD PNGVAA SKIPPLG  QI+  IG  EL V+K VEGSFPGD T GGN F + WD MSEET+ SKRAIELNNGRAAQMGILAMMVHE++SNQPYIINDL  A YQFN
Sbjct:   17 FNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig820.17201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBS3_9PHAE1.350e-11183.01LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPB_MACPY5.550e-10679.29Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
FCPF_MACPY6.380e-10680.30Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]
A0A6H5KCX6_9PHAE1.630e-10579.80LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A6H5JHT6_9PHAE1.810e-10579.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
FCPC_MACPY4.950e-10478.79Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
D8LNK6_ECTSI1.370e-10279.19Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
FCPD_MACPY1.480e-9980.77Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
A0A6H5JDS8_9PHAE4.640e-9879.56LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPE_MACPY8.040e-9473.98Fucoxanthin-chlorophyll a-c binding protein E, chl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig820contigL-elsbetiae_contig820:8323..10416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score306.2
Seed ortholog evalue1e-80
Seed eggNOG ortholog2880.D7G1R7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CDPH@1,2S3EU@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-17_002070.1
Exons2
Model size1346
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig820.17201.1prot_L-elsbetiae_contig820.17201.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig820 8563..9856 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.30699-UTR-L-elsbetiae_contig820:8322..85621622816904.30699-UTR-L-elsbetiae_contig820:8322..8562Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig820 8323..8562 +
1691683900.9416132-UTR-L-elsbetiae_contig820:8322..85621691683900.9416132-UTR-L-elsbetiae_contig820:8322..8562Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig820 8323..8562 +
1622816904.3419735-UTR-L-elsbetiae_contig820:9856..104161622816904.3419735-UTR-L-elsbetiae_contig820:9856..10416Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig820 9857..10416 +
1691683900.989296-UTR-L-elsbetiae_contig820:9856..104161691683900.989296-UTR-L-elsbetiae_contig820:9856..10416Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig820 9857..10416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.3197546-CDS-L-elsbetiae_contig820:8562..86431622816904.3197546-CDS-L-elsbetiae_contig820:8562..8643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig820 8563..8643 +
1691683900.952926-CDS-L-elsbetiae_contig820:8562..86431691683900.952926-CDS-L-elsbetiae_contig820:8562..8643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig820 8563..8643 +
1622816904.3321943-CDS-L-elsbetiae_contig820:9391..98561622816904.3321943-CDS-L-elsbetiae_contig820:9391..9856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig820 9392..9856 +
1691683900.9703586-CDS-L-elsbetiae_contig820:9391..98561691683900.9703586-CDS-L-elsbetiae_contig820:9391..9856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig820 9392..9856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig820.17201.1

>prot_L-elsbetiae_contig820.17201.1 ID=prot_L-elsbetiae_contig820.17201.1|Name=mRNA_L-elsbetiae_contig820.17201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
MKMSFESELGAQAPLGFFDPLGLMIDQDQERFDRLRYVEVKHGRVAMLAV
AGHLTAQNYRFPGYLSLDAKLTFADMPNGVAAISKIPPLGLAQIVGFIGF
LELSVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAA
QMGILAMMVHEEISNQPYIINDLLNAPYQFN*
back to top

mRNA from alignment at L-elsbetiae_contig820:8323..10416+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig820.17201.1 ID=mRNA_L-elsbetiae_contig820.17201.1|Name=mRNA_L-elsbetiae_contig820.17201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2094bp|location=Sequence derived from alignment at L-elsbetiae_contig820:8323..10416+ (Laminarionema elsbetiae ELsaHSoW15)
CACTATTGTATTCCCCGTCAATTTTCCATTTCCTATTGTTCCTTGTCGGC
CGTGTTTGAGAGTGCTTGGTTTGTGCGGCGTCCGTTGTGGACATATGTAT
CTGTATTTATTTACGTCACCGTTGTTGAAACCGTTACCCGCCGTCTCTTT
GTCTCCTTGCTGTGTCCAATTTTTTCCTGGAAACCTTCCAGCGCCTTCAA
CGGTGCCGCCGTGACCGCCCAGGCGAAGTCCAACTCCGCCATGAAGATGT
CGTTCGAGTCTGAGCTCGGCGCCCAGGCCCCCCTCGGGTTCTTCGACCCG
CTCGGCCTCATGATCGACCAGGTTAGCGCCCCCACCACCTTGCCATGACA
TGGCACGGCGATTGTTACAGAGTGACAATTGTTTGTCGTTTGCTGATGAT
TTTTGCCGACTTTCTGCGAACCTAATTGTTTCGGAAACGTACCTGGTATT
TTCCGTACGCGTGTTCGTTGGCATTTGATAGTACATACACTACATAGAGT
GCTGCTGCCTCCCGGTTGTGTGGCGAGTCGGATCTGCTTCGTTTCAGAGC
AGAGGGCGGAGGAAAAAATCAGCTGAGTTTTGGAGTTATCCCGCTGGCGA
TGTGCTGAGGCCGTACTCGCTGGCCGCTGAGATAGCCCCGTCAGCTTCAT
GTATTCGTTGCGTACTGGAAGTAGTATTTGTGTGGGTTTAGGAGAGCATT
GCTGTCAAAGTGATCCGCGGATGTTCGGCTATTTTTGCCTACTGTTTTTG
TCGTGTATCAGTTGCCTCAACCAGCCTAGGAGAGCTAAAAATGTTGGGCC
CCTTCGACCATCTCCAGTCTTCGTCATTCGTGTCAACCTCTGGAAGCCAG
TCCACAAGGTTGCTTCAGTAGTGAGTTCCCCTCAACTTTTTTCACCTATC
CCCCGTACCCTTTGAGCTCCTCACGCAGCTGAGAGATGTGCGTTCTACAT
CTGACAGCTTTTTTTTCTGGTGCCTTTTATCTTGTCAAATTTGCTCCTGG
CGTTCAACTGCCCCCCTGATCCTCTCTTGCCCATGCCCTGCCTGCGTCGC
CGCTGCTCTCACACCACAGGACCAGGAGCGCTTCGACCGCCTGCGCTACG
TGGAGGTAAAGCACGGCCGCGTTGCTATGCTCGCCGTGGCGGGGCACCTC
ACCGCGCAGAACTACCGATTCCCGGGGTACCTGTCGTTGGACGCGAAGCT
CACTTTCGCGGACATGCCGAACGGCGTCGCGGCCATCTCCAAGATTCCCC
CGCTGGGCCTTGCGCAGATCGTGGGCTTTATCGGCTTCCTTGAGCTTTCG
GTGATGAAGAACGTAGAGGGCTCTTTCCCGGGGGACATGACCATCGGGGG
CAACCCCTTCGCCGCACAGTGGGACGCCATGTCGGAGGAGACCAAGCTCT
CCAAGCGCGCGATCGAGCTCAACAACGGCCGTGCCGCACAGATGGGCATC
CTCGCCATGATGGTCCACGAGGAGATCTCCAACCAGCCCTACATCATCAA
CGACCTCCTCAACGCGCCGTACCAGTTCAACTAGAGGCAGCGGCTTGTGT
AGTATATTTGCTGCTGCTGCTGGTTAAACATTTTTGCACGCCGCTTTCGG
TCCTCTGTAGCGGGCGTTGTTGACTTTGCCGTTGTTTGCAGGGGTGGACT
TCTGAGGAAAACGTGTTTGTATGTACCCAGGTGACGTCTGTGTGTGTGTT
TTCACCCTTGTCGGCAAAGACGCCCTATCTACACTGTTGGACTTGAGGGA
CGGGGGGGGTGACTTGTCACAGACTTGGTCTTCTTAGCGGCTGGCTGCAA
GGCGCGTACGTAGCGTGTCTCTAGATTTTTTTTAATTTTAGCGGAGGATT
CTCCTTTCGCACGCCAGCGGTTTTTACCTCTACCTCGTTCTGTACCTAGA
ACATCTTGGCTGCTGTAGCCTTCGGTAAGCTTTTTTGAGACAGGAGGTAC
GTACATTTGGCGGGGAGCTGGCGGCGAAAGGCCGGTGTGAAGTTCAGCTG
TTTTTTTGCAAGAAAGACGGCGGGACATTTTAAGTGGTGGCACAATTTGC
TGTGTTGCTTGCTGCCACGGACGGGTTGTTTTCCGGCATGTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig820:8323..10416+

>mRNA_L-elsbetiae_contig820.17201.1 ID=mRNA_L-elsbetiae_contig820.17201.1|Name=mRNA_L-elsbetiae_contig820.17201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig820:8323..10416+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGATGTCGTTCGAGTCTGAGCTCGGCGCCCAGGCCCCCCTCGGGTT
CTTCGACCCGCTCGGCCTCATGATCGACCAGATGAAGATGTCGTTCGAGT
CTGAGCTCGGCGCCCAGGCCCCCCTCGGGTTCTTCGACCCGCTCGGCCTC
ATGATCGACCAGGACCAGGAGCGCTTCGACCGCCTGCGCTACGTGGAGGT
AAAGCACGGCCGCGTTGCTATGCTCGCCGTGGCGGGGCACCTCACCGCGC
AGAACTACCGATTCCCGGGGTACCTGTCGTTGGACGCGAAGCTCACTTTC
GCGGACATGCCGAACGGCGTCGCGGCCATCTCCAAGATTCCCCCGCTGGG
CCTTGCGCAGATCGTGGGCTTTATCGGCTTCCTTGAGCTTTCGGTGATGA
AGAACGTAGAGGGCTCTTTCCCGGGGGACATGACCATCGGGGGCAACCCC
TTCGCCGCACAGTGGGACGCCATGTCGGAGGAGACCAAGCTCTCCAAGCG
CGCGATCGAGCTCAACAACGGCCGTGCCGCACAGATGGGCATCCTCGCCA
TGATGGTCCACGAGGAGATCTCCAACCAGCCCTACATCATCAACGACCTC
CTCAACGCGCCGTACCAGTTCAACTAGGACCAGGAGCGCTTCGACCGCCT
GCGCTACGTGGAGGTAAAGCACGGCCGCGTTGCTATGCTCGCCGTGGCGG
GGCACCTCACCGCGCAGAACTACCGATTCCCGGGGTACCTGTCGTTGGAC
GCGAAGCTCACTTTCGCGGACATGCCGAACGGCGTCGCGGCCATCTCCAA
GATTCCCCCGCTGGGCCTTGCGCAGATCGTGGGCTTTATCGGCTTCCTTG
AGCTTTCGGTGATGAAGAACGTAGAGGGCTCTTTCCCGGGGGACATGACC
ATCGGGGGCAACCCCTTCGCCGCACAGTGGGACGCCATGTCGGAGGAGAC
CAAGCTCTCCAAGCGCGCGATCGAGCTCAACAACGGCCGTGCCGCACAGA
TGGGCATCCTCGCCATGATGGTCCACGAGGAGATCTCCAACCAGCCCTAC
ATCATCAACGACCTCCTCAACGCGCCGTACCAGTTCAACTAG
back to top