mRNA_L-elsbetiae_contig8181.17178.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8181.17178.1
Unique NamemRNA_L-elsbetiae_contig8181.17178.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8181.17178.1 vs. uniprot
Match: D7FS68_ECTSI (RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS68_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.600e-23
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 QVPGYFYANDRLEELTFEELKQQSGGKGGGGFLPAVKQIANVAALPGIVK 150
            +VPGYFYANDRLE+LTFEEL+QQSGGKGGGGFLPAVKQIANVAALPG+VK
Sbjct:   31 KVPGYFYANDRLEKLTFEELRQQSGGKGGGGFLPAVKQIANVAALPGVVK 80
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BLAST of mRNA_L-elsbetiae_contig8181.17178.1 vs. uniprot
Match: A0A2C9KM53_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9KM53_BIOGL)

HSP 1 Score: 73.6 bits (179), Expect = 6.720e-16
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 QVPGYFYANDRLEELTFEELKQQSGGKGGGGFLPAVKQIANVAALPGIV 147
            +V GYFYAN  LE+L F+ELKQ    KG GGFLP +KQIANVAALPGIV
Sbjct:   38 KVDGYFYANPSLEKLMFDELKQSCNSKGFGGFLPGMKQIANVAALPGIV 86
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BLAST of mRNA_L-elsbetiae_contig8181.17178.1 vs. uniprot
Match: A0A7S1GE03_9STRA (RNA-splicing ligase RtcB homolog n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GE03_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.940e-15
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 QVPGYFYANDRLEELTFEELKQQSGGKGGGGFLPAVKQIANVAALPGIVK 150
            +VPG FY NDRLE L F+ELKQ S   G GGFLPA+KQ+ANVAALPGIVK
Sbjct:   38 RVPGVFYVNDRLESLMFDELKQFSTASGVGGFLPAMKQLANVAALPGIVK 87
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BLAST of mRNA_L-elsbetiae_contig8181.17178.1 vs. uniprot
Match: A0A8C4S595_ERPCA (RNA-splicing ligase RtcB homolog n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4S595_ERPCA)

HSP 1 Score: 77.4 bits (189), Expect = 2.640e-15
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 QVPGYFYANDRLEELTFEELKQQSGGKGGGGFLPAVKQIANVAALPGIV 147
            QV G FY N+ LE+LTF+EL+Q +GG+G GGFLPAVKQI+NVAALPGIV
Sbjct:   31 QVEGIFYVNEPLEKLTFDELQQAAGGEGHGGFLPAVKQISNVAALPGIV 79
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BLAST of mRNA_L-elsbetiae_contig8181.17178.1 vs. uniprot
Match: UPI00077AE157 (tRNA-splicing ligase RtcB homolog n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AE157)

HSP 1 Score: 72.4 bits (176), Expect = 3.390e-15
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 QVPGYFYANDRLEELTFEELKQQSGGKGGGGFLPAVKQIANVAALPGIVKVE 156
            +V G FY ND LE+L F+ELK  +G +G GGFLP VKQIANVAALPGIV V 
Sbjct:   34 KVEGIFYINDHLEKLMFDELKHWAGTQGVGGFLPGVKQIANVAALPGIVGVR 85
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BLAST of mRNA_L-elsbetiae_contig8181.17178.1 vs. uniprot
Match: UPI00155F371B (tRNA-splicing ligase RtcB homolog n=1 Tax=Etheostoma cragini TaxID=417921 RepID=UPI00155F371B)

HSP 1 Score: 73.2 bits (178), Expect = 6.530e-15
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 QVPGYFYANDRLEELTFEELKQQSGGKGG-GGFLPAVKQIANVAALPGIV 147
            QV G FY N+ LE+L FEEL+Q  GG+GG GGFLPA+KQI NVAALPGIV
Sbjct:   31 QVEGIFYVNEPLEKLMFEELRQACGGRGGVGGFLPAMKQIGNVAALPGIV 80
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BLAST of mRNA_L-elsbetiae_contig8181.17178.1 vs. uniprot
Match: UPI000C04ECA2 (tRNA-splicing ligase RtcB homolog n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C04ECA2)

HSP 1 Score: 71.2 bits (173), Expect = 6.590e-15
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 QVPGYFYANDRLEELTFEELKQQSGGKGGGGFLPAVKQIANVAALPGIVKVE 156
            +V G FY ND LE+L F+ELK  +G +G GGFLP VKQIANVAALPGIV V 
Sbjct:   34 KVEGIFYINDLLEKLMFDELKHWAGTQGIGGFLPGVKQIANVAALPGIVGVR 85
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BLAST of mRNA_L-elsbetiae_contig8181.17178.1 vs. uniprot
Match: A0A0B7ASC0_9EUPU (RNA-splicing ligase RtcB homolog n=6 Tax=Gastropoda TaxID=6448 RepID=A0A0B7ASC0_9EUPU)

HSP 1 Score: 76.3 bits (186), Expect = 6.740e-15
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 QVPGYFYANDRLEELTFEELKQQSGGKGGGGFLPAVKQIANVAALPGIVK 150
            +V GYFY ND LE+L F+ELKQ    KG GGFLP +KQIANVAALPGIV 
Sbjct:   30 KVDGYFYVNDNLEKLMFDELKQSCNSKGFGGFLPGIKQIANVAALPGIVS 79
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BLAST of mRNA_L-elsbetiae_contig8181.17178.1 vs. uniprot
Match: A0A8D0NZK9_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0NZK9_PIG)

HSP 1 Score: 71.6 bits (174), Expect = 7.160e-15
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 QVPGYFYANDRLEELTFEELKQQSGGKGGGGFLPAVKQIANVAALPGIVKVE 156
            QV G FY ND LE+L FEEL+    G G GGFLPA+KQI NVAALPGIV V 
Sbjct:   31 QVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHVS 82
[Close]
BLAST of mRNA_L-elsbetiae_contig8181.17178.1 vs. uniprot
Match: UPI001EE53F97 (RNA-splicing ligase RtcB homolog n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE53F97)

HSP 1 Score: 75.5 bits (184), Expect = 1.260e-14
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 QVPGYFYANDRLEELTFEELKQQSGGKGGGGFLPAVKQIANVAALPGIVK 150
            +V GYFY NDRLE+L F+ELK     KG GGFLP +KQIANVAALPGIV 
Sbjct:   30 KVDGYFYTNDRLEKLMFDELKHSCNSKGFGGFLPGMKQIANVAALPGIVS 79
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8181.17178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS68_ECTSI1.600e-2392.00RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpu... [more]
A0A2C9KM53_BIOGL6.720e-1671.43Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A7S1GE03_9STRA1.940e-1574.00RNA-splicing ligase RtcB homolog n=1 Tax=Bicosoeci... [more]
A0A8C4S595_ERPCA2.640e-1573.47RNA-splicing ligase RtcB homolog n=2 Tax=Polypteri... [more]
UPI00077AE1573.390e-1567.31tRNA-splicing ligase RtcB homolog n=1 Tax=Acropora... [more]
UPI00155F371B6.530e-1572.00tRNA-splicing ligase RtcB homolog n=1 Tax=Etheosto... [more]
UPI000C04ECA26.590e-1567.31tRNA-splicing ligase RtcB homolog n=1 Tax=Stylopho... [more]
A0A0B7ASC0_9EUPU6.740e-1570.00RNA-splicing ligase RtcB homolog n=6 Tax=Gastropod... [more]
A0A8D0NZK9_PIG7.160e-1567.31Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
UPI001EE53F971.260e-1470.00RNA-splicing ligase RtcB homolog n=1 Tax=Haliotis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8181contigL-elsbetiae_contig8181:4947..5105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue4.2e-19
Seed eggNOG ortholog2880.D7FS68
Preferred nameRTCB
KEGG koko:K14415
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000378,GO:0000394,GO:0000968,GO:0000971,GO:0001701,GO:0001890,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0003972,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0008033,GO:0008092,GO:0008150,GO:0008152,GO:0008380,GO:0008452,GO:0009790,GO:0009791,GO:0009792,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0016020,GO:0016070,GO:0016874,GO:0016886,GO:0017166,GO:0019219,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0031323,GO:0031325,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0040025,GO:0042175,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048569,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051704,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0072669,GO:0080090,GO:0090304,GO:0098827,GO:0140098,GO:1901360,GO:1903326,GO:1903328,GO:2000235,GO:2000237
EggNOG free text desc.RNA ligase (ATP) activity
EggNOG OGsCOG1690@1,KOG3833@2759
EC6.5.1.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Ec32 ortholog descriptiontRNA-splicing ligase, RtcB
Ec32 orthologEc-01_000760.1
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.2317712-CDS-L-elsbetiae_contig8181:4946..51051622816902.2317712-CDS-L-elsbetiae_contig8181:4946..5105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8181 4947..5105 -
1691683899.3575046-CDS-L-elsbetiae_contig8181:4946..51051691683899.3575046-CDS-L-elsbetiae_contig8181:4946..5105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8181 4947..5105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8181.17178.1prot_L-elsbetiae_contig8181.17178.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8181 4947..5105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8181.17178.1

>prot_L-elsbetiae_contig8181.17178.1 ID=prot_L-elsbetiae_contig8181.17178.1|Name=mRNA_L-elsbetiae_contig8181.17178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
QVPGYFYANDRLEELTFEELKQQSGGKGGGGFLPAVKQIANVAALPGIVK
VE*
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mRNA from alignment at L-elsbetiae_contig8181:4947..5105-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8181.17178.1 ID=mRNA_L-elsbetiae_contig8181.17178.1|Name=mRNA_L-elsbetiae_contig8181.17178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=159bp|location=Sequence derived from alignment at L-elsbetiae_contig8181:4947..5105- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGCCAGGGTACTTCTACGCCAACGACCGGCTGGAGGAGCTGACTTT
CGAAGAGCTCAAGCAGCAGTCCGGCGGGAAGGGGGGCGGAGGCTTTCTGC
CCGCGGTGAAGCAGATCGCCAACGTCGCGGCGTTGCCCGGGATAGTCAAG
GTTGAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8181:4947..5105-

>mRNA_L-elsbetiae_contig8181.17178.1 ID=mRNA_L-elsbetiae_contig8181.17178.1|Name=mRNA_L-elsbetiae_contig8181.17178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig8181:4947..5105- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGCCAGGGTACTTCTACGCCAACGACCGGCTGGAGGAGCTGACTTT
CGAAGAGCTCAAGCAGCAGTCCGGCGGGAAGGGGGGCGGAGGCTTTCTGC
CCGCGGTGAAGCAGATCGCCAACGTCGCGGCGTTGCCCGGGATAGTCAAG
GTTGAGTGACAGGTGCCAGGGTACTTCTACGCCAACGACCGGCTGGAGGA
GCTGACTTTCGAAGAGCTCAAGCAGCAGTCCGGCGGGAAGGGGGGCGGAG
GCTTTCTGCCCGCGGTGAAGCAGATCGCCAACGTCGCGGCGTTGCCCGGG
ATAGTCAAGGTTGAGTGA
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