mRNA_L-elsbetiae_contig818.17175.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig818.17175.1
Unique NamemRNA_L-elsbetiae_contig818.17175.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig818.17175.1 vs. uniprot
Match: D7FSQ2_ECTSI (RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ2_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 1.480e-91
Identity = 157/190 (82.63%), Postives = 164/190 (86.32%), Query Frame = 1 
Query:    4 VAPSKFSGDALDVLTAQIEAKFADRVIANVGLCVCLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILAGKVSACSKQGIKVSLDFFEKASIPKDLLQSPSVFTRGEWLWSYPDPDAEEGXXXXXXXXXXGENGGGAEGGEEAFSLALHDEVRFRVRTLEFTQVTSTAAGRLQATTVSTARGGGG 573
            VAPSKFSGDALDVLTAQIEAKFADRVIANVGLC+CLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEIL GKVS+C+KQGIKVSLDFFE ASIPKDLLQSPSVF RGEW+WS         XXXXXXXXXX       E  +++FSL LHDEVRFRVRTLEFTQVTSTA G LQATTVSTARG  G
Sbjct:   30 VAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGEWMWSXXXXXXXXXXXXXXXXXXXXXXXXXXEN-DDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAG 218
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BLAST of mRNA_L-elsbetiae_contig818.17175.1 vs. uniprot
Match: A0A835YK61_9STRA (RNA polymerase III subunit Rpc25-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK61_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.160e-52
Identity = 93/193 (48.19%), Postives = 126/193 (65.28%), Query Frame = 1 
Query:    1 QVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCVCLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILAGKVSACSKQGIKVSLDFFEKASIPKDLLQSPSVFTRGE--WLWSYPDPDAEEGXXXXXXXXXXGENGGGAEGGEEAFSLALHDEVRFRVRTLEFTQVTSTAAGRLQATTVSTARGGGG 573
            +V P  F    LDVLT  ++ K++++VI NVGL +CLHS+ES+GD  VYPSDG+AHY+  FR+L+FRPFVGE+L GK+  CS+ GI VS+ FFE  +IPK LL  PSV+ +    W+W Y D DA+                      ++++ + + DE+RFRVRTL+FT+V +TA G  QATTVST   GGG
Sbjct:   12 KVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNP----------------DDSYIMQVGDEIRFRVRTLDFTEVVNTANG-YQATTVSTGPQGGG 187
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BLAST of mRNA_L-elsbetiae_contig818.17175.1 vs. uniprot
Match: A0A6V1SWR7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SWR7_HETAK)

HSP 1 Score: 161 bits (408), Expect = 1.330e-46
Identity = 89/190 (46.84%), Postives = 118/190 (62.11%), Query Frame = 1 
Query:    1 QVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCVCLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILAGKVSACSKQGIKVSLDFFEKASIPKDLLQSPSVFTRGE--WLWSYPDPDAEEGXXXXXXXXXXGENGGGAEGGEEAFSLALHDEVRFRVRTLEFTQVTSTAAGRLQATTVSTARG 564
            ++ PS F  + +  LT +I+ K+A++VI +VGLC+CL  +E IGD Y+YP DG+AHYK  FR+LVFRPFVGEI+ G++S+ SK+GIKVSL F +   +P  LLQ+PS F   E  W W Y D D E                       +   + + D  RFRVRTL+FTQV +TA G LQA TVST+ G
Sbjct:   12 KIHPSAFDKNQIQALTEEIDHKYANKVILDVGLCICLFDFEHIGDAYIYPLDGSAHYKATFRLLVFRPFVGEIITGRISSQSKEGIKVSLGFTDDIIVPSYLLQAPSQFDPEERAWTWKYQDEDGEA----------------------QDMLMEVGDACRFRVRTLDFTQVKATAKG-LQAHTVSTSVG 178
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BLAST of mRNA_L-elsbetiae_contig818.17175.1 vs. uniprot
Match: A0A067CHA1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHA1_SAPPC)

HSP 1 Score: 150 bits (380), Expect = 5.460e-42
Identity = 78/186 (41.94%), Postives = 116/186 (62.37%), Query Frame = 1 
Query:    1 QVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCVCLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILAGKVSACSKQGIKVSLDFFEKASIPKDLLQSPSVFTRGEWLWSYPDPDAEEGXXXXXXXXXXGENGGGAEGGEEAFSLALHDEVRFRVRTLEFTQVTSTAAGRLQATTVSTA 558
            Q+AP  F  D   VLT +I+ K+A++VIA+VGLC+ L+ +  IGD Y++PSDG +H +V FRM+VF+PF+GE+L GK+ +C+++ I+VS+DF +   IP   +Q+PS F + E LW +  P                    G E  ++ + + LH+EVRFRV  + FT+VT TA G +QAT    A
Sbjct:   12 QIAPELFGTDYSSVLTEEIDRKYANKVIADVGLCITLYDFIEIGDAYIHPSDGTSHTEVVFRMVVFQPFIGEVLKGKIISCTEEHIRVSMDFVQDIIIPSYAMQTPSFFDKNERLWEWKFP--------------------GKEDEQDPYYMYLHEEVRFRVTNINFTRVTKTAKG-IQATVTEAA 176
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BLAST of mRNA_L-elsbetiae_contig818.17175.1 vs. uniprot
Match: A0A7S3H250_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H250_9STRA)

HSP 1 Score: 150 bits (379), Expect = 7.930e-42
Identity = 81/192 (42.19%), Postives = 114/192 (59.38%), Query Frame = 1 
Query:    1 QVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCVCLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILAGKVSACSKQGIKVSLDFFEKASIPKDLLQSPSVFTR--GEWLWSYPDPDAEEGXXXXXXXXXXGENGGGAEGGEEAFSLALHDEVRFRVRTLEFTQVTSTAAGRLQATTVSTARGGG 570
            + AP +F  DA +VL  QIE K+A+RV+ +VGLC+  + + SIGDPY+YPS+G+A   VRFRM+VFRPFVGEI+ G++ +  ++G+K+S +FFE   IP  LLQ+P V+    G W W Y +P                         E  F + + +EVRF+VRTL FTQ++S+  G    TT  T    G
Sbjct:    5 KTAPDQFGRDAAEVLKEQIEIKYANRVLLHVGLCITFYDFISIGDPYLYPSEGSAIQIVRFRMVVFRPFVGEIITGRLVSSGREGLKISTEFFEDILIPAALLQAPCVYNPVDGLWTWKYGEP-------------------------ENDFLMDIGEEVRFKVRTLTFTQLSSSVKGLTATTTSETGNDAG 171
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BLAST of mRNA_L-elsbetiae_contig818.17175.1 vs. uniprot
Match: M4BL76_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BL76_HYAAE)

HSP 1 Score: 148 bits (373), Expect = 2.430e-41
Identity = 78/179 (43.58%), Postives = 106/179 (59.22%), Query Frame = 1 
Query:    4 VAPSKFSGDALDVLTAQIEAKFADRVIANVGLCVCLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILAGKVSACSKQGIKVSLDFFEKASIPKDLLQSPSVFTRGE--WLWSYPDPDAEEGXXXXXXXXXXGENGGGAEGGEEAFSLALHDEVRFRVRTLEFTQVTSTAAGRL 534
            VAPS F  D   VL  +I+ K+A++VIA+VGLCV L+ +  IGD +V+PSDG +H  V FRM+VFRPFVGE+L G++  C+ + I+VS+DF +   IP   LQ+PS +   E  W+W Y D   E                       E F + LH+E+RFRV  + FT+VT TA G L
Sbjct:   13 VAPSLFDADYTQVLIEEIDRKYANKVIADVGLCVTLYDFVRIGDAFVHPSDGTSHSHVEFRMIVFRPFVGEVLKGRIVGCTDEHIRVSMDFVQDIIIPSYALQTPSYYDTAEKLWVWKYSDGQGEGVPQTWSRCLAV-----------EKFYMDLHEEIRFRVTNINFTRVTKTAKGEL 180
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BLAST of mRNA_L-elsbetiae_contig818.17175.1 vs. uniprot
Match: A0A8K1CBB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBB5_PYTOL)

HSP 1 Score: 147 bits (370), Expect = 2.170e-40
Identity = 77/183 (42.08%), Postives = 114/183 (62.30%), Query Frame = 1 
Query:    4 VAPSKFSGDALDVLTAQIEAKFADRVIANVGLCVCLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILAGKVSACSKQGIKVSLDFFEKASIPKDLLQSPSVFTRGE--WLWSYPDPDAEEGXXXXXXXXXXGENGGGAEGGEEAFSLALHDEVRFRVRTLEFTQVTSTAAGRLQATT 546
            VAP  F  D   VL  +I+ K+A++VIA+VGLC+ ++ +  IGD +V+PSDG +H +V FRM+VFRPFVGE+L G++ +C+++ I+VS+DF +   IP   +Q+PS F   E  W+W Y +                         G+E F + LH+E+RFRV ++ FT+VT TA G +QATT
Sbjct:   13 VAPDLFEEDYQKVLVEEIDRKYANKVIADVGLCISIYDFVHIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCNEEHIRVSMDFVQDIIIPSYAMQTPSYFDTTERLWVWKYSE-------------------------GQEKFFMDLHEEIRFRVTSINFTRVTKTAHG-IQATT 169
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BLAST of mRNA_L-elsbetiae_contig818.17175.1 vs. uniprot
Match: K3WAI2_GLOUD (Uncharacterized protein n=21 Tax=Oomycota TaxID=4762 RepID=K3WAI2_GLOUD)

HSP 1 Score: 146 bits (368), Expect = 3.660e-40
Identity = 76/183 (41.53%), Postives = 112/183 (61.20%), Query Frame = 1 
Query:    4 VAPSKFSGDALDVLTAQIEAKFADRVIANVGLCVCLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILAGKVSACSKQGIKVSLDFFEKASIPKDLLQSPSVFTRGE--WLWSYPDPDAEEGXXXXXXXXXXGENGGGAEGGEEAFSLALHDEVRFRVRTLEFTQVTSTAAGRLQATT 546
            V P  F  D   VL  +I+ K+A++VIA+VGLC+ ++ +  IGD +V+PSDG +H +V FRM+VFRPFVGE+L G++ +C+++ I+VS+DF +   IP   LQ+PS F   E  W+W Y +                         G+E F + +H+E+RFRV  + FT+VT TA G +QATT
Sbjct:   13 VNPELFDADYTKVLVEEIDRKYANKVIADVGLCITIYDFVHIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYSE-------------------------GQEKFYMDMHEEIRFRVTNINFTRVTKTANG-IQATT 169
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BLAST of mRNA_L-elsbetiae_contig818.17175.1 vs. uniprot
Match: A0A6G0XPV7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPV7_9STRA)

HSP 1 Score: 145 bits (367), Expect = 5.620e-40
Identity = 76/182 (41.76%), Postives = 114/182 (62.64%), Query Frame = 1 
Query:    1 QVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCVCLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILAGKVSACSKQGIKVSLDFFEKASIPKDLLQSPSVFTRGEWLWSYPDPDAEEGXXXXXXXXXXGENGGGAEGGEEAFSLALHDEVRFRVRTLEFTQVTSTAAGRLQATT 546
            QVAP  F+ D   VL  +I+ K+A++VIA+VGLC+  + +  IGD Y++PSDG +H +V FRM+VFRPF+GEIL GK+ +C+++ I+VS+DF +   IP   +Q+PS F + E LW +  P  EEG                    ++ + + L++E+RFRV  + FT+V  TA G +QA T
Sbjct:   12 QVAPEFFAADYSSVLIEEIDRKYANKVIADVGLCITHYDFIEIGDAYIHPSDGTSHTEVIFRMVVFRPFIGEILKGKIISCTEEHIRVSMDFVQDIIIPSYAMQNPSFFDKTERLWEWKFPGREEG--------------------QDPYYMYLNEEIRFRVTNINFTRVLKTATG-IQAVT 172
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BLAST of mRNA_L-elsbetiae_contig818.17175.1 vs. uniprot
Match: A0A1V9Z282_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z282_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.000e-39
Identity = 78/181 (43.09%), Postives = 116/181 (64.09%), Query Frame = 1 
Query:    1 QVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCVCLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILAGKVSACSKQGIKVSLDFFEKASIPKDLLQSPSVFTRGEWLWSYPDPDAEEGXXXXXXXXXXGENGGGAEGGEEAFSLALHDEVRFRVRTLEFTQVTSTAAGRLQAT 543
            Q+AP  FS D   VLT +I+ K+A++VIA+VGLC+ L+ +  IGD Y++PSDG +H +V FRM+VFRPF+GE+L GK+ +C+++ I+VS+DF +   IP   +Q+PS F + E LW +  P  E G                    ++ + + LH+E+RFRV  + FT+VT TA G +QAT
Sbjct:   12 QIAPELFSTDYSSVLTEEIDRKYANKVIADVGLCITLYDFIEIGDAYIHPSDGTSHTEVIFRMVVFRPFIGEVLKGKIISCTEEHIRVSMDFVQDIIIPSYAMQTPSFFDKNERLWEWKFPSKEPG--------------------QDPYYMYLHEEIRFRVTNINFTRVTKTANG-IQAT 171
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig818.17175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSQ2_ECTSI1.480e-9182.63RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ec... [more]
A0A835YK61_9STRA1.160e-5248.19RNA polymerase III subunit Rpc25-domain-containing... [more]
A0A6V1SWR7_HETAK1.330e-4646.84Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A067CHA1_SAPPC5.460e-4241.94Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A7S3H250_9STRA7.930e-4242.19Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
M4BL76_HYAAE2.430e-4143.58Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A8K1CBB5_PYTOL2.170e-4042.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WAI2_GLOUD3.660e-4041.53Uncharacterized protein n=21 Tax=Oomycota TaxID=47... [more]
A0A6G0XPV7_9STRA5.620e-4041.76Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9Z282_9STRA2.000e-3943.09Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig818contigL-elsbetiae_contig818:2119..7007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.1
Seed ortholog evalue1.1e-73
Seed eggNOG ortholog2880.D7FSQ2
Preferred namePOLR3H
KEGG rclassRC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273,RC02795
KEGG koko:K00121,ko:K03022
KEGG ReactionR00435,R00441,R00442,R00443,R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310
KEGG Pathwayko00010,ko00071,ko00230,ko00240,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko03020,ko04623,ko05169,ko05204,map00010,map00071,map00230,map00240,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map03020,map04623,map05169,map05204
KEGG ModuleM00181
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005694,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.transcription initiation from RNA polymerase III promoter
EggNOG OGsCOG1095@1,KOG3297@2759
EC1.1.1.1,1.1.1.284
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Ec32 ortholog descriptionRNA polymerase Rpb7, N-terminal
Ec32 orthologEc-03_002970.1
Exons5
Model size669
Cds size669
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig818.17175.1prot_L-elsbetiae_contig818.17175.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig818 2119..7007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816901.8108168-CDS-L-elsbetiae_contig818:2118..22801622816901.8108168-CDS-L-elsbetiae_contig818:2118..2280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig818 2119..2280 -
1691683899.002457-CDS-L-elsbetiae_contig818:2118..22801691683899.002457-CDS-L-elsbetiae_contig818:2118..2280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig818 2119..2280 -
1622816901.8220623-CDS-L-elsbetiae_contig818:3462..36431622816901.8220623-CDS-L-elsbetiae_contig818:3462..3643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig818 3463..3643 -
1691683899.0176377-CDS-L-elsbetiae_contig818:3462..36431691683899.0176377-CDS-L-elsbetiae_contig818:3462..3643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig818 3463..3643 -
1622816901.8361144-CDS-L-elsbetiae_contig818:4545..46101622816901.8361144-CDS-L-elsbetiae_contig818:4545..4610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig818 4546..4610 -
1691683899.0266285-CDS-L-elsbetiae_contig818:4545..46101691683899.0266285-CDS-L-elsbetiae_contig818:4545..4610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig818 4546..4610 -
1622816901.8493097-CDS-L-elsbetiae_contig818:5526..56131622816901.8493097-CDS-L-elsbetiae_contig818:5526..5613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig818 5527..5613 -
1691683899.0351636-CDS-L-elsbetiae_contig818:5526..56131691683899.0351636-CDS-L-elsbetiae_contig818:5526..5613Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig818 5527..5613 -
1622816901.8625312-CDS-L-elsbetiae_contig818:6833..70071622816901.8625312-CDS-L-elsbetiae_contig818:6833..7007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig818 6834..7007 -
1691683899.0438356-CDS-L-elsbetiae_contig818:6833..70071691683899.0438356-CDS-L-elsbetiae_contig818:6833..7007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig818 6834..7007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig818.17175.1

>prot_L-elsbetiae_contig818.17175.1 ID=prot_L-elsbetiae_contig818.17175.1|Name=mRNA_L-elsbetiae_contig818.17175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=223bp
QVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCVCLHSYESIGDPYVYP
SDGAAHYKVRFRMLVFRPFVGEILAGKVSACSKQGIKVSLDFFEKASIPK
DLLQSPSVFTRGEWLWSYPDPDAEEGEEGEGKGGAGGENGGGAEGGEEAF
SLALHDEVRFRVRTLEFTQVTSTAAGRLQATTVSTARGGGGAAGGATGGG
VGGRGREGGGAAGSGAEPPIMR*
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mRNA from alignment at L-elsbetiae_contig818:2119..7007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig818.17175.1 ID=mRNA_L-elsbetiae_contig818.17175.1|Name=mRNA_L-elsbetiae_contig818.17175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4889bp|location=Sequence derived from alignment at L-elsbetiae_contig818:2119..7007- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGCCCCAAGCAAGTTTAGCGGCGATGCTCTGGACGTGCTAACGGC
GCAGATAGAGGCCAAGTTCGCCGACAGGGTGATCGCCAACGTCGGCCTCT
GCGTGTGCCTGCACAGCTACGAGAGCATAGGGGACCCTTACGTCTACCCC
TCTGATGGCGCAGCGCACTACAAGGTATGGCGGGGGGGGGGGGGGGGGGG
GGGGGGGCTGGGGGGCCCGGGGGGGGGAGAGGGGGGGCGGGGGGGCGCCC
TCGCAGGGGTCCCCAACNNNNNNNNNNTGTGTCTCCATCGGCAGAGCCTG
GGGGCCCCCCTCCCCCTTCCCCCCCGGGGGCGCCGGTCGTTTTTGTTGGG
GGGGGGGGGGGGGGGGGGGGGGTCGTGCTGCTGTAGGCCTGCGGGTGAGC
ATAGATGCACGGCGAAGCTACCTGCATAGGTACCCAAACCCTTACCTTCT
GCTCCCGATTATTCGACCGTTTGAGTGCTGTGTATGTATGTACTGTTACC
TCTTCGGTCAAGGGTGCGTAGCGCGCGACGGAATATTTCCTCTTCTTGCA
GCTGGTGGTGTTACTGCAAATTAAATATCGCCGTGTTTGTTTCTCGGCGT
TTGAGAGGGTCCGACGGTCATGGGTGTCGAGAATGGTGTGTGTGCAGCAT
CTCACGCGCACCCTTGTGTAGGTATAGGCGAACAGAAGCGGTAAGTTTAC
GGTGCCACCCCCCCCCCCTCCGGTGCGATTGTTTGCGTTGCGCCATGAGG
CACATTGTGCTCGGCATGCGCACGTTTTTACTTGGTCTCTGTGAGGGCGC
TGGTACGGGGGTGTAGGTAGTAGTCGTGGGGGAAACGCTTGAAATTCGAA
ATGACGAAATGACTCATGTAGCTTAAGGTGCTTAAGGTCTTGCTTTTTGA
GCGATCTCGCACCCGTAGCACATGCTCCCTGCATACGGTACGCACACAGA
GTGCGCGTTCTGCCAGTAGCTCAGCGGAGCGCCTGCGGAAGGAAACCGAG
CTGACAGGCCTCGCGTAGCCGAAACCCAGGGTCGTGTCTGGCCGCTGCAG
CGTCCATCTATCTCCCCCCCCCCCTGCCCTCTGTCAATGCTCTAATTTAA
GCGTGATCATCCTCGCAGCACATCTTCTCTGGTGCCTCTTATGAGCAAAA
TATGATGTCAATTTTCTCAGCATCTGCAAGTGTTTTTTTAGTTCTTATTT
CGATCTTGTCCTACACAAGAGTACATATCTACATGGCACTTCTATATACG
AGCACATTGTTCTGACGGGCGTGTATTTAAAATGTACGTACGTCATTTGC
CCTCTCTGCCCGTCGTTGTATGTACATACATATGCATTGTATGGGGTCAC
ATCGGCTTTGAACGACGCAAACGACTCCCCCGCTTGACTGGAAGGTGCGG
TTCCGGATGCTGGTGTTCCGCCCCTTCGTGGGGGAGATCCTAGCCGGGAA
GGTCTCCGCTTGCAGCAAGCAGGGCATCAAGGTGTGGGCCGTACGCGTGC
GCGTGTACCCGAGACGAGACGGCAGGACTCCTTGTTCATAGCAGTATATA
GCTGGTGTGTTGTGCCGTGCACCTACCTGCTCATGGGTGTGCGCGGAAAA
ATGCTGGCGCAAGAGTGTCGGTAGGGACTGTGCGGGGCCTGTGTCTTTTG
TTGACCTGTCTGCAATTCTACCGCGGGCACGTGTTTTATTTAGCATGTGT
ACGTGTGTACCATGCAGTCGTTCGCATGCTTCTTGTCTCGGTACCGCATC
TCGTTGAATAATTTTGTAACTGTCAAATCCAGGAAATGGTGTGAGTTTCT
TGGAGCTCGGGTAGCGCGGCCCATCCTGGGGAGACGCGCTGTTCAGTTTG
CACGGCGGCGTCGGCTGCCCCCCCCCCCCCCCCCCCCTTCTCCTTGCGGT
GGGCGTGTGTTATTTATCTTGCCGCGGCCGTGATAGCCAAACCTAGCTGG
GGCCCCGCAGCAATGTGGTAATCGAAAGCTAGAAAGCTTCGGCTAGTTTT
GTTCCAAAAGTCACCACCCAGCAGCAGCCTTGATCCCAACTGGCATCTTT
GTCAGCTCTAACCCCCCGACGTTTTCCCTTTGGCTGACTGTAGGGATGAC
CTTGTACACACAGAGAGAGAGTTCGTCGCAGCCGTCGATTGAGGGGACCC
GCCCCCTGCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCGGCCNNNNNNT
GCCTGTGGGGGGGGCCTTTTAAACACAGGGAGAGGTTCCGCCGCCGCCGC
CCATTGGGGGGCCCCCCCCCCCGCACCCCCCCCCCCCCCCCCCCCCCCTC
TCTCTCGCTGCCGCCGCCGCTGCATGCATGCATGCATGCGTTCCCAGGTG
TCCTTAGATTTCTTCGAGAAGGCGTCCATACCAAAGGACCTCCTCCAGTC
GCCGTCCGTCTTGTGAGTGCTTGCCGGCATCATCCTATCCCGGCTCTGCC
GCGTGAGAGGCACGGGCCCCCCGTCGCTCGGTGTACCTCTCTATGGTCCG
GCGGTGTACCTTTCTATGGTTCATTGTCCGACGCGGACAGTGAAAAGCAG
ATGTTCTCGTATTCGTCGGCATTCAGGCGTAAAACCTGGCAAAGTGGGGG
TACATGTATGTATGTATGTACGTGCAGGGCGTGCCTGTTCGCGCGCTGAG
TGCTATATACCTCTGTAGATATATATCGTAAGAAAAGGCTGGTTTCACGG
GCGCGTGCGACAAAAATCTTACGCAAGCACCGCAGAAGGGGGTAGTGGGA
GCCTTGGGGAAAAGGAACCCTTTCGTGCGACCACGGTTCAGTACTCTGGC
AAGATGTCCTCTTGACAAGGAGCCAGCCCATCAAGCACTGGAAATAAACG
TGAAGAACAAAAACAAGCAAAAAAATGCTTATTTGTGGGGCTCGTCCTTT
TTTCGGTCACAGCTGGGACAACCTGCTTGTCCGCACGTATGTATGTATGC
ATGTATGTTATGTACCAAGCATTTTGTTCCAAAAGAAATCGCCGTAACCG
GTGCTGCTTCGCCCCTCCCTCCCCTCCTGCCTTTCCTACATACACACGTC
CCTCTGCCCCCCCGGTATCTCGCGCTCCTTCGCCTGTCTTCATCGTGAAT
ACGCACGTACTTACCACGTACATATGCATTTATGCGCTTTTGTCTTATTT
AGCACTCGAGGGGAGTGGGTGTGGTCTTACCCCGACCCGGACTACTTACC
ACATATGTATTTATGCGCTTTTGTCTTATTTAGCACTCGAGGGGAGTGGC
TGTGGTCTTGCCCCGACCCGGACTACGTGCCACTTATGTATTTATGCGCC
CTTGTCTTATTTAGCACTCGAGGGGAGTGGCTGTGGTCTTACCCCGACCC
GGACGCGGAAGAAGGCGAGGAGGGCGAGGGGAAGGGGGGTGCCGGCGGCG
AGAACGGGGGCGGGGCGGAGGGGGGGGAGGAGGCTTTTTCGCTGGCTCTG
CACGACGAAGTACGGTTTAGAGTCCGGACGCTGGAGTTCACGCAGGTGGG
GTGGCAATGAGGGAACGACCTGAGATCAAGCTCGCTCACATTAACACTCA
ACATTATTTCTGGCCGACTTGGATGCATAATAAAATATTAAAAAACGAGG
ATGTATGTATGTAGGTCACACGCAGTTCGGTGTGTTGCTTCTTCTTCTAA
GCGCCGCCGTCTGTCGCGTGAGTTGGTTCATTTGGCGCATGACGGCCGGA
CTCTTCTGTTGTCTTTCCAGCGCATTTTTGGATTTTTTTTTTTTATGTCG
AGCTTTTTTGTTGCCGCATATTTTGTCGGTGGCACAACTGACTACGTTGG
CAGAGTTGCGGGGAATGTACCTATGTAGCCTCGCACAGGACCGCCACCAC
CGTTTTTGTCTACGGTATCTGCATACTTGGTGCATACGAGCGAGGGTCAC
ACACACGCAACGGCAAACCAATCGCCGTCCTGCGTGAAAGGCCGACGCGT
CCTTTTTTTGTGTTTATTTTATCTCTCAAACATTGCCACTAATTTCATGT
TACCTAGGTATATACATATAAACGACTTTGCATCTCTCTCGTGCCCAGCG
CACACCCACGTCATGCGTCGGCTCTTCCGTTTGCGCCTCGGCGCCTGGGG
CGGCGACGAAACACATTCCGAACGAATCGCGCGATTTAAGAGCTGACCAC
CATCCAGTCCTCGGCCCCAGGGGCACCGATCGCCATCTGAGCACTTCGAG
CGTGTGCTCTCCATTGTGATGTCTCTGGGCGTGCTGGTTTTATTGGGCAT
GGGCGTTACGTGTGGCGAGAGCTTTGTAGCGGTGTGGAATCCGATCGAGC
TTTTGGGCCGGGCAACCGAGTCGATTTGTTTTTTTAAAATCCTACCGCAT
CGTCAGCCCTTTTTGCAATATTTGTTTTTCTAAAAGTGTCGTAAACAAGT
ATTTCCGGGGGGGGGGGGGCTATCGTAGACACGTGGAACCCCCCTCACCC
GTCCCAGACTAATTGTAGGCAGAAATCTCGCAATCTGTGGAAATAGCTCG
CTGGCAAAGATAAGTTATTTCAGAGGGTCAGATGTAGACGCACTTATTTT
AGTTGATGTATACAAATGTCAGCAGTCTACGTCCAGTCTATAAGAAAGTC
GTTCCAGAGGGACTGCTTATTTTATGATGTTGTTGTTGTTGTTGTTGTTG
CTGTTGCTGGCTGGCGGCCGGGCGCAGGTTACGTCGACGGCCGCGGGTAG
GCTGCAGGCCACGACCGTGTCCACAGCTAGAGGGGGCGGAGGCGCGGCCG
GAGGGGCTACGGGCGGAGGGGTTGGGGGCAGGGGGAGAGAGGGGGGAGGC
GCCGCGGGGAGCGGCGCGGAGCCACCGATAATGCGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig818:2119..7007-

>mRNA_L-elsbetiae_contig818.17175.1 ID=mRNA_L-elsbetiae_contig818.17175.1|Name=mRNA_L-elsbetiae_contig818.17175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1338bp|location=Sequence derived from alignment at L-elsbetiae_contig818:2119..7007- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGCCCCAAGCAAGTTTAGCGGCGATGCTCTGGACGTGCTAACGGC
GCAGATAGAGGCCAAGTTCGCCGACAGGGTGATCGCCAACGTCGGCCTCT
GCGTGTGCCTGCACAGCTACGAGAGCATAGGGGACCCTTACGTCTACCCC
TCTGATGGCGCAGCGCACTACAAGCAGGTGGCCCCAAGCAAGTTTAGCGG
CGATGCTCTGGACGTGCTAACGGCGCAGATAGAGGCCAAGTTCGCCGACA
GGGTGATCGCCAACGTCGGCCTCTGCGTGTGCCTGCACAGCTACGAGAGC
ATAGGGGACCCTTACGTCTACCCCTCTGATGGCGCAGCGCACTACAAGGT
GCGGTTCCGGATGCTGGTGTTCCGCCCCTTCGTGGGGGAGATCCTAGCCG
GGAAGGTCTCCGCTTGCAGCAAGCAGGGCATCAAGGTGCGGTTCCGGATG
CTGGTGTTCCGCCCCTTCGTGGGGGAGATCCTAGCCGGGAAGGTCTCCGC
TTGCAGCAAGCAGGGCATCAAGGTGTCCTTAGATTTCTTCGAGAAGGCGT
CCATACCAAAGGACCTCCTCCAGTCGCCGTCCGTCTTGTGTCCTTAGATT
TCTTCGAGAAGGCGTCCATACCAAAGGACCTCCTCCAGTCGCCGTCCGTC
TTCACTCGAGGGGAGTGGCTGTGGTCTTACCCCGACCCGGACGCGGAAGA
AGGCGAGGAGGGCGAGGGGAAGGGGGGTGCCGGCGGCGAGAACGGGGGCG
GGGCGGAGGGGGGGGAGGAGGCTTTTTCGCTGGCTCTGCACGACGAAGTA
CGGTTTAGAGTCCGGACGCTGGAGTTCACGCAGCACTCGAGGGGAGTGGC
TGTGGTCTTACCCCGACCCGGACGCGGAAGAAGGCGAGGAGGGCGAGGGG
AAGGGGGGTGCCGGCGGCGAGAACGGGGGCGGGGCGGAGGGGGGGGAGGA
GGCTTTTTCGCTGGCTCTGCACGACGAAGTACGGTTTAGAGTCCGGACGC
TGGAGTTCACGCAGGTTACGTCGACGGCCGCGGGTAGGCTGCAGGCCACG
ACCGTGTCCACAGCTAGAGGGGGCGGAGGCGCGGCCGGAGGGGCTACGGG
CGGAGGGGTTGGGGGCAGGGGGAGAGAGGGGGGAGGCGCCGCGGGGAGCG
GCGCGGAGCCACCGATAATGCGGTAAGTTACGTCGACGGCCGCGGGTAGG
CTGCAGGCCACGACCGTGTCCACAGCTAGAGGGGGCGGAGGCGCGGCCGG
AGGGGCTACGGGCGGAGGGGTTGGGGGCAGGGGGAGAGAGGGGGGAGGCG
CCGCGGGGAGCGGCGCGGAGCCACCGATAATGCGGTAA
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