mRNA_L-elsbetiae_contig8196.17189.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8196.17189.1 vs. uniprot
Match: D7FZA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA3_ECTSI) HSP 1 Score: 488 bits (1255), Expect = 1.250e-162 Identity = 264/350 (75.43%), Postives = 289/350 (82.57%), Query Frame = 1 Query: 1 QSMVMQKKLRKVISYVARVQDFSLKGPP-PKG-KGTMDAALLKWFRAIPGVGSEALAGVLMTMQDKGVRLHPDSYSVVISKANHDGNKELSETLYKMLLAGNGAPSLSAANATIKGCATIDEALGIMASLEEHGLSADKFTFAALLHCCSNAVNDDLQGQRATQVWEAMKDEEIIPHGGMLASYLLALMRSGGWELALEVRERYRDGSEK--LSHADRHVDKLDFMAREDAVVDGVIANGLVDNRQPKLALAYVLQVVKAREEELVKQMGKR--MERFVDEDNHTVLAGIRACKEAGSCETAMALLAACEARWKTGPLAPEADRREGGGNG--ARYEWRDMLVRTRLSRR 1026 QSMVMQKKLRKVISYVAR+QD LKGP KG K TMD ALLKWFRAIPGV SEA+AGVLMTM DKGVRLHPDSYSVVISKAN DGNKELS TLYKMLLA N APSLSAANA IKG ATIDEAL + +L E GLS DKFTFAALLHCCS AV DDLQGQRAT+VWEAM E I PHGGMLASYLL+LMRS W+ AL+VRERYR E+ LSHA+RHV KLDF+ARE+AVVDGV+ANGLVDN+QP LALAYVL+V+KAREEE +G ++ F+DEDNHTVLAGIRACK+ GSCETAM LL ACEARW GPL +A R +GG G A++EWR MLVRTRLSRR Sbjct: 373 QSMVMQKKLRKVISYVARIQDLPLKGPSRSKGRKNTMDTALLKWFRAIPGVSSEAMAGVLMTMLDKGVRLHPDSYSVVISKANQDGNKELSGTLYKMLLAANAAPSLSAANAAIKGSATIDEALATVETLREQGLSPDKFTFAALLHCCSAAVGDDLQGQRATEVWEAMCGEGIRPHGGMLASYLLSLMRSADWKTALDVRERYRGDEEEFQLSHAERHVHKLDFVAREEAVVDGVVANGLVDNKQPDLALAYVLEVLKAREEEGASDIGSDSDLKHFIDEDNHTVLAGIRACKQVGSCETAMGLLEACEARWARGPLERDAGRGDGGEEGQWAQHEWRQMLVRTRLSRR 722
BLAST of mRNA_L-elsbetiae_contig8196.17189.1 vs. uniprot
Match: A0A6H5L791_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L791_9PHAE) HSP 1 Score: 215 bits (547), Expect = 4.360e-63 Identity = 120/175 (68.57%), Postives = 137/175 (78.29%), Query Frame = 1 Query: 532 MLASYLLALMRSGGWELALEVRERYRDGSEK--LSHADRHVDKLDFMAREDAVVDGVIANGLVDNRQPKLALAYVLQVVKAREEELVKQMGKR----MERFVDEDNHTVLAGIRACKEAGSCETAMALLAACEARWKTGPLAPEADRREGGGNG----ARYEWRDMLVRTRLSRR 1026 MLASYLLALMRSG W+ AL+VRERYR E+ LSHA+RHV KLDF+ARE+AVVDGV+ANGLVDN+QP LALAYVL+V+KAREE G ++ F+DEDNHTVLAGIRACK+AGSCETA+ LL ACEARW GPL E D GGG+ A+YEWR MLVRTRLSRR Sbjct: 1 MLASYLLALMRSGDWKTALDVRERYRGDKEEFQLSHAERHVHKLDFVAREEAVVDGVVANGLVDNKQPGLALAYVLEVLKAREEGKEGASGNGNDSDLKHFIDEDNHTVLAGIRACKQAGSCETAIGLLEACEARWAKGPL--ERDAGSGGGSEEGQWAQYEWRAMLVRTRLSRR 173 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8196.17189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8196.17189.1 >prot_L-elsbetiae_contig8196.17189.1 ID=prot_L-elsbetiae_contig8196.17189.1|Name=mRNA_L-elsbetiae_contig8196.17189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=341bp MVMQKKLRKVISYVARVQDFSLKGPPPKGKGTMDAALLKWFRAIPGVGSEback to top mRNA from alignment at L-elsbetiae_contig8196:442..7609+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8196.17189.1 ID=mRNA_L-elsbetiae_contig8196.17189.1|Name=mRNA_L-elsbetiae_contig8196.17189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7168bp|location=Sequence derived from alignment at L-elsbetiae_contig8196:442..7609+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8196:442..7609+ >mRNA_L-elsbetiae_contig8196.17189.1 ID=mRNA_L-elsbetiae_contig8196.17189.1|Name=mRNA_L-elsbetiae_contig8196.17189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2046bp|location=Sequence derived from alignment at L-elsbetiae_contig8196:442..7609+ (Laminarionema elsbetiae ELsaHSoW15)back to top |