mRNA_L-elsbetiae_contig8148.17146.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8148.17146.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 144 bits (363), Expect = 9.780e-33 Identity = 77/153 (50.33%), Postives = 101/153 (66.01%), Query Frame = 1 Query: 1 DNYVHDMQDAGMAMMESFGADVRNNVFENCRFGIRFSVGCANNLIENNEFSSMSQYGIYTYQGSDLPAVNDSPDADGRPKNNVFNKNVISNV--TIGVHINEGDNNEFTENVFTAVQRFNVEDGVGNLFMNNTVFTACLEAGTGAALGNIPRC 453 DN V++MQDAGMAMMES+ A++ +N F NCR+GIR S+G N+I NN FS ++QYG+YTY GSD P V P+++GRP +NVF+ N I IGVHI EGD+N F +NVFT V + ED +++NT CL+ T A G I C Sbjct: 484 DNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDV---PNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDNTG-GGCLDGSTDFAEGGITEC 632
BLAST of mRNA_L-elsbetiae_contig8148.17146.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 130 bits (327), Expect = 7.690e-28 Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 1 Query: 37 AMMESFGADVRNNVFENCRFGIRFSVGCANNLIENNEFSSMSQYGIYTYQGSDLPAVNDSPDADGRPKNNVFNKNVISNVTIGVHINEGDNNEFTENVFTAVQRFNVEDGVGNLFMNNTVFTACLEAGTGAALGNIPRC 453 A+MESF A++ +N ENC++GIR S+G A+N I +N F S S YG+YTY+GSD P V+ + DGR K+N F+ N ISN + + I EGD+N FT NVF V+ F ED ++ NN + CL+ T A G+IP C Sbjct: 710 ALMESFRAEIYDNTIENCKYGIRLSLGSADNDIHDNTFDSSSTYGLYTYKGSDDPDVSGN---DGRVKDNSFDANTISNTDVAMKIKEGDDNSFTNNVFENVKTFEFEDSTDTVWTNNDIGGGCLDESTDFASGSIPSC 845
BLAST of mRNA_L-elsbetiae_contig8148.17146.1 vs. uniprot
Match: A0A6H5JTN9_9PHAE (MEP5b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN9_9PHAE) HSP 1 Score: 115 bits (287), Expect = 8.420e-26 Identity = 64/136 (47.06%), Postives = 83/136 (61.03%), Query Frame = 1 Query: 4 NYVHDMQDAGMAMMESFGADVRNNVFENCRFGIRFSVGCANNLIENNEFSSMSQYGIYTYQGSDLPAVNDSPDADGRPKNNVFNKNVISNVTIGVHINEGDNNEFTENVFTA------VQRFNVEDGVGNLFMNNT 393 NYVHD DAG+AM+ESF ADV +N FEN ++G+RFSVGCA+N+ N S+ S+Y Y+Y GSD P V S GR +NNVF++N + + I E D +F +NVF V RF +D GNL NT Sbjct: 34 NYVHDNGDAGLAMLESFNADVSDNTFENNKYGVRFSVGCADNVFSENTISNNSKYNAYSYLGSDEPDVVSS----GRSQNNVFSQNSFAGAAETIKIKEADGTQFLDNVFEVGDADGLVVRF--DDATGNLMKGNT 163
BLAST of mRNA_L-elsbetiae_contig8148.17146.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 121 bits (303), Expect = 2.090e-25 Identity = 65/132 (49.24%), Postives = 80/132 (60.61%), Query Frame = 1 Query: 1 DNYVHDMQDAGMAMMESFGADVRNNVFENCRFGIRFSVGCANNLIENNEFSSMSQYGIYTYQGSDLPAVNDSPDADGRPKNNVFNKNVISNVTIGVHINEGDNNEFTENVFTAVQRFNVEDGVGNLFMNNTV 396 DN VHDMQDAGMAM+ES AD+ NN F + +FGIR S+G + N + N F +S G+YTYQGSD P S DGRP +N+F N I NVT GV I EGD+ T+NVFT D + NT+ Sbjct: 361 DNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVS---DGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNTL 489
BLAST of mRNA_L-elsbetiae_contig8148.17146.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 122 bits (305), Expect = 4.250e-25 Identity = 59/138 (42.75%), Postives = 84/138 (60.87%), Query Frame = 1 Query: 1 DNYVHDMQDAGMAMMESFGADVRNNVFENCRFGIRFSVGCANNLIENNEFSSMSQYGIYTYQGSDLPAVNDSPDADGRPKNNVFNKNVISNVTIGVHINEGDNNEFTENVFTAVQRFNVEDGVGNLFMNNTVFTACLE 414 DN + +MQDAG+AM+ESF A + N+ ++GIR S+G NN + N F+ +SQYG+YTY+GSD P V +DGRP NV N++ + IGV I EGD+NEF +N F V F + ++ N + C+E Sbjct: 736 DNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDV-----SDGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGNDIGDGCIE 868
BLAST of mRNA_L-elsbetiae_contig8148.17146.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.500e-23 Identity = 61/146 (41.78%), Postives = 85/146 (58.22%), Query Frame = 1 Query: 1 DNYVHDMQDAGMAMMESFGADVRNNVFENCRFGIRFSVGCANNLIENNEFSSMSQYGIYTYQGSDLPAVNDSPDADGRPKNNVFNKNVISNVTIGVHINEGDNNEFTENVFTAVQRFNVEDGVGNLFMNNT-VFTACLEAGTGAAL 435 DNY D DAGMA+MESF ADV NN FE+ ++G+R SVGCA+N+ N S S+Y +YTY+GSD P V DS GR ++N+F+ N I+ + + D EF +N F + + ED + NT + +A L+ GA Sbjct: 172 DNYXXDNGDAGMALMESFNADVSNNKFEDNKYGVRMSVGCADNVFSKNVISDSSEYNVYTYEGSDDPWVVDS----GRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKSAKTVRFEDAQDTIMSGNTGLGSATLKVSKGACF 313
BLAST of mRNA_L-elsbetiae_contig8148.17146.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 114 bits (286), Expect = 2.690e-23 Identity = 73/166 (43.98%), Postives = 95/166 (57.23%), Query Frame = 1 Query: 4 NYVHDMQDAGMAMMESFGADVRNNVFENCRFGIRFSVGCANNLIENNEFSSMSQYGIYTYQGSDLPAVNDSPDADGRPKNNVFNKNVISNVTIGVHINEGDNNEFTENVFTA------VQRFNVEDGVGNLFMNNTVFTACLEAGTGAALGNIPRC-DGEADSGEE 480 NYVHD DAG+AM+ESF ADV N FEN ++G+RFSVGCA+N+ NN S+ ++Y Y+Y G+D P V S GR +NNVF++N S + I E D +F +NVF V RF ++ NL NT L+ G + C DGEADSG E Sbjct: 350 NYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSS----GRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRF--DNATENLMQGNTG----LDDGEFELKVDNDACFDGEADSGYE 505
BLAST of mRNA_L-elsbetiae_contig8148.17146.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 112 bits (279), Expect = 2.130e-22 Identity = 70/166 (42.17%), Postives = 92/166 (55.42%), Query Frame = 1 Query: 4 NYVHDMQDAGMAMMESFGADVRNNVFENCRFGIRFSVGCANNLIENNEFSSMSQYGIYTYQGSDLPAVNDSPDADGRPKNNVFNKNVISNVTIGVHINEGDNNEFTENVFTAVQRFNVEDGVGNLFMNNTVFTACLEAGTGAALGNIP------RC-DGEADSGEE 480 NYVHD DAG+AM+ESF ADV N FEN ++G+R SVGCA+N+ N S+ S+Y YTY GSD P V S GR +NNVF++N S + I E D +F +NVF V D G + + + ++ TG G+ C DGE+DSG E Sbjct: 354 NYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSS----GRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFE------VGDADGLVVRFDDAMNSVMQGNTGLDEGDFELKVTNDSCFDGESDSGYE 509
BLAST of mRNA_L-elsbetiae_contig8148.17146.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA) HSP 1 Score: 107 bits (266), Expect = 8.440e-21 Identity = 58/131 (44.27%), Postives = 76/131 (58.02%), Query Frame = 1 Query: 1 DNYVHDMQDAGMAMMESFGADVRNNVFENCRFGIRFSVGCANNLIENNEFSSMSQYGIYTYQGSDLPAVNDSPDADGRPKNNVFNKNVISNVTIGVHINEGDNNEFTENVFTAVQRFNVEDGVGNLFMNNT 393 DNYVHD DAGMA+ME+F ADV NN FE+ ++GIR SVGCA+N+ N+ + S+Y +YTYQGSD P V DS GR ++ S V + D EF +N F + + ED G L N+ Sbjct: 346 DNYVHDNGDAGMALMETFNADVSNNKFEDNKYGIRMSVGCADNVFSKNDITGSSKYNVYTYQGSDAPWVVDS----GRSQDXXXXXXXXSGGQETVKLTMADGTEFIDNTFKSAKTIRFEDCQGTLMSGNS 472
BLAST of mRNA_L-elsbetiae_contig8148.17146.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE) HSP 1 Score: 105 bits (262), Expect = 2.750e-20 Identity = 60/146 (41.10%), Postives = 82/146 (56.16%), Query Frame = 1 Query: 1 DNYVHDMQDAGMAMMESFGADVRNNVFENCRFGIRFSVGCANNLIENNEFSSMSQYGIYTYQGSDLPAVNDSPDADGRPKNNVFNKNVISNVTIGVHINEGDNNEFTENVFTAVQRFNVEDGVGNLFMNNT-VFTACLEAGTGAAL 435 DN DAGMA+MESF ADV NN FE+ ++G+R SVGCA+N+ N S S+Y +YTY+GSD P V DS GR ++N+F+ N I+ + + D EF +N F + ED L NT + +A L+ GA Sbjct: 349 DNXXXXNGDAGMALMESFNADVSNNKFEDNKYGVRLSVGCADNVFSKNVISDSSKYNVYTYEGSDDPWVVDS----GRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKRAKTARFEDAETTLMSGNTGLGSATLKVSKGACF 490 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8148.17146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8148.17146.1 >prot_L-elsbetiae_contig8148.17146.1 ID=prot_L-elsbetiae_contig8148.17146.1|Name=mRNA_L-elsbetiae_contig8148.17146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp MQDAGMAMMESFGADVRNNVFENCRFGIRFSVGCANNLIENNEFSSMSQYback to top mRNA from alignment at L-elsbetiae_contig8148:5690..8158+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8148.17146.1 ID=mRNA_L-elsbetiae_contig8148.17146.1|Name=mRNA_L-elsbetiae_contig8148.17146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2469bp|location=Sequence derived from alignment at L-elsbetiae_contig8148:5690..8158+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8148:5690..8158+ >mRNA_L-elsbetiae_contig8148.17146.1 ID=mRNA_L-elsbetiae_contig8148.17146.1|Name=mRNA_L-elsbetiae_contig8148.17146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig8148:5690..8158+ (Laminarionema elsbetiae ELsaHSoW15)back to top |