mRNA_L-elsbetiae_contig8171.17167.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8171.17167.1
Unique NamemRNA_L-elsbetiae_contig8171.17167.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8171.17167.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.170e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 LESESDLDVTEAGGPGHATLPAYKKAPAVPGTGTQGDEGSTPPSLSPGGGD 153
            L SESDLD+TE  GPG ATLPA + APAVPG G QGDEGS PPS   GGGD
Sbjct:  473 LASESDLDMTEIRGPGRATLPARENAPAVPGNGIQGDEGSAPPSPHLGGGD 523
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BLAST of mRNA_L-elsbetiae_contig8171.17167.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.190e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 LESESDLDVTEAGGPGHATLPAYKKAPAVPGTGTQGDEGSTPPSLSPGGGD 153
            L SESDLD+TE  GPG ATLPA + APAVPG G QGDEGS PPS   GGGD
Sbjct: 1029 LASESDLDMTEIRGPGRATLPARENAPAVPGNGIQGDEGSAPPSPHLGGGD 1079
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BLAST of mRNA_L-elsbetiae_contig8171.17167.1 vs. uniprot
Match: A0A6H5JF14_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF14_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.350e-8
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  276 YDPADSRYPSGREGQRLAWTASSGGPRRHGLQLGRTRGQT 395
            YDPADSRYP GREG+RL W AS  GP RHGL+ GRTR +T
Sbjct:  190 YDPADSRYPPGREGRRLLWGASKEGPLRHGLERGRTRRET 229
[Close]
BLAST of mRNA_L-elsbetiae_contig8171.17167.1 vs. uniprot
Match: A0A6H5KU45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU45_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.650e-8
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  276 YDPADSRYPSGREGQRLAWTASSGGPRRHGLQLGRTRGQT 395
            YDPADSRYPSGREG++L W ASS    RH LQLGRTR QT
Sbjct: 1651 YDPADSRYPSGREGKKLLWEASSADQLRHVLQLGRTRKQT 1690
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BLAST of mRNA_L-elsbetiae_contig8171.17167.1 vs. uniprot
Match: A0A6H5JKW3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.110e-8
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  276 YDPADSRYPSGREGQRLAWTASSGGPRRHGLQLGRTRGQT 395
            +DPADSRYP GREG+RL W AS  GP RHGL+ GRTR +T
Sbjct:   60 FDPADSRYPPGREGRRLLWGASKEGPLRHGLERGRTRRET 99
[Close]
BLAST of mRNA_L-elsbetiae_contig8171.17167.1 vs. uniprot
Match: A0A6H5KFR2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.120e-8
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  276 YDPADSRYPSGREGQRLAWTASSGGPRRHGLQLGRTRGQT 395
            +DPADSRYP GREG+RL W AS  GP RHGL+ GRTR +T
Sbjct:  136 FDPADSRYPPGREGRRLLWGASKEGPLRHGLERGRTRRET 175
[Close]
BLAST of mRNA_L-elsbetiae_contig8171.17167.1 vs. uniprot
Match: A0A6H5JR97_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR97_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.350e-8
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  276 YDPADSRYPSGREGQRLAWTASSGGPRRHGLQLGRTRGQT 395
            +DPADSRYP GREG+RL W AS  GP RHGL+ GRTR +T
Sbjct:   85 FDPADSRYPPGREGRRLLWGASKEGPLRHGLERGRTRRET 124
[Close]
BLAST of mRNA_L-elsbetiae_contig8171.17167.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.700e-8
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  276 YDPADSRYPSGREGQRLAWTASSGGPRRHGLQLGRTRGQT 395
            +DPADSRYP GREG+RL W AS  GP RHGL+ GRTR +T
Sbjct:  156 FDPADSRYPPGREGRRLLWGASKEGPLRHGLERGRTRRET 195
[Close]
BLAST of mRNA_L-elsbetiae_contig8171.17167.1 vs. uniprot
Match: A0A6H5J9M2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9M2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.790e-8
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  276 YDPADSRYPSGREGQRLAWTASSGGPRRHGLQLGRTRGQT 395
            +DPADSRYP GREG+RL W AS  GP RHGL+ GRTR +T
Sbjct:  722 FDPADSRYPPGREGRRLLWGASKEGPLRHGLERGRTRRET 761
[Close]
BLAST of mRNA_L-elsbetiae_contig8171.17167.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.810e-8
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  276 YDPADSRYPSGREGQRLAWTASSGGPRRHGLQLGRTRGQT 395
            +DPADSRYP GREG+RL W AS  GP RHGL+ GRTR +T
Sbjct:  409 FDPADSRYPPGREGRRLLWGASKEGPLRHGLERGRTRRET 448
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8171.17167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE1.170e-1172.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE1.190e-1172.55Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF14_9PHAE1.350e-872.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KU45_9PHAE3.650e-875.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKW3_9PHAE4.110e-870.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFR2_9PHAE4.120e-870.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JR97_9PHAE4.350e-870.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D6_9PHAE4.700e-870.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J9M2_9PHAE4.790e-870.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K9E2_9PHAE4.810e-870.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8171contigL-elsbetiae_contig8171:8542..8993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size399
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816901.197154-CDS-L-elsbetiae_contig8171:8541..87251622816901.197154-CDS-L-elsbetiae_contig8171:8541..8725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8171 8542..8725 +
1691683898.5533576-CDS-L-elsbetiae_contig8171:8541..87251691683898.5533576-CDS-L-elsbetiae_contig8171:8541..8725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8171 8542..8725 +
1622816901.2112129-CDS-L-elsbetiae_contig8171:8780..89921622816901.2112129-CDS-L-elsbetiae_contig8171:8780..8992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8171 8781..8992 +
1691683898.5703344-CDS-L-elsbetiae_contig8171:8780..89921691683898.5703344-CDS-L-elsbetiae_contig8171:8780..8992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8171 8781..8992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8171.17167.1prot_L-elsbetiae_contig8171.17167.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8171 8542..8992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8171.17167.1

>prot_L-elsbetiae_contig8171.17167.1 ID=prot_L-elsbetiae_contig8171.17167.1|Name=mRNA_L-elsbetiae_contig8171.17167.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
LESESDLDVTEAGGPGHATLPAYKKAPAVPGTGTQGDEGSTPPSLSPGGG
DVGGGDFSSHAAAAAATSAATAVAPPTTAAAAATAAVAVTTIMTPPTAAT
LQGERDNGSPGPPRREGRDAMACSSVARGGRP
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mRNA from alignment at L-elsbetiae_contig8171:8542..8993+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8171.17167.1 ID=mRNA_L-elsbetiae_contig8171.17167.1|Name=mRNA_L-elsbetiae_contig8171.17167.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=452bp|location=Sequence derived from alignment at L-elsbetiae_contig8171:8542..8993+ (Laminarionema elsbetiae ELsaHSoW15)
TTGGAAAGCGAGTCCGACCTCGACGTGACGGAGGCTGGTGGGCCAGGCCA
TGCGACACTGCCGGCGTACAAGAAGGCGCCGGCAGTACCCGGCACCGGGA
CCCAGGGGGACGAAGGAAGCACCCCCCCGTCGCTCTCTCCGGGAGGGGGC
GACGTCGGTGGTGGCGATTTTAGCAGCCACGCCGGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAACATCAGCAGCAGCAGCAGCAGCA
GCGACCTCAGCGGCAACGGCAGTGGCGCCGCCGACGACGGCGGCGGCAGC
AGCGACGGCGGCGGTGGCGGTGACGACGATTATGACCCCGCCGACAGCCG
CTACCCTTCAGGGCGAGAGGGACAACGGCTCGCCTGGACCGCCTCGTCGG
GAGGGCCGCGACGCCATGGCCTGCAGCTCGGTCGCACGCGGGGGCAGACC
CG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8171:8542..8993+

>mRNA_L-elsbetiae_contig8171.17167.1 ID=mRNA_L-elsbetiae_contig8171.17167.1|Name=mRNA_L-elsbetiae_contig8171.17167.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig8171:8542..8993+ (Laminarionema elsbetiae ELsaHSoW15)
TTGGAAAGCGAGTCCGACCTCGACGTGACGGAGGCTGGTGGGCCAGGCCA
TGCGACACTGCCGGCGTACAAGAAGGCGCCGGCAGTACCCGGCACCGGGA
CCCAGGGGGACGAAGGAAGCACCCCCCCGTCGCTCTCTCCGGGAGGGGGC
GACGTCGGTGGTGGCGATTTTAGCAGCCACGCCGTTGGAAAGCGAGTCCG
ACCTCGACGTGACGGAGGCTGGTGGGCCAGGCCATGCGACACTGCCGGCG
TACAAGAAGGCGCCGGCAGTACCCGGCACCGGGACCCAGGGGGACGAAGG
AAGCACCCCCCCGTCGCTCTCTCCGGGAGGGGGCGACGTCGGTGGTGGCG
ATTTTAGCAGCCACGCCGCAGCAGCAGCAGCGACCTCAGCGGCAACGGCA
GTGGCGCCGCCGACGACGGCGGCGGCAGCAGCGACGGCGGCGGTGGCGGT
GACGACGATTATGACCCCGCCGACAGCCGCTACCCTTCAGGGCGAGAGGG
ACAACGGCTCGCCTGGACCGCCTCGTCGGGAGGGCCGCGACGCCATGGCC
TGCAGCTCGGTCGCACGCGGGGGCAGACCCCAGCAGCAGCAGCGACCTCA
GCGGCAACGGCAGTGGCGCCGCCGACGACGGCGGCGGCAGCAGCGACGGC
GGCGGTGGCGGTGACGACGATTATGACCCCGCCGACAGCCGCTACCCTTC
AGGGCGAGAGGGACAACGGCTCGCCTGGACCGCCTCGTCGGGAGGGCCGC
GACGCCATGGCCTGCAGCTCGGTCGCACGCGGGGGCAGACCC
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