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Homology
BLAST of mRNA_L-elsbetiae_contig8187.17180.1 vs. uniprot
Match: D7FTD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD6_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 1.960e-13 Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 3
Query: 1278 RPHLFHCILAGSH-AMDRGMYDSIRAAYNSIGHVGCRPAPPFEEWSGMSQLCDHVFCRSMEREVHIIHNTEPLVE 1499
RPH HC LA SH + R MYD++ YNSI GC APP+EEW ++Q+CD++FCRS E E+H H+ E L++
Sbjct: 228 RPHFIHCTLAVSHFSKRRDMYDAMNGVYNSIRPPGCWRAPPYEEWRTITQICDNMFCRSFEAEIHKAHHGEGLMQ 302
BLAST of mRNA_L-elsbetiae_contig8187.17180.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 3.610e-6 Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 3
Query: 1284 HLFHCILAG-SHAMDRGMYDSIRAAYNSIGHVGCRPAPPFEEWSGMSQLCDHVFCRSMEREV 1466
H H L G ++A R Y+++RAAYN + PAPPFEEW+GMS +CDH +CR++ ++
Sbjct: 605 HNVHTQLWGLANARRREQYEALRAAYNPMRPARLSPAPPFEEWTGMSDICDHPYCRNVAEQM 666
BLAST of mRNA_L-elsbetiae_contig8187.17180.1 vs. uniprot
Match: D8LSE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE2_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 1.010e-5 Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 3
Query: 1284 HLFHCILAG-SHAMDRGMYDSIRAAYNSIGHVGCRPAPPFEEWSGMSQLCDHVFCRSMEREV 1466
H H L G ++A R Y+++RAAYN + PAPPF+EW+GMS +CDH +CR++ ++
Sbjct: 529 HNAHTQLWGLANARRREHYEALRAAYNPMRPASLSPAPPFDEWTGMSDICDHPYCRNVAEQM 590
BLAST of mRNA_L-elsbetiae_contig8187.17180.1 vs. uniprot
Match: D7FTG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTG5_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 2.430e-5 Identity = 33/85 (38.82%), Postives = 42/85 (49.41%), Query Frame = 3
Query: 1284 HLFHCILAGSHAMD----RGMYDSIRAAYNSIGHVGCRPAPPFEEWSGMSQLCDHVFCRSME----REVHIIHNTEPLVEPTDQG 1514
HL H IL A+D RG+Y +R YN PAPP EEW G+S CDH CR E R+ + +T+PL + G
Sbjct: 236 HLAHGILGSLAAIDDSRARGLYSRLREVYNPSRLSSSLPAPPLEEWRGISAFCDHFLCRIFEGVIARQALSVFSTQPLCARSGAG 320
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Exons | 2 |
Model size | 3385 |
Cds size | 1017 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816902.3369246-UTR-L-elsbetiae_contig8187:2660..3877 | 1622816902.3369246-UTR-L-elsbetiae_contig8187:2660..3877 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8187 2661..3877 - |
1691683899.410323-UTR-L-elsbetiae_contig8187:2660..3877 | 1691683899.410323-UTR-L-elsbetiae_contig8187:2660..3877 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8187 2661..3877 - |
1622816902.3683498-UTR-L-elsbetiae_contig8187:6096..7247 | 1622816902.3683498-UTR-L-elsbetiae_contig8187:6096..7247 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8187 6097..7247 - |
1691683899.4413986-UTR-L-elsbetiae_contig8187:6096..7247 | 1691683899.4413986-UTR-L-elsbetiae_contig8187:6096..7247 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig8187 6097..7247 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816902.3473833-CDS-L-elsbetiae_contig8187:3877..4598 | 1622816902.3473833-CDS-L-elsbetiae_contig8187:3877..4598 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8187 3878..4598 - |
1691683899.4214642-CDS-L-elsbetiae_contig8187:3877..4598 | 1691683899.4214642-CDS-L-elsbetiae_contig8187:3877..4598 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8187 3878..4598 - |
1622816902.3583179-CDS-L-elsbetiae_contig8187:5800..6096 | 1622816902.3583179-CDS-L-elsbetiae_contig8187:5800..6096 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8187 5801..6096 - |
1691683899.4311354-CDS-L-elsbetiae_contig8187:5800..6096 | 1691683899.4311354-CDS-L-elsbetiae_contig8187:5800..6096 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8187 5801..6096 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8187.17180.1 >prot_L-elsbetiae_contig8187.17180.1 ID=prot_L-elsbetiae_contig8187.17180.1|Name=mRNA_L-elsbetiae_contig8187.17180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=339bp
MRRITAFAVFNSIRPLFLFRWAPFLLATNPFVASHPRRPLSPRPHLFHCI LAGSHAMDRGMYDSIRAAYNSIGHVGCRPAPPFEEWSGMSQLCDHVFCRS MEREVHIIHNTEPLVEPTDQGLVEGLPSSLNDAVSSRTGLQAGSGGRTGL QAGSGGRTGLQAGSKGRTGLQAGSKGRTGLQVDVGRVHNSASGPVHAGPV LVEADVVSSTEPPHFQKSTAKQYGGSSAVSGGGAAPQGYRYNLADPVATN RLAPVPAYPVAAAASASWSGLTAGQEKEREPIARGGAAPAGGPAPQLASA SMRTATGARQNNTGMTDADLLDISAVLMSEDGPLDEWP* back to topmRNA from alignment at L-elsbetiae_contig8187:2661..7247- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8187.17180.1 ID=mRNA_L-elsbetiae_contig8187.17180.1|Name=mRNA_L-elsbetiae_contig8187.17180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4587bp|location=Sequence derived from alignment at L-elsbetiae_contig8187:2661..7247- (Laminarionema elsbetiae ELsaHSoW15) GGGCACTAAGCGATGGGCTGTATTTTCTGGATGTGTATCTTGTTTTTTGC
TAGTGTTTTGCATCTTCACCGATATTGCCTGCCCAAAACCAAATAATTAA
TTAATTCATAAAAAAAACACACTAGATCTATATATCATATTTTCTGGTGT
AGAGATGTTCGTCTCTTTTCTTGTGTGGCTGGTTTTTGTGTACCTGACTG
ATGGGTAGCCTGTGGCAAAGAAGATGTTTGTCCCCTGTCAGAGTTGGAAC
AGCGGTACAGCTTTGTCAGGTGGTGACGATATATATGCCGGCAATATTTT
GAACCTGAGAACGACTACTGGCAAAACAAAACGTTGCCATGCAACATTAC
CCACTTCTGGAAGTACATAAGCGGCTGCAGCAACTAACTTGGTTATTATT
GCAGCGACTTTCACCCCCCTACTGCCATGTTGTGATCGTTAAGTTTATGG
CTTTCTCGTTTATCGCACTAGTATCCCTGCTGCAACGGCGCGTCCTTTGA
CGTACTATGTTACACCTCCTAGACCCCGGGGACGGTGAGTTATCGTCCCC
GGAATCTTAAAGACGGCTCCCCGCGTTAGAGGCGCTTTGAAAAAAACAAC
GATGTACGTCTTTTGAAGCGGGGTCGACTACTGTACTACTACGGGCCGCC
AGGATGTTTTCCCTCGTGTGGGATTTTCTCGTTCGAATTTAGTTCGCATC
CTTTTTTCTTTCTTTCGCCGAGCGCAGTAGGGCTACTGCTGCCGAAGACG
CTGAGATCGGCGTCCCCCCAGATGCATCAGCCACTCTCACCCGTGGCGTA
GAGTACTGTTTTCGGTACTGTATCTGGATCTCATCGGGAGAGGCGCCCAC
ATACGCATGATCGTAAGCAGGTCGCACAGTTTGTAGTTCCGTTTGCACGA
GAAGTTGCCGAAGTACGATTGATTGCGCGAAAAAAGGGGTACCAGCTAGC
GCTTCTCCCTCTTCGGTAGTCAATGGCATTCCCTCAGCTTCTCCTCAGAA
CGTGTGTGCTCTCGGGCGACCCCTTGCTTCACATGTAGGTGCCTCAAAGT
CAACATTGAAACTGCCCTGGGCCCAGGGCAATCTATCCTGTATACATGCG
TAAATATTCAGCTTTATTTATCGTTGGTGTTTTGTATTTGTTTTCTTGTT
GATGAGGCGCATCACCGCTTTTGCAGTCTTCAATAGCATACGCCCCCTTT
TCCTTTTCCGGTGGGCCCCTTTCCTGCTTGCAACCAATCCCTTTGTTGCT
TCCCATCCTCGCCGCCCTCTCTCTCCCAGGCCTCATTTGTTTCACTGCAT
CCTCGCCGGGAGCCACGCTATGGATCGAGGCATGTACGATTCGATTCGGG
CGGCGTACAACTCTATAGGCCACGTGGGATGTCGGCCGGCGCCGCCTTTC
GAAGAGTGGAGTGGGATGAGTCAGCTCTGCGATCACGTCTTTTGCCGGTA
CTAAATTATTTGTCAAGTGTCGTTCATTCGTCGTACCTCATCCTCGACTC
AGATCGTGCTTTTGCTAGTTGTTCCGAGTGATATCAAATGTTACGGGGGC
AGATTGGAACCCTGGATTCCAATCTGCTTGGGGCACGCAGACGAATTTGT
TTTGGCTGGGAATCGCTCTTTTTTGCTCAGGGCTCGCCTCCCAGACACCC
GTTTGCAGCCGAACCAACAGGAATGTGTGCTCCAATGGCGCGACTGTCTA
GGAGCCAAGTTTGGGGAGCAACGGCGAGGTGTGGGCCTCACACGCTTTGA
AACCCAAGAATTCCAAACTGGAATTCCGCGTTGGAATCCGGGCGAGTTTC
CCAATTTCCCAACAGAGAATACTCCGCGGTTCCAATTTGGAATCTTTTGG
TTTCAAAGCGTGTGAGGCCCACACCTCACCGTTGCTTCCCAAACTTGGCT
CCGAGACAGTCACGCCATTGGAGCACACATTCCGGTTGGTTGGCTGCAAA
CGGGTGTCTGGGAGGCGAGCCCTGAGCAAAAAAGAGCGATTCCCACATCA
TCTGCGTGCCCCCAGCGGATTGCAATCCTGGATTCCAATCTGCTCCCATA
ACACTTGGCCTGAAATCTAGTTGCCCGATAGGCCCCGTACCCAGGCCCCG
CGTCTGTTGTACCTCTGCATGTAGACGGTTGTCGATGAAGCTGGCGAAAC
AACTTTTTGCTTGGTTTCCCGGCTATCGGAGGGTGGGCTTTCGCAACTCA
CCACCGCACTGCAACTAGTAGATCATCAGCTGCGCCTGGCACTCGGATCT
GATTTATAGCTCTGGTGTTGAAAACAAGGCACCCACCGCGGGCGCCTTGC
TTTGGTAATGTTCGTGTTCCCCTCTGCCCTTCCGACCTTTGCCCTGCCTG
GGGAGCTATTCCTTGTTCTTGAGGTAGAGATGGGCGTAGCAGATATTGGT
TCGACGTGGATGTGACATGGTTAGAGTGGCGCACACAGAAAAAGCACACG
ATCGCTCGACGCTACAAGATGAAGCTCGCAGCCTTCTAGAGAAGACAATC
CGACCGAGTCATGCCGATACGCATTTCGAGTAGGAATACTCCGGCGTGGG
ACCGATGCGTGAGCTGTCGTGACCTACCGGGTACAGCATATGTGCACTCC
TCCCTTCTTAACTCCCGGTCGCGCCGCCCTATCCTGCACCCTCGAACAGG
TCCATGGAGCGGGAGGTTCACATCATCCACAACACGGAGCCGCTCGTCGA
GCCCACTGACCAGGGACTGGTCGAGGGGCTACCATCTTCCCTTAATGATG
CTGTATCGTCCCGGACCGGATTGCAAGCAGGGTCTGGGGGTAGAACCGGA
TTGCAAGCAGGGTCTGGGGGTAGGACCGGATTGCAAGCAGGGTCTAAGGG
TAGGACCGGATTGCAAGCAGGGTCTAAGGGTAGGACCGGATTGCAAGTGG
ATGTGGGTAGGGTGCACAACAGCGCAAGTGGCCCGGTGCATGCGGGGCCA
GTACTGGTGGAGGCTGACGTGGTGTCTTCCACGGAACCCCCGCACTTCCA
AAAAAGTACAGCAAAGCAATACGGCGGCAGCAGCGCCGTGTCCGGGGGCG
GTGCTGCTCCTCAGGGTTACAGGTACAACCTCGCCGATCCCGTGGCAACG
AACAGGCTTGCCCCGGTGCCCGCATACCCTGTGGCTGCTGCGGCCAGCGC
CAGCTGGTCGGGTTTGACCGCCGGGCAGGAAAAGGAACGGGAACCCATTG
CTCGGGGGGGCGCAGCTCCCGCAGGCGGTCCCGCGCCACAGCTGGCATCG
GCGTCCATGCGAACAGCAACGGGGGCAAGGCAAAATAACACGGGCATGAC
AGATGCGGATCTGTTGGATATTTCAGCAGTGCTGATGAGCGAAGATGGGC
CGCTGGATGAGTGGCCGTAGAAGCAACCTGACGCTGATGTTGACGTGGAT
TGAAACTGGTGGAGATTTGAGATCTGATGCTTTAACGGTGTTTAACGGTG
TTTTTATTTCTTTGCATGTCGCTTTTTTTATCATTTGTAATGTTTTGCTG
CCATCCATGTTGTTGTGTCTTCGGTGTTAATTTACGCACCCGGTCGGCTG
ATGCCCGTTGAAGATTGCATTCGAATGTGTGTGCGTGTGTGTCCTTCCCA
TTTATTCGAATACTGTTTTTTTTGGAAATCAACACACCTTTGTTCTGTAT
TTTCGTTCAGTTGAGGGCGCTTGAATGGTTTGTTTTATATTACGTGCGTG
TCTTGATAGCCGCACTGATGTAGCGCGGCAAATTCTTTTCGGTTCAGAAA
GTATGCCTTGTGTCGATAGGAAGTAGACTCGGCGCATGGCTGGAAGGCGT
TGGATTGTAGTTTAGCACAGTAGGGCGCCCTTCAAAAGTGCAATGTCTTT
TGGTACAACTCAAGGCTTGCCAAAGCAACAACCTAACATGTATGAAGACC
CCCCGAGCGTCACAACGCGCCCGAAGACGATTGACTGGTAGCATCTAGCC
TTTTGTTTTCTGTGCTTTGCGGACCCTTTGGGTCCATTTTATTTATTCTC
TGTTTTCAGTTAAACCTTCTAGGGTGAGTTATCCTGTGACCACGGGAATC
GACTGCGTCAGGGTTGGGTTAGTTTCGGGGTTCGTCCAAGGTTGGCCGGG
AGAGGGGAAAGAGAGAGATACTGCTGCTGTCCCACCAGTAAAACAATCAC
AATCATTAAACGAGGTGGTTCATCGGTTCGGCAATTTGAACCATCTGCCT
CCCGCTGTCCCTCGCCTGGCATGTTGATCGCTGCTGGCGTGATCTATAGA
CCTCGGTTCGGATGGTGTTGAGCGTTCCATGGGCGTACGTGGATTGTCTA
CAACGTCACACGGGCAAAAGTGTTGTACTATTGTATGCTTTTAGATGGCC
TGCTTCGGTCTTTATGTGTGTACATATAGTCTGAGCTCAACAAGGAGCAA
CAGTAGTAGTCGTGTGTCTTACAGCAGTGAGAACCCATCTCTTGTCAAGT
TTCGGGATTGCAAAGGGATCCTCATAAACAGGGCGACCGGATTCGAAAAA
GCGTGAGCGTGTTCTGGTCCTGTAGTCCTATCTGTACGTGTAGGTGAAAT
GGAGTGTCTATGCGGAATCAAATCGCGTCCATTCCGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8187:2661..7247- >mRNA_L-elsbetiae_contig8187.17180.1 ID=mRNA_L-elsbetiae_contig8187.17180.1|Name=mRNA_L-elsbetiae_contig8187.17180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2034bp|location=Sequence derived from alignment at L-elsbetiae_contig8187:2661..7247- (Laminarionema elsbetiae ELsaHSoW15) ATGAGGCGCATCACCGCTTTTGCAGTCTTCAATAGCATACGCCCCCTTTT CCTTTTCCGGTGGGCCCCTTTCCTGCTTGCAACCAATCCCTTTGTTGCTT CCCATCCTCGCCGCCCTCTCTCTCCCAGGCCTCATTTGTTTCACTGCATC CTCGCCGGGAGCCACGCTATGGATCGAGGCATGTACGATTCGATTCGGGC GGCGTACAACTCTATAGGCCACGTGGGATGTCGGCCGGCGCCGCCTTTCG AAGAGTGGAGTGGGATGAGTCAGCTCTGCGATCACGTCTTTTGCCGATGA GGCGCATCACCGCTTTTGCAGTCTTCAATAGCATACGCCCCCTTTTCCTT TTCCGGTGGGCCCCTTTCCTGCTTGCAACCAATCCCTTTGTTGCTTCCCA TCCTCGCCGCCCTCTCTCTCCCAGGCCTCATTTGTTTCACTGCATCCTCG CCGGGAGCCACGCTATGGATCGAGGCATGTACGATTCGATTCGGGCGGCG TACAACTCTATAGGCCACGTGGGATGTCGGCCGGCGCCGCCTTTCGAAGA GTGGAGTGGGATGAGTCAGCTCTGCGATCACGTCTTTTGCCGGTCCATGG AGCGGGAGGTTCACATCATCCACAACACGGAGCCGCTCGTCGAGCCCACT GACCAGGGACTGGTCGAGGGGCTACCATCTTCCCTTAATGATGCTGTATC GTCCCGGACCGGATTGCAAGCAGGGTCTGGGGGTAGAACCGGATTGCAAG CAGGGTCTGGGGGTAGGACCGGATTGCAAGCAGGGTCTAAGGGTAGGACC GGATTGCAAGCAGGGTCTAAGGGTAGGACCGGATTGCAAGTGGATGTGGG TAGGGTGCACAACAGCGCAAGTGGCCCGGTGCATGCGGGGCCAGTACTGG TGGAGGCTGACGTGGTGTCTTCCACGGAACCCCCGCACTTCCAAAAAAGT ACAGCAAAGCAATACGGCGGCAGCAGCGCCGTGTCCGGGGGCGGTGCTGC TCCTCAGGGTTACAGGTACAACCTCGCCGATCCCGTGGCAACGAACAGGC TTGCCCCGGTGCCCGCATACCCTGTGGCTGCTGCGGCCAGCGCCAGCTGG TCGGGTTTGACCGCCGGGCAGGAAAAGGAACGGGAACCCATTGCTCGGGG GGGCGCAGCTCCCGCAGGCGGTCCCGCGCCACAGCTGGCATCGGCGTCCA TGCGAACAGCAACGGGGGCAAGGCAAAATAACACGGGCATGACAGATGCG GATCTGTTGGATATTTCAGCAGTGCTGATGAGCGAAGATGGGCCGCTGGA TGAGTGGCCGTAGGTCCATGGAGCGGGAGGTTCACATCATCCACAACACG GAGCCGCTCGTCGAGCCCACTGACCAGGGACTGGTCGAGGGGCTACCATC TTCCCTTAATGATGCTGTATCGTCCCGGACCGGATTGCAAGCAGGGTCTG GGGGTAGAACCGGATTGCAAGCAGGGTCTGGGGGTAGGACCGGATTGCAA GCAGGGTCTAAGGGTAGGACCGGATTGCAAGCAGGGTCTAAGGGTAGGAC CGGATTGCAAGTGGATGTGGGTAGGGTGCACAACAGCGCAAGTGGCCCGG TGCATGCGGGGCCAGTACTGGTGGAGGCTGACGTGGTGTCTTCCACGGAA CCCCCGCACTTCCAAAAAAGTACAGCAAAGCAATACGGCGGCAGCAGCGC CGTGTCCGGGGGCGGTGCTGCTCCTCAGGGTTACAGGTACAACCTCGCCG ATCCCGTGGCAACGAACAGGCTTGCCCCGGTGCCCGCATACCCTGTGGCT GCTGCGGCCAGCGCCAGCTGGTCGGGTTTGACCGCCGGGCAGGAAAAGGA ACGGGAACCCATTGCTCGGGGGGGCGCAGCTCCCGCAGGCGGTCCCGCGC CACAGCTGGCATCGGCGTCCATGCGAACAGCAACGGGGGCAAGGCAAAAT AACACGGGCATGACAGATGCGGATCTGTTGGATATTTCAGCAGTGCTGAT GAGCGAAGATGGGCCGCTGGATGAGTGGCCGTAG back to top
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