|
|
Homology
BLAST of mRNA_L-elsbetiae_contig8161.17159.1 vs. uniprot
Match: A0A836C9E1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9E1_9STRA) HSP 1 Score: 125 bits (313), Expect = 6.260e-31 Identity = 67/160 (41.88%), Postives = 90/160 (56.25%), Query Frame = 1
Query: 163 LRVALLLLLRSAPASAMVDLTLYGGVFDSSSIIAYAEVAQT-CFGGLEVGTCKPSSPNWLIDFLDQYNE-GVSGAYCAACCSNTDVSG----------DTWTFTCPLVSIAFAEFVNHFGWEFRFGRRETPDDKEVITCPIPRKECFYDEDGVLSAPCES 606
+RVA L R A ++A D+ +YGG FD+ ++Y +V+ CFGGL++GTCKP S WL D++ +YN +G YC +CCSN+ G DTW TC L S +FVN FG+EF F R D +++ C IPR C Y DG L C S
Sbjct: 6 IRVANFLAARIAESAAN-DVQIYGGYFDARFAVSYTDVSSKGCFGGLDLGTCKPPSDLWLQDWMAEYNSISAAGTYCLSCCSNSAPYGGTNANPEEEADTWDLTCQLASTTQKKFVNVFGYEFIFLRNSHNGDLDLVRCQIPRTACTYKSDGNLEGTCVS 164
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-05_006100.1 |
| Exons | 4 |
| Model size | 618 |
| Cds size | 618 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816900.6411996-CDS-L-elsbetiae_contig8161:4988..5110 | 1622816900.6411996-CDS-L-elsbetiae_contig8161:4988..5110 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8161 4989..5110 - |
| 1691683898.1483264-CDS-L-elsbetiae_contig8161:4988..5110 | 1691683898.1483264-CDS-L-elsbetiae_contig8161:4988..5110 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8161 4989..5110 - |
| 1622816900.6541357-CDS-L-elsbetiae_contig8161:5561..5703 | 1622816900.6541357-CDS-L-elsbetiae_contig8161:5561..5703 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8161 5562..5703 - |
| 1691683898.1605222-CDS-L-elsbetiae_contig8161:5561..5703 | 1691683898.1605222-CDS-L-elsbetiae_contig8161:5561..5703 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8161 5562..5703 - |
| 1622816900.6706736-CDS-L-elsbetiae_contig8161:6262..6343 | 1622816900.6706736-CDS-L-elsbetiae_contig8161:6262..6343 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8161 6263..6343 - |
| 1691683898.1748235-CDS-L-elsbetiae_contig8161:6262..6343 | 1691683898.1748235-CDS-L-elsbetiae_contig8161:6262..6343 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8161 6263..6343 - |
| 1622816900.6831331-CDS-L-elsbetiae_contig8161:6753..7026 | 1622816900.6831331-CDS-L-elsbetiae_contig8161:6753..7026 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8161 6754..7026 - |
| 1691683898.1842077-CDS-L-elsbetiae_contig8161:6753..7026 | 1691683898.1842077-CDS-L-elsbetiae_contig8161:6753..7026 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8161 6754..7026 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8161.17159.1 >prot_L-elsbetiae_contig8161.17159.1 ID=prot_L-elsbetiae_contig8161.17159.1|Name=mRNA_L-elsbetiae_contig8161.17159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
ALGVPRRCSPLRQNAGESRWALTCDESIRSRRHAPVTFGLQAAMRMIRPM
VAVWLRVALLLLLRSAPASAMVDLTLYGGVFDSSSIIAYAEVAQTCFGGL
EVGTCKPSSPNWLIDFLDQYNEGVSGAYCAACCSNTDVSGDTWTFTCPLV
SIAFAEFVNHFGWEFRFGRRETPDDKEVITCPIPRKECFYDEDGVLSAPC
ESGAR* back to topmRNA from alignment at L-elsbetiae_contig8161:4989..7026- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8161.17159.1 ID=mRNA_L-elsbetiae_contig8161.17159.1|Name=mRNA_L-elsbetiae_contig8161.17159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2038bp|location=Sequence derived from alignment at L-elsbetiae_contig8161:4989..7026- (Laminarionema elsbetiae ELsaHSoW15)
GCGCTAGGTGTTCCACGCCGCTGCTCTCCTTTGCGCCAAAACGCGGGGGA
GTCTCGATGGGCACTGACGTGTGACGAAAGCATACGAAGCCGGCGTCATG
CACCTGTAACGTTTGGTCTCCAAGCTGCAATGCGCATGATTCGGCCAATG
GTTGCCGTGTGGCTTCGAGTCGCACTGCTGCTTCTGCTGCGGTCAGCACC
TGCAAGTGCCATGGTTGACCTCACTTTATACGGCGGGGTTTTCGACTCGT
CTTCGATTATAGCCTACGCCGAGGTATGAGCACGTGTCGGGCACAGTAGG
TGCTAATTCCAAGAGAGGCAAACTACTATCTACATAACTATGTATTGTAG
ACTCTCTGTAAGAACACATCAACAGACAGTCTACATAGTCTAGAGTAACC
AGAGGTTTATCAGATTGTGCCATTTAAACATTTAATTTATATTCTAGAAA
CGTCCATCTCTGCAAATATAGAGCTTGGATAGGTACCTTGCTCTGCAGAC
AGCAGTGAAGGCGCTGATAGAAGTGTTACGCGGTGTATGGGAGGATGGGT
ACATCTACATGTGTAGACTATGTACTACATAGTCTAGCTTGCTGGCTACT
TTTTCGTCTTGCGAAGCCCATTTCGGCTACCATGTCCTGAGAGGTTTTGC
CGATAAAACCAATCCCGTTTACGCGTTTCTCAGGTGGCACAGACATGCTT
TGGCGGGCTTGAAGTTGGCACCTGTAAGCCTTCGTCCCCCAACTGGCTTA
TCGACTTTCTCGATGTGAGTCCCAAACGGGAGACGTGCGCCACGTAAACG
TATGCATCCGTAGTGATCCACACTATAGGCGGACACTTCCTTTCATCGCC
ACGCACAGGGCCCCACCCCGTGTTTCGACAAGCAGGGAACAGGGAGGCTA
AGATAAACAATCGACTAGTGGCGTACAGTCTACATACATGAGGGGTTATA
CATCACCAAGTTGGTTAGACCGAGGATTGCCACGCGAAAGCAAAACGAAT
AGCAAGCATAAATCTGGACTGGAACTTCGCACATGAAGCCTTTGAAGATA
TGTACATGTATCGCCCTTCAGCTTTTACGATGAGGGCTGCCCATCCACAA
ACATGCCTTGGTCCTGGTGACGTTGGCTTTCTCCGAGAGGTCGAGAAACC
CTTTTCGGCTCCTATGTAGGTTCGGGCAGAGCAAGTTTTAAAGTACAGCG
CGCGCGCTGGTTGATTTAGACAGCCTCGACACTGCTTACATACATACATG
CTCCTGCTCAATATCTGCCTTGCTTGCGAACAAAACGACGTCTGCTGGCT
TGGCGGTCGTTGGGACCCTGCAGCAATACAACGAGGGGGTGTCGGGGGCA
TACTGTGCCGCTTGCTGCTCCAACACGGACGTATCCGGCGACACTTGGAC
GTTCACCTGCCCGCTCGTCTCGATTGCGTTCGCCGAATTCGTCAACCACT
TTGGCTGGGAATTCCGTGAGTGTCTCCAATACTTTGTATGTAGTGCAGCC
TTGATGTTGAGCTTGGTGTGCCTCAAGCTTGTCGAAAGAGCTCGGAACGC
CCGTGGCGCATCGGCCTCCTTCGAGCCGATACTACCGCATCTGGCGTTGC
TGCTTTCGGCCGGTCCCTGGCACAAACGTTCAGTGCAAGTGTCGAGCATC
TTGTTTCCGTGTGTATACATAGTGAAGAGAGTGGCACGCCGATGAACTCG
ACGGTGGCAAGGAGGGGTTGGTAGTACGAGGCATGCCAGCATATCTGAGA
GGCTTTGCTGCGGCTGGAGCGGGATGCACCCGTCGACAACCATTTGCGGA
GGCCTCGGGCCTCAGAGGGAGAAACCTCCAAACGGCAAGCGCACACATCA
CTTTGGCCGTGCACACTCCTCTTTTGTTGACCTGCGACGACGATGTGCGA
ACGAAACTACGATCAGGATTTGGACGCCGGGAAACTCCTGACGACAAAGA
GGTCATCACGTGCCCTATCCCGAGGAAAGAGTGTTTCTACGATGAAGACG
GTGTTCTGTCGGCCCCGTGTGAGAGTGGCGCGAGGTAA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8161:4989..7026- >mRNA_L-elsbetiae_contig8161.17159.1 ID=mRNA_L-elsbetiae_contig8161.17159.1|Name=mRNA_L-elsbetiae_contig8161.17159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig8161:4989..7026- (Laminarionema elsbetiae ELsaHSoW15)
GCGCTAGGTGTTCCACGCCGCTGCTCTCCTTTGCGCCAAAACGCGGGGGA
GTCTCGATGGGCACTGACGTGTGACGAAAGCATACGAAGCCGGCGTCATG
CACCTGTAACGTTTGGTCTCCAAGCTGCAATGCGCATGATTCGGCCAATG
GTTGCCGTGTGGCTTCGAGTCGCACTGCTGCTTCTGCTGCGGTCAGCACC
TGCAAGTGCCATGGTTGACCTCACTTTATACGGCGGGGTTTTCGACTCGT
CTTCGATTATAGCCTACGCCGAGGCGCTAGGTGTTCCACGCCGCTGCTCT
CCTTTGCGCCAAAACGCGGGGGAGTCTCGATGGGCACTGACGTGTGACGA
AAGCATACGAAGCCGGCGTCATGCACCTGTAACGTTTGGTCTCCAAGCTG
CAATGCGCATGATTCGGCCAATGGTTGCCGTGTGGCTTCGAGTCGCACTG
CTGCTTCTGCTGCGGTCAGCACCTGCAAGTGCCATGGTTGACCTCACTTT
ATACGGCGGGGTTTTCGACTCGTCTTCGATTATAGCCTACGCCGAGGTGG
CACAGACATGCTTTGGCGGGCTTGAAGTTGGCACCTGTAAGCCTTCGTCC
CCCAACTGGCTTATCGACTTTCTCGATGTGGCACAGACATGCTTTGGCGG
GCTTGAAGTTGGCACCTGTAAGCCTTCGTCCCCCAACTGGCTTATCGACT
TTCTCGATCAATACAACGAGGGGGTGTCGGGGGCATACTGTGCCGCTTGC
TGCTCCAACACGGACGTATCCGGCGACACTTGGACGTTCACCTGCCCGCT
CGTCTCGATTGCGTTCGCCGAATTCGTCAACCACTTTGGCTGGGAATTCC
CAATACAACGAGGGGGTGTCGGGGGCATACTGTGCCGCTTGCTGCTCCAA
CACGGACGTATCCGGCGACACTTGGACGTTCACCTGCCCGCTCGTCTCGA
TTGCGTTCGCCGAATTCGTCAACCACTTTGGCTGGGAATTCCGATTTGGA
CGCCGGGAAACTCCTGACGACAAAGAGGTCATCACGTGCCCTATCCCGAG
GAAAGAGTGTTTCTACGATGAAGACGGTGTTCTGTCGGCCCCGTGTGAGA
GTGGCGCGAGGTAAGATTTGGACGCCGGGAAACTCCTGACGACAAAGAGG
TCATCACGTGCCCTATCCCGAGGAAAGAGTGTTTCTACGATGAAGACGGT
GTTCTGTCGGCCCCGTGTGAGAGTGGCGCGAGGTAA back to top
|