mRNA_L-elsbetiae_contig817.17165.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig817.17165.1
Unique NamemRNA_L-elsbetiae_contig817.17165.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig817.17165.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.550e-13
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:   10 YRNRFKSWSYKFLNRHRFSIHRRTSVGQKKPYGWESKAWAFIMKLRPLLLRHAKEAILVEKAAAAAKGGGTVEIDVEGTPATAEELFAIQGKIFEMLYNMDQTP 321
            ++++FKSW  +F  R++FSI RRTSVGQK P G E  AWA +MKLR  LL  A E  +  +    A G    E  + G   ++ +L  +  ++FE L NMDQTP
Sbjct:  176 FKSKFKSWYQRFRKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGE--IYAQRYPPAPG----ESPIRGEDLSSSQLELVTDELFEELGNMDQTP 273
[Close]
BLAST of mRNA_L-elsbetiae_contig817.17165.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.330e-13
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:   16 NRFKSWSYKFLNRHRFSIHRRTSVGQKKPYGWESKAWAFIMKLRPLLLRHAKEAILVEKAAAAAKGGGTVEIDVEGTPATAEELFAIQGKIFEMLYNMDQTP 321
            ++FKSW  +F  R++FSI RRTSVGQK P G E  AWA +MKLR  LL  A E  +  +    A G    E  + G   ++ +L  +  ++FE L NMDQTP
Sbjct:  183 SKFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGE--IYAQRYPPAPG----ESPIRGEDLSSSQLELVTDELFEELGNMDQTP 278
[Close]
BLAST of mRNA_L-elsbetiae_contig817.17165.1 vs. uniprot
Match: A0A6H5K4S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.030e-13
Identity = 47/123 (38.21%), Postives = 64/123 (52.03%), Query Frame = 1 
Query:   10 YRNRFKSWSYKFLNRHRFSIHRRTSVGQKKPYGWESKAWAFIMKLRPLLLRHAKEAI--------LVEKAA-----------AAAKGGGTVEIDVEGTPATAEELFAIQGKIFEMLYNMDQTP 321
            ++++FKSW  +F  R++FSI RRTSVGQK P G ES AWA +MKLR  LLR   E I        +V +             A     G     + G   ++ +L  +  ++FE L NMDQTP
Sbjct:  169 FKSKFKSWYQRFRKRNKFSIRRRTSVGQKLPKGHESMAWATLMKLRKALLRGGPEFISPGVGDRRIVRRTGQHGPDASPARDAGGDDSGKDRXPIRGEDLSSSQLELVTDELFEELGNMDQTP 291
[Close]
BLAST of mRNA_L-elsbetiae_contig817.17165.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.190e-12
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 2 
Query:  323 IQAEMPQETILQHTGSKDARITTAGEEKLRYTVVLTVRADGAKVKPRIIYKGSP 484
            +Q EMP ET L+ TG+KDARI+T GEEK R+T+VL V ADG KV PRII+KG+P
Sbjct:  307 VQHEMPVETTLEKTGAKDARISTGGEEKERFTLVLAVMADGKKVSPRIIFKGTP 360
[Close]
BLAST of mRNA_L-elsbetiae_contig817.17165.1 vs. uniprot
Match: A0A6H5JFD9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD9_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 9.960e-12
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 2 
Query:  323 IQAEMPQETILQHTGSKDARITTAGEEKLRYTVVLTVRADGAKVKPRIIYKGSP 484
            +Q EMP ET L+ TG+KDARI+T G+EK R+T+VL V ADG KV PRII+KG+P
Sbjct:  292 VQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTP 345
[Close]
BLAST of mRNA_L-elsbetiae_contig817.17165.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.180e-11
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 2 
Query:  323 IQAEMPQETILQHTGSKDARITTAGEEKLRYTVVLTVRADGAKVKPRIIYKGSP 484
            +Q EMP ET L+ TG+KDARI+T G+EK R+T+VL V ADG KV PRII+KG+P
Sbjct:  125 VQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTP 178
[Close]
BLAST of mRNA_L-elsbetiae_contig817.17165.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.340e-11
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 2 
Query:  323 IQAEMPQETILQHTGSKDARITTAGEEKLRYTVVLTVRADGAKVKPRIIYKGSP 484
            +Q E+P ET L+ TG+KDARI+T G+EK R+T+VL V ADG KV PRII+KG+P
Sbjct:  125 VQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTP 178
[Close]
BLAST of mRNA_L-elsbetiae_contig817.17165.1 vs. uniprot
Match: A0A6H5K417_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K417_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.750e-10
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 2 
Query:  323 IQAEMPQETILQHTGSKDARITTAGEEKLRYTVVLTVRADGAKVKPRIIYKGSP 484
            +Q EMP ET L+ TG+KDARI+T G+E  R+T+V  V ADG KV PRII+KG+P
Sbjct:  386 VQQEMPVETTLEKTGAKDARISTGGKENERFTLVPAVMADGKKVSPRIIFKGTP 439
[Close]
BLAST of mRNA_L-elsbetiae_contig817.17165.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 6.570e-10
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 2 
Query:  323 IQAEMPQETILQHTGSKDARITTAGEEKLRYTVVLTVRADGAKVKPRIIYKGSP 484
            +Q EMP ET L+ TG+KDAR++T GEEK R+T+VL V ADG KV  RII+ G+P
Sbjct:   59 VQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTP 112
[Close]
BLAST of mRNA_L-elsbetiae_contig817.17165.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.360e-9
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 2 
Query:  323 IQAEMPQETILQHTGSKDARITTAGEEKLRYTVVLTVRADGAKVKPRIIYKGSP 484
            +Q EMP ET L+ TG KDARI+T G+EK R+T+VL V ADG  V P II+KG+P
Sbjct:  279 VQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTP 332
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig817.17165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5KYG9_9PHAE3.550e-1343.27DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE7.330e-1344.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4S0_9PHAE9.030e-1338.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRZ8_9PHAE4.190e-1266.67DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JFD9_9PHAE9.960e-1264.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK2_9PHAE1.180e-1164.81DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE4.340e-1162.96DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K417_9PHAE3.750e-1061.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KII4_9PHAE6.570e-1061.11DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTG5_9PHAE1.360e-961.11DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig817contigL-elsbetiae_contig817:5878..7099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size582
Cds size333
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig817.17165.1prot_L-elsbetiae_contig817.17165.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig817 6767..7099 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816901.076091-UTR-L-elsbetiae_contig817:5877..60631622816901.076091-UTR-L-elsbetiae_contig817:5877..6063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig817 5878..6063 -
1691683898.4613028-UTR-L-elsbetiae_contig817:5877..60631691683898.4613028-UTR-L-elsbetiae_contig817:5877..6063Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig817 5878..6063 -
1622816901.088087-UTR-L-elsbetiae_contig817:6704..67661622816901.088087-UTR-L-elsbetiae_contig817:6704..6766Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig817 6705..6766 -
1691683898.4719777-UTR-L-elsbetiae_contig817:6704..67661691683898.4719777-UTR-L-elsbetiae_contig817:6704..6766Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig817 6705..6766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816901.098246-CDS-L-elsbetiae_contig817:6766..70991622816901.098246-CDS-L-elsbetiae_contig817:6766..7099Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig817 6767..7099 -
1691683898.4827905-CDS-L-elsbetiae_contig817:6766..70991691683898.4827905-CDS-L-elsbetiae_contig817:6766..7099Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig817 6767..7099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig817.17165.1

>prot_L-elsbetiae_contig817.17165.1 ID=prot_L-elsbetiae_contig817.17165.1|Name=mRNA_L-elsbetiae_contig817.17165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
VDKYRNRFKSWSYKFLNRHRFSIHRRTSVGQKKPYGWESKAWAFIMKLRP
LLLRHAKEAILVEKAAAAAKGGGTVEIDVEGTPATAEELFAIQGKIFEML
YNMDQTPNPG*
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mRNA from alignment at L-elsbetiae_contig817:5878..7099-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig817.17165.1 ID=mRNA_L-elsbetiae_contig817.17165.1|Name=mRNA_L-elsbetiae_contig817.17165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1222bp|location=Sequence derived from alignment at L-elsbetiae_contig817:5878..7099- (Laminarionema elsbetiae ELsaHSoW15)
GTTGACAAGTATCGGAACAGATTCAAGAGCTGGTCCTACAAGTTTCTCAA
CAGGCACAGGTTCTCGATCCACCGCAGAACAAGTGTGGGGCAGAAGAAGC
CGTACGGGTGGGAAAGCAAGGCGTGGGCGTTCATCATGAAGCTTCGCCCG
CTTCTGCTTCGACACGCAAAGGAGGCCATTCTCGTGGAGAAGGCAGCAGC
GGCAGCGAAGGGCGGAGGAACAGTGGAGATCGACGTCGAAGGGACCCCGG
CGACTGCGGAGGAACTTTTCGCTATTCAAGGCAAGATCTTCGAGATGCTC
TACAACATGGACCAGACCCCTAATCCAGGCTGAGATGCCGCAGGAGACTA
TCCTGCAGCACACTGGGTCCAAGGATGCTCGCATCACGACAGCAGGTAAG
ACGGTCTCCCGGTGCTTTCTTTTGGTTGATCCAAAAACTTTTCGAATGCA
GCAAATTACGGTGGTTGGCAAAATACAAATGCCGACAGCGGCAAAGTACG
AAAGAGCCAACGGTTGTTTTTTTGAATTTGTGAATTTGCACTGCCGTTCA
GTTCTTTTTTTGCTGAAAGGGAATGTTTTGTACCACATCTACTGTCTTCC
CACAAATAATAACGCATCGGACGTGGCCACAATGAAATGCTCATTTGTAT
GTATTTCACGGAGCGGTTGTTTTGCAATTTTATTAATTTTATTATATACC
GGTAGGTAGTAATATTGTTGATTCTTTGCATGCTCATTTGTTTATATTTC
ACGGAGTATTTACCCGGGTATTTACCCATGTATAGATTGGAGGTTCATTA
CGGAGGATACGATTGATTTTTTTATTTATGTCTGGATCTACCTGCAATTG
TCGGAGGGCAAACGAAATATTAATATATTTTCTTCATGTAATAATTGTTG
CATTTTTGCAACACAAAAATGTTTTTAAAAGTATTCAATACGGTACTACT
GTAGTACCGTATTTTCCCACGTACCATTGTCTGACCTGTTTGTATCCTAC
CCTGTCCAAAATTTCGCTTGTTCCTTCCGTACTCAGGTGAAGAGAAGCTG
AGATACACGGTGGTGCTAACGGTGCGGGCCGACGGGGCGAAGGTCAAGCC
GCGCATCATCTACAAGGGCAGCCCCCTTCGTAGGGGGAACCAAAAAGTCC
GGCTCGGCAAAAAAGCCCGGAAAGAACAGCCTGTCCTACGAGCACCTTCC
GGCCAAGCGGACATCTTTCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig817:5878..7099-

>mRNA_L-elsbetiae_contig817.17165.1 ID=mRNA_L-elsbetiae_contig817.17165.1|Name=mRNA_L-elsbetiae_contig817.17165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig817:5878..7099- (Laminarionema elsbetiae ELsaHSoW15)
GTTGACAAGTATCGGAACAGATTCAAGAGCTGGTCCTACAAGTTTCTCAA
CAGGCACAGGTTCTCGATCCACCGCAGAACAAGTGTGGGGCAGAAGAAGC
CGTACGGGTGGGAAAGCAAGGCGTGGGCGTTCATCATGAAGCTTCGCCCG
CTTCTGCTTCGACACGCAAAGGAGGCCATTCTCGTGGAGAAGGCAGCAGC
GGCAGCGAAGGGCGGAGGAACAGTGGAGATCGACGTCGAAGGGACCCCGG
CGACTGCGGAGGAACTTTTCGCTATTCAAGGCAAGATCTTCGAGATGCTC
TACAACATGGACCAGACCCCTAATCCAGGCTGAGTTGACAAGTATCGGAA
CAGATTCAAGAGCTGGTCCTACAAGTTTCTCAACAGGCACAGGTTCTCGA
TCCACCGCAGAACAAGTGTGGGGCAGAAGAAGCCGTACGGGTGGGAAAGC
AAGGCGTGGGCGTTCATCATGAAGCTTCGCCCGCTTCTGCTTCGACACGC
AAAGGAGGCCATTCTCGTGGAGAAGGCAGCAGCGGCAGCGAAGGGCGGAG
GAACAGTGGAGATCGACGTCGAAGGGACCCCGGCGACTGCGGAGGAACTT
TTCGCTATTCAAGGCAAGATCTTCGAGATGCTCTACAACATGGACCAGAC
CCCTAATCCAGGCTGA
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