mRNA_L-elsbetiae_contig813.17127.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig813.17127.1
Unique NamemRNA_L-elsbetiae_contig813.17127.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig813.17127.1 vs. uniprot
Match: D8LKA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA3_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 5.760e-84
Identity = 180/263 (68.44%), Postives = 191/263 (72.62%), Query Frame = 1 
Query:    1 MGEFGSNRAAWLIAGFLGRKFMKASDLLGRWSVLPVLAVACCVWNKWKASQLEGKLEQAKLEEVRRSTRRQLHILRKKSAAGAQPLDSTQRR--------------PGDRLGGIPSSSLSTTPKQXXXXXXXXXXXXXXXXXXXXXTSVAAP----APKDALASELWAWLGGVGSGR-SCSADRPK-RPSQRSGG-------GSEWRGAFYNRMGNVPRRNAFKTARGKVYLRGGRKGAGGSSGGGAEAPPIGGLAPVREEDE 708
            MGEFGSNRAAWLIAGFLGRKFMK  D LGRWSV+PVLAVA C+WNKW+A QLEGKLEQ KLEEVRRSTRRQL +LR                              PGDRLGGIPS+S+ST    XXXXXXXXXXXXXXXXXXXXX          APKDALASELWAWLGGVGSGR SCSADRPK   S RSG          EWRGAFYNRMGN+PRRNAFKTARGKVYLRGGR G+GG+  G  +APP+GGLA VREEDE
Sbjct:    1 MGEFGSNRAAWLIAGFLGRKFMK--DFLGRWSVIPVLAVAACLWNKWRARQLEGKLEQCKLEEVRRSTRRQLQLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDRLGGIPSASISTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPKDALASELWAWLGGVGSGRRSCSADRPKCSSSPRSGXXXXXXXXSGEWRGAFYNRMGNLPRRNAFKTARGKVYLRGGRIGSGGTREG-VQAPPLGGLASVREEDE 260
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig813.17127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKA3_ECTSI5.760e-8468.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig813contigL-elsbetiae_contig813:28796..31452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_009520.1
Exons4
Model size729
Cds size729
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig813.17127.1prot_L-elsbetiae_contig813.17127.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig813 28796..31452 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.5461004-CDS-L-elsbetiae_contig813:28795..289681622816897.5461004-CDS-L-elsbetiae_contig813:28795..28968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig813 28796..28968 -
1691683895.7888799-CDS-L-elsbetiae_contig813:28795..289681691683895.7888799-CDS-L-elsbetiae_contig813:28795..28968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig813 28796..28968 -
1622816897.5567594-CDS-L-elsbetiae_contig813:29559..299261622816897.5567594-CDS-L-elsbetiae_contig813:29559..29926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig813 29560..29926 -
1691683895.803098-CDS-L-elsbetiae_contig813:29559..299261691683895.803098-CDS-L-elsbetiae_contig813:29559..29926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig813 29560..29926 -
1622816897.5666506-CDS-L-elsbetiae_contig813:30930..310441622816897.5666506-CDS-L-elsbetiae_contig813:30930..31044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig813 30931..31044 -
1691683895.813596-CDS-L-elsbetiae_contig813:30930..310441691683895.813596-CDS-L-elsbetiae_contig813:30930..31044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig813 30931..31044 -
1622816897.5765657-CDS-L-elsbetiae_contig813:31377..314521622816897.5765657-CDS-L-elsbetiae_contig813:31377..31452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig813 31378..31452 -
1691683895.8239322-CDS-L-elsbetiae_contig813:31377..314521691683895.8239322-CDS-L-elsbetiae_contig813:31377..31452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig813 31378..31452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig813.17127.1

>prot_L-elsbetiae_contig813.17127.1 ID=prot_L-elsbetiae_contig813.17127.1|Name=mRNA_L-elsbetiae_contig813.17127.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
MGEFGSNRAAWLIAGFLGRKFMKASDLLGRWSVLPVLAVACCVWNKWKAS
QLEGKLEQAKLEEVRRSTRRQLHILRKKSAAGAQPLDSTQRRPGDRLGGI
PSSSLSTTPKQQQEQRQHLSPTAAAAAAANGSTSVAAPAPKDALASELWA
WLGGVGSGRSCSADRPKRPSQRSGGGSEWRGAFYNRMGNVPRRNAFKTAR
GKVYLRGGRKGAGGSSGGGAEAPPIGGLAPVREEDEAGIVAG*
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mRNA from alignment at L-elsbetiae_contig813:28796..31452-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig813.17127.1 ID=mRNA_L-elsbetiae_contig813.17127.1|Name=mRNA_L-elsbetiae_contig813.17127.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2657bp|location=Sequence derived from alignment at L-elsbetiae_contig813:28796..31452- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGAATTTGGTTCGAATAGAGCAGCGTGGCTGATAGCTGGCTTCCT
AGGGCGCAAGTTCATGAAGGCGAGTGTCAGTCTACTGCGTTCGTGAGACA
CCCTACAAATCGTCGTATCGCCACGAGCAAACTCCCCCACCCCCTCGTAT
GAAGACAGCAAAGGAGGAGAGTTGCCATCCTCTGATTTTCAGAACCGGCG
AACGCCAAGAGTGAAGGCACGCTCTGGATTTTGATGCAGCGTGTGCAGCG
TCTATGGGTATTGCCGCGTCCGATGGAAGGTTTGCGCAGGCAGCTCTTGT
GTTTTCCGGAAGTAGTAGTCTATCTCCTCTCTGAACTTTATTTGACTCCC
TCTCTCTCCCCGACGCCTTGACGCGCGTCGACGTTATTGCACTTACTCTT
CTGTGCAGGATCTCCTGGGGCGATGGAGCGTACTCCCGGTGTTGGCCGTG
GCTTGCTGCGTTTGGAACAAATGGAAAGCGAGTCAGCTAGAGGGAAAGTT
GGAGCAGGCCAAGCTTGAGGAGGTAGGCACGGGAGGCGCATACGAACGAA
AAATGAAAAAATAGAGTCGCGTGCTCGTCACAAAGAAGGTGACGCACCCG
ATCAAAAGCTGCATTTCATTCGTGGTGTTCTCTGTCTTCATCTTTCTCTT
GGCATATAGTCTATTCCTCCACCGCTGCCTTCTAACTGCTGTGCCAGAGA
CAATGCAAATATTTATGTGCGTCCTGGCGCAAGCAACTTTCCCCTCCTCT
TGTGTCTGGCACTCTGGCACACAAGAGGCGCTTTTTTTTCAAACGGCCGA
TCTTTTACAGCCTCGTCATCATGAGGACACTCCATACACTCCAATCTACT
TATCCTATCTCCTTGAATGCGGGGTGTGTTGTGGCAGTCTCTAAAGACGA
GAAAGGCACGAGAGTAACAAGGCGTTTGTCTTTCACGTGCTGCTGATGCT
GGATGACACCATATGGCGCACGCTTTGCCTTTGTGTGGGTTTGGCATTTA
TAATGTTTCCGGATGCCGCAGCTGTAAAAGAGTGAAGAATGTAACCTGCA
TCTAGTTGACGCGTGGAGTCGTTGCCAGCTTTGGTACATATGTGCACTCA
CTCTCTTCTCTATGCGCGGCTGTTGAGAGGAATCATGGTTTACCCTGCTG
TTGTATTTCACCAGCTTTGTGAATTGTCCTCACAAGGGATAAGCAGGCGG
GAACCCTCATTTATATTGAACCCTCAAAATTGAATCCTTATTCCACCAAA
TCGAGCACCGGTTGGTATTGTCTGTGGGATGTGGAACGAAACTGTTTTAT
TTCCAAGACGCTGGCATGTTCGCTGTGCCTTCTCTTGTATTGCTGTATTA
TACTGTTTTACAACGTGTGCCAGAGAGTTGAGTCCAGACACAGAAAAACG
TCACGGGTCGGAAGGTTTTTCTCGTCACTGCGGGGTTTCTGCATGGTATA
CGGAGTATGATCAGCAGTTTTCACCTCATACTTTTCTGGCGGTGTTTTTC
TGTTCTACTCTTTGTTTTACAATCAGGTTCGGCGGAGCACCCGACGACAG
CTGCACATCCTGCGGAAAAAGTCAGCAGCGGGGGCACAACCACTAGACAG
CACACAGCGACGGCCCGGCGACCGGCTCGGCGGCATCCCGAGCTCCTCGC
TGTCGACGACGCCGAAGCAGCAGCAAGAACAAAGACAGCACCTGTCTCCG
ACAGCTGCCGCCGCCGCGGCCGCCAACGGCAGCACCAGCGTCGCAGCACC
AGCGCCCAAAGATGCTTTGGCTTCGGAGCTGTGGGCATGGCTGGGGGGCG
TCGGGTCCGGGCGGTCCTGCAGCGCTGACCGGCCCAAGCGACCGTCCCAA
CGATCTGGAGGGGGGAGCGAGTGGAGGGGCGCGTTTTACAACCGTGAGTG
GGGTGGAGAGCAGCGAGCGAGCCGCGCAGTCGCGTAACAACTGCCGTGAC
GAGCGGAGCGTAAAGATTGATCGATTTTCTCTTTCGTGCGAACCAAACAT
GATTGTGTTCCAGGATGGATATGCCTGGAGTGTAAGAATGAAAAAAACGA
AAATGGTCTTCCCTCGTCGACCGCAAGTGCACTGCTGCTGTAACAGTGCG
GGAGAATGCACAGTGGTGCGATACTTTCTCACTGGCCAATTTCTCGACAT
TGGAAAAAGGGTGCCGCTCTCGAAAACCCGACTTTCGGGAAAGATGTCGG
CCGAGATATTTCCGATGACACCCTCTCCGATATATCACAACACTCCCTAG
TATCGAGAAATCGAGCCGTCATAAACCACCGGACCCCTGCGTGTTGTTGT
CCCGCATTGTTGTGGTTTACTCCTGCAAGGACCCGCCGTACACGTTAGTC
CCGCACGCCACACACACACCTTTTCCACCAAAACCCCCCATCACCTGCTG
ATCCCACCCCTCCCCCCCACCCAATCCACCGGCCCTGCCATCATTCGTCG
TTGGTTAACCAATCGACCAATTTCCAACACGCAGGCATGGGTAACGTCCC
GCGACGAAACGCGTTCAAGACCGCAAGAGGAAAGGTTTACTTAAGAGGCG
GCCGCAAGGGGGCGGGGGGCTCCTCTGGCGGAGGGGCGGAGGCACCGCCC
ATCGGCGGTCTCGCACCAGTACGGGAAGAGGACGAGGCGGGCATCGTCGC
CGGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig813:28796..31452-

>mRNA_L-elsbetiae_contig813.17127.1 ID=mRNA_L-elsbetiae_contig813.17127.1|Name=mRNA_L-elsbetiae_contig813.17127.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig813:28796..31452- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGAATTTGGTTCGAATAGAGCAGCGTGGCTGATAGCTGGCTTCCT
AGGGCGCAAGTTCATGAAGGCGAGTATGGGCGAATTTGGTTCGAATAGAG
CAGCGTGGCTGATAGCTGGCTTCCTAGGGCGCAAGTTCATGAAGGCGAGT
GATCTCCTGGGGCGATGGAGCGTACTCCCGGTGTTGGCCGTGGCTTGCTG
CGTTTGGAACAAATGGAAAGCGAGTCAGCTAGAGGGAAAGTTGGAGCAGG
CCAAGCTTGAGGAGGATCTCCTGGGGCGATGGAGCGTACTCCCGGTGTTG
GCCGTGGCTTGCTGCGTTTGGAACAAATGGAAAGCGAGTCAGCTAGAGGG
AAAGTTGGAGCAGGCCAAGCTTGAGGAGGTTCGGCGGAGCACCCGACGAC
AGCTGCACATCCTGCGGAAAAAGTCAGCAGCGGGGGCACAACCACTAGAC
AGCACACAGCGACGGCCCGGCGACCGGCTCGGCGGCATCCCGAGCTCCTC
GCTGTCGACGACGCCGAAGCAGCAGCAAGAACAAAGACAGCACCTGTCTC
CGACAGCTGCCGCCGCCGCGGCCGCCAACGGCAGCACCAGCGTCGCAGCA
CCAGCGCCCAAAGATGCTTTGGCTTCGGAGCTGTGGGCATGGCTGGGGGG
CGTCGGGTCCGGGCGGTCCTGCAGCGCTGACCGGCCCAAGCGACCGTCCC
AACGATCTGGAGGGGGGAGCGAGTGGAGGGGCGCGTTTTACAACCGTTCG
GCGGAGCACCCGACGACAGCTGCACATCCTGCGGAAAAAGTCAGCAGCGG
GGGCACAACCACTAGACAGCACACAGCGACGGCCCGGCGACCGGCTCGGC
GGCATCCCGAGCTCCTCGCTGTCGACGACGCCGAAGCAGCAGCAAGAACA
AAGACAGCACCTGTCTCCGACAGCTGCCGCCGCCGCGGCCGCCAACGGCA
GCACCAGCGTCGCAGCACCAGCGCCCAAAGATGCTTTGGCTTCGGAGCTG
TGGGCATGGCTGGGGGGCGTCGGGTCCGGGCGGTCCTGCAGCGCTGACCG
GCCCAAGCGACCGTCCCAACGATCTGGAGGGGGGAGCGAGTGGAGGGGCG
CGTTTTACAACCGCATGGGTAACGTCCCGCGACGAAACGCGTTCAAGACC
GCAAGAGGAAAGGTTTACTTAAGAGGCGGCCGCAAGGGGGCGGGGGGCTC
CTCTGGCGGAGGGGCGGAGGCACCGCCCATCGGCGGTCTCGCACCAGTAC
GGGAAGAGGACGAGGCGGGCATCGTCGCCGGCTGAGCATGGGTAACGTCC
CGCGACGAAACGCGTTCAAGACCGCAAGAGGAAAGGTTTACTTAAGAGGC
GGCCGCAAGGGGGCGGGGGGCTCCTCTGGCGGAGGGGCGGAGGCACCGCC
CATCGGCGGTCTCGCACCAGTACGGGAAGAGGACGAGGCGGGCATCGTCG
CCGGCTGA
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