mRNA_L-elsbetiae_contig8129.17124.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8129.17124.1
Unique NamemRNA_L-elsbetiae_contig8129.17124.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8129.17124.1 vs. uniprot
Match: D7G7K6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7K6_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.030e-38
Identity = 95/176 (53.98%), Postives = 101/176 (57.39%), Query Frame = 2 
Query:   68 KKQARRQARREKAAKMAPRPTGLLRPAVHHFPTIK-----------------------------------------EESFTTNVARLKEYRANLIIFPRGSKHLPKNGDSPLEEQAAATQ----------------------EMSGANLHSERRIARNEHKLSGIRIRQKE-KTKK 403
            KK+ARRQAR+EKAAKMAPRPT LLRPAVH  PTIK                                         EESF  NVARLKEYRANLIIFPRGSKHLPK GDS LEEQ AATQ                      EM+  +LHSERR+ARNE KL+GIRIRQKE KTKK
Sbjct:   30 KKKARRQARQEKAAKMAPRPTQLLRPAVH-CPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSLHSERRVARNEFKLAGIRIRQKEEKTKK 204
[Close]
BLAST of mRNA_L-elsbetiae_contig8129.17124.1 vs. uniprot
Match: A0A7S4PSP4_9DINO (60S ribosomal protein L13 (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PSP4_9DINO)

HSP 1 Score: 66.6 bits (161), Expect = 3.460e-11
Identity = 48/118 (40.68%), Postives = 55/118 (46.61%), Query Frame = 2 
Query:   71 KQARRQARREKAAKMAPRPTGLLRPAVH---------------------------------------HFPTIKE-ESFTTNVARLKEYRANLIIFPRGSKHLPKNGDSPLEEQAAATQ 304
            K+ARR AR+ KAA +APRP GLLRP VH                                       H  T K  E+   NVARL EY+A LI+FPR S   PK GDS   E +AATQ
Sbjct:   10 KKARRLARKAKAAAVAPRPVGLLRPVVHCSTQKYSSKIRAGRGFSLDELKEAGISKKLARTIGIAVDHRRTNKSVEAMQANVARLNEYKAKLIVFPRKSNQKPKKGDSSPAETSAATQ 127
[Close]
BLAST of mRNA_L-elsbetiae_contig8129.17124.1 vs. uniprot
Match: M3CD76_SPHMS (60S ribosomal protein L13 n=5 Tax=Mycosphaerellaceae TaxID=93133 RepID=M3CD76_SPHMS)

HSP 1 Score: 59.3 bits (142), Expect = 5.480e-8
Identity = 46/120 (38.33%), Postives = 55/120 (45.83%), Query Frame = 2 
Query:   68 KKQARRQARREKAAKMAPRPTGLLRPAVHHFPTIK-----------------------------------------EESFTTNVARLKEYRANLIIFPRGSKHLPKNGDSPLEEQAAATQ 304
            +KQ RR AR++KAAK+APRP   LRP V   PTIK                                         +ES   NVARLKEY+  L++FPR  K   KNGD+  EE  AA Q
Sbjct:   31 RKQRRRNARQDKAAKVAPRPVDRLRPVVR-CPTIKYNRRVRAGRGFSLAELKEAGIPRKLAPTIGISVDPRRQNLSDESLAANVARLKEYKQRLVLFPRKLKS-QKNGDASKEEVEAAKQ 148
[Close]
BLAST of mRNA_L-elsbetiae_contig8129.17124.1 vs. uniprot
Match: A0A7S1HPI4_9EUKA (60S ribosomal protein L13 n=2 Tax=Prymnesiophyceae TaxID=2608131 RepID=A0A7S1HPI4_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 1.760e-7
Identity = 59/170 (34.71%), Postives = 72/170 (42.35%), Query Frame = 2 
Query:   71 KQARRQARREKAAKMAPRPT-GLLRPAVH---------------------------------------HFPTIK-EESFTTNVARLKEYRANLIIFPRGSKHLPKNGDSPLEEQAAA----------------------TQEMSGANLHSERRIARNEHKLSGIRIRQKE 391
            K+ RR  R+EKAAK APRP+ G LRP VH                                       H  T K EES +TNV RLK Y+A L+IFPR +    KNGDS   E A A                      T+EM  A  ++  R AR + +L GIR + KE
Sbjct:   31 KKIRRDLRKEKAAKNAPRPSSGSLRPLVHCPTQKYNSKVKLGRGFTLEELKAAGINRKFAQTVGIAVDHRRTNKCEESLSTNVDRLKSYKARLVIFPRRAGVF-KNGDSSAAEIAEAQKIDVDITSMPKRAEAVTFTTVTEEMKAAQGYAALRRARTDARLVGIRKKMKE 199
[Close]
BLAST of mRNA_L-elsbetiae_contig8129.17124.1 vs. uniprot
Match: A0A4S2N1Z8_9PEZI (60S ribosomal protein L13 n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2N1Z8_9PEZI)

HSP 1 Score: 55.1 bits (131), Expect = 1.800e-6
Identity = 31/54 (57.41%), Postives = 33/54 (61.11%), Query Frame = 2 
Query:  143 PAVHHFPTIKEESFTTNVARLKEYRANLIIFPRGSKHLPKNGDSPLEEQAAATQ 304
            P  H      EES   NVARLKEYR+NLIIFPR +K  PK GDS  EE   A Q
Sbjct:   96 PVDHRRRNTSEESLQINVARLKEYRSNLIIFPRKAK-APKKGDSSAEEIKEARQ 148
[Close]
BLAST of mRNA_L-elsbetiae_contig8129.17124.1 vs. uniprot
Match: A0A6V2FIA8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2FIA8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.410e-6
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:  101 KAAKMAPRPTGLLRPAVHHFPTIK-EESFTTNVARLKEYRANLIIFPRGSKHLPKNGDSPLEEQAAATQEMSGANL 325
            KAA M P+    +   V H  + + EES   NVARL EY+A L++FPR   + PK GD+ +E+  AATQ +SG  L
Sbjct:   86 KAAGMTPKYAATVGIVVDHRRSNRSEESLAANVARLTEYKAKLVVFPRKRLNKPKAGDASIEDIKAATQ-LSGTVL 160
[Close]
BLAST of mRNA_L-elsbetiae_contig8129.17124.1 vs. uniprot
Match: A0A7S2UYA0_9STRA (60S ribosomal protein L13 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYA0_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.490e-6
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 2 
Query:  146 AVHHFPTIKE-ESFTTNVARLKEYRANLIIFPRGSKHLPKNGDSPLEEQAAATQ 304
            AV H  T K  E+   N+ARL E++A L++FPR S   PKNGDS  EE + ATQ
Sbjct:   96 AVDHRRTNKSVEAMQANIARLAEFKARLVVFPRKSNQKPKNGDSAPEETSQATQ 149
[Close]
BLAST of mRNA_L-elsbetiae_contig8129.17124.1 vs. uniprot
Match: A0A170QYQ1_9ASCO (60S ribosomal protein L13 n=1 Tax=Sugiyamaella lignohabitans TaxID=796027 RepID=A0A170QYQ1_9ASCO)

HSP 1 Score: 53.5 bits (127), Expect = 6.730e-6
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 2 
Query:  176 ESFTTNVARLKEYRANLIIFPRGSKHLPKNGDSPLEEQAAATQEMSGA 319
            E F TNV RLKEY+A LI+FPR +   PK+GD+  EE AAA Q++S A
Sbjct:  107 EGFETNVNRLKEYKAKLIVFPRKAGK-PKSGDASAEEIAAAKQQLSVA 153
[Close]
BLAST of mRNA_L-elsbetiae_contig8129.17124.1 vs. uniprot
Match: A0A2J5HVC9_9EURO (60S ribosomal protein L13 n=3 Tax=Aspergillus TaxID=5052 RepID=A0A2J5HVC9_9EURO)

HSP 1 Score: 53.5 bits (127), Expect = 7.590e-6
Identity = 44/125 (35.20%), Postives = 55/125 (44.00%), Query Frame = 2 
Query:   47 VYLV*SQKKQARRQARREKAAKMAPRPTGLLRPAVHHFPTIK-----------------------------------------EESFTTNVARLKEYRANLIIFPRGSKHLPKNGDSPLEEQAAA 298
            V+     +K  RR+ARR KAA +APRP   LRP VH  PT+K                                         +ES   NVARL++Y+A LI+FPR S    K  DS +EE  AA
Sbjct:   24 VHFEQPSRKLRRREARRSKAAAVAPRPVDKLRPVVH-CPTVKYNRRVRAGRGFTLAELKEAGIPKKLARTVGIAVDHRRVNYSKESLVANVARLQDYKARLILFPRKSGQFKKL-DSSVEEVNAA 146
[Close]
BLAST of mRNA_L-elsbetiae_contig8129.17124.1 vs. uniprot
Match: UPI0007381FDD (60S ribosomal protein L13 n=2 Tax=Opiinae TaxID=68883 RepID=UPI0007381FDD)

HSP 1 Score: 51.6 bits (122), Expect = 3.560e-5
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 2 
Query:  176 ESFTTNVARLKEYRANLIIFPRGSKHLPKNGDSPLEEQAAATQ 304
            ES  TNV RL+EY+ANLI+FP+  K  PK GDS  EE   ATQ
Sbjct:  106 ESLQTNVQRLREYKANLILFPKNEKK-PKKGDSTAEECKMATQ 147
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8129.17124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G7K6_ECTSI1.030e-3853.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4PSP4_9DINO3.460e-1140.6860S ribosomal protein L13 (Fragment) n=1 Tax=Alexa... [more]
M3CD76_SPHMS5.480e-838.3360S ribosomal protein L13 n=5 Tax=Mycosphaerellace... [more]
A0A7S1HPI4_9EUKA1.760e-734.7160S ribosomal protein L13 n=2 Tax=Prymnesiophyceae... [more]
A0A4S2N1Z8_9PEZI1.800e-657.4160S ribosomal protein L13 n=1 Tax=Ascodesmis nigri... [more]
A0A6V2FIA8_9STRA3.410e-644.74Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2UYA0_9STRA4.490e-651.8560S ribosomal protein L13 n=1 Tax=Fibrocapsa japon... [more]
A0A170QYQ1_9ASCO6.730e-658.3360S ribosomal protein L13 n=1 Tax=Sugiyamaella lig... [more]
A0A2J5HVC9_9EURO7.590e-635.2060S ribosomal protein L13 n=3 Tax=Aspergillus TaxI... [more]
UPI0007381FDD3.560e-560.4760S ribosomal protein L13 n=2 Tax=Opiinae TaxID=68... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8129contigL-elsbetiae_contig8129:4514..7695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue7.2e-25
Seed eggNOG ortholog2880.D7G7K6
Preferred nameRPL13
KEGG koko:K02873,ko:K10755
KEGG Pathwayko03010,ko03030,ko03420,ko03430,map03010,map03030,map03420,map03430
KEGG ModuleM00177,M00179,M00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0006914,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009506,GO:0009719,GO:0009725,GO:0009735,GO:0009986,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0016236,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0030312,GO:0031090,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0055044,GO:0061919,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG4352@1,KOG3295@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03032,ko03036,ko03400
Ec32 ortholog descriptionRibosomal protein L13e
Ec32 orthologEc-22_002060.1
Exons3
Model size406
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8129.17124.1prot_L-elsbetiae_contig8129.17124.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8129 4514..7583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.162243-CDS-L-elsbetiae_contig8129:4513..46151622816897.162243-CDS-L-elsbetiae_contig8129:4513..4615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8129 4514..4615 -
1691683895.4875317-CDS-L-elsbetiae_contig8129:4513..46151691683895.4875317-CDS-L-elsbetiae_contig8129:4513..4615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8129 4514..4615 -
1622816897.175024-CDS-L-elsbetiae_contig8129:5895..60271622816897.175024-CDS-L-elsbetiae_contig8129:5895..6027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8129 5896..6027 -
1691683895.504639-CDS-L-elsbetiae_contig8129:5895..60271691683895.504639-CDS-L-elsbetiae_contig8129:5895..6027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8129 5896..6027 -
1622816897.1874437-CDS-L-elsbetiae_contig8129:7523..75831622816897.1874437-CDS-L-elsbetiae_contig8129:7523..7583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8129 7524..7583 -
1691683895.5141423-CDS-L-elsbetiae_contig8129:7523..75831691683895.5141423-CDS-L-elsbetiae_contig8129:7523..7583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8129 7524..7583 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.1997015-UTR-L-elsbetiae_contig8129:7583..76951622816897.1997015-UTR-L-elsbetiae_contig8129:7583..7695Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8129 7584..7695 -
1691683895.523202-UTR-L-elsbetiae_contig8129:7583..76951691683895.523202-UTR-L-elsbetiae_contig8129:7583..7695Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8129 7584..7695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8129.17124.1

>prot_L-elsbetiae_contig8129.17124.1 ID=prot_L-elsbetiae_contig8129.17124.1|Name=mRNA_L-elsbetiae_contig8129.17124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MAPRPTGLLRPAVHHFPTIKEESFTTNVARLKEYRANLIIFPRGSKHLPK
NGDSPLEEQAAATQEMSGANLHSERRIARNEHKLSGIRIRQKEKTKK*
back to top

mRNA from alignment at L-elsbetiae_contig8129:4514..7695-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8129.17124.1 ID=mRNA_L-elsbetiae_contig8129.17124.1|Name=mRNA_L-elsbetiae_contig8129.17124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3182bp|location=Sequence derived from alignment at L-elsbetiae_contig8129:4514..7695- (Laminarionema elsbetiae ELsaHSoW15)
GAAGTGGTGCAAGTGTGAGGGAGTCACTGTTTACTCGTGGTAAAATGTAT
ATCTAGTCTAGTCACAGAAAAAGCAGGCGCGCCGCCAGGCAAGGCGGGAG
AAGGCCGCTAAGATGGCGCCAAGACCTACTGGGCTCCTCCGGCCGGCAGT
GCATCACTTCCCCACCATCAAGGTGAGCATCTTTTTATTGTTGTCTCTAA
CTCCAGTCGTATACCCTTGTGAGGATAGCCTCTTTGCACTTTGCTGCGTA
TAGACTAGATACATGTTCAAGACTAGATATGTATCTATTATATGTAGCTG
CGTATGTATGATAACACGCATGATGAGTCAAATGTGGCAGTGCTATGTAG
CTAGAGCCAAGTGATGAGAGTTTTTCTTCTCTCATTCTTGTCGTCGTAGG
CAGAACAAAAGCAAAACGGGGCCGCGTATCTCCGCAGCAGTGGCTATACA
AACACCTTCAGGTGCATGCACCTTTTGCCACCATCCGTTCTGCACAAAAA
TCCTTTACAATAGTTCGTGGCTGATTTCATCTGCGGAGCCAAAGGTCAGT
TCGGTTCTCTTCTATGCGTCAAGTGCCTTTTCAGTGGTGCTTGCCGTGAT
GTTCACCCATTCATAACCTCGGCGGTGTTAACACGGTATATGTATTTTGT
GTCTCCTGCACCCGTGAAGTCGGGCTCGAGAGCTGCTTTTGTAGTGCTAC
CATTGTGTGTAGTGTGCGGGTGGAATTGTCTATATTTACAACAGCGGTAG
TCCCACCTCCTACTAAAATTTGTCTCGGGATGCCAAATCATGCCGAGAAA
ACAGGCCATGTGTGCAGATAATAAGAGGCTCGGCTTGGCTTTCAGTCGTG
GACGACCTTTCGCTCTTCTCCGTTTCGCTGTCGGTAGTGGGAAGCGGGAA
CTCATCTGAACGTCTGCTCTCTCTAATGCCTCCACGATTGCTCGCCGGGG
GTCCGTGAGATGTTTCGCTCTTTTATGTACCTACCTGGTCACATACGCCC
CATATCCCGGATTCCAACGTCGCGAAGCTTGCCGGTGTCGATGCTGTTGG
GTGTGGTGTGCGACGGGTCCGGGAAAATCTTGTGGATTCTGTTGAGCTGT
CAAAGAAAAAGCGGGCTGCCTTTTTTCGCGTTAAAAATGTAGGTGCCCAG
CATTGCTTTCCCTGGGGGCTGCTGCTGGAAGCACACTCACTCTTTCTTTG
GCAGCGGAGGGTGGTTACTCCGGACGTGACGTCATCCTTTCTCAAGTGTT
TTGAATTAAAAATCAGTCGAATCCAAGAACCTGTAGACAAGAGGCAGGCG
GAGCTCCGTCGCGAGTGAAAGTTCCAAATAGTGATGTAGTGTACCAATGT
CTTCGATTCTGCGTCGTCGCCGTATATATCATGTGCAAGAGAATCCTGCC
CTCGAAAGACGGGGAGCAGGTGTAGTAAAGTATCACAGGTACATACTTCT
AGGAAGTGTTTTTACATTAAGATGATTTCCTTTAGCCTGGCTGCTTTGTT
CATGCATAGGGTTGCACCTTCTGATGAAGAATGCTCCTTGCGGTGCCAGG
ATTAAAACAAGATGGGAACAGAGCGGAGACGTCTTTCAACTCTTGTGTTG
TGTCACATTTCCTCAAGGGTCGATTATTGTTGTCGTACGCTGTCTTGTCT
CTCGCCCTGTGCGCGCAGGAGGAGTCGTTCACGACCAACGTTGCTCGCCT
AAAAGAGTACCGCGCCAACCTCATAATCTTCCCCCGCGGCAGCAAGCACC
TGCCCAAGAACGGCGACTCACCCCTCGAGGAGCAGGCCGCGGCTACCCAG
GTGAGGCTAGAGGTGTCTGTTTAGAGAAAAGGCGAAAGGATGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTCTTGACATTAAAAACCATCCCGATCTCTCC
ATCCAGTACCTCCATGAGTCTTTACTGATCCAACAACACTGACGCGGTCG
ATTCCCGTGGTCACAGGATAACTCTGAACTTATCCTTATATCTAAGGGTA
TACTGAAAAATGGAGTGTATTGCCTGATTTTATTTTTGTTCGCGGTGCCC
CTTTCTGTGTACTTTCTGCTGGATTCGTGCTTGAATCGCGTGTAGCATAC
CTATATCAACGAGGGTAAACCAGGAAGGCTCTTTTTTCGCTTTTGTGGTT
GTCCTGTGCCCTTGTCTAGGGTGCTCGACTGTTTTTGGATCGGCCTCAGT
TGTGTGTGTGTGTGTGCGTGTAAGTTTTTCGGTTCCGGACAAAACACGGA
AGGTACCATGCTCCCACAACAAGCATTGCGTGGATGAGAAAGCCACGAAC
TATGCCCCTCGTCAAGGCCGACAAGCGCGTGGAGTTCCTCGCCATCACTC
CGGTAAGTCGGGAGGGTGTATTTGCCTTGCGCGTAGGTTGGCCCGCCTCG
AACCGACGACCTGATATCCATCCGTTTGCCAGATTTTTGAACCGTCTCGC
GATCCCCGTATTTCATCCCCAGTCTTCTTTTGTTATTTGTTGTATTTTTT
TGTGACTAAAGGAAGGATAGAGTTCCAATTGTAGAGTTCATTCTGCGCCC
GGCGTACCGTCGAAACGATGTCCCATCATTTAGTTGAATGTACTCCGCGC
GTGTCTTGCGAGCCGCGCTAGAATGGTGGTTTGGTTGCCGAAACATTCAC
GAAAACACTTATTTCGCCGTGTTTTGAGTCTGTCGTGGTTTGCCGGCGTT
GCCGTGATGCCGTTCTCCCGTACGTCCTTGGGCGAAAACATGTATCTCGA
ACACGTGTGGACCGCCTCCGCGAAGCGTTCCTGTAATTCCTGTCTAAATA
TATATAGAAAAAAAAGACAGGGATTCGGTAACCTTAACCTCAAACCGACC
CCCCGCCAGCATTTCCCATTACCTCCAGTAAATACCTGCGAAGGCTACAA
ACACACGTGTCTCTGAAAACACTGCGAGTAACGTTGTACCCGATGTCTTT
CCGCTCCGCACCCAAGCGGCTTGTGTTCAGCGTCTTTGCGTGCATGCTAC
TTTTATGTAATTGTGAACTCGATTCGAAACCCCCCTCCACCCCCCCCCCG
CACGCGCGTGCCTGAACACTGAAACCGCAGGAGATGTCCGGCGCTAACCT
CCACAGCGAGAGGCGCATTGCCCGCAACGAGCACAAGCTGTCGGGCATCC
GCATCCGCCAGAAGGAGAAGACGAAGAAGTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8129:4514..7695-

>mRNA_L-elsbetiae_contig8129.17124.1 ID=mRNA_L-elsbetiae_contig8129.17124.1|Name=mRNA_L-elsbetiae_contig8129.17124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig8129:4514..7695- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCCAAGACCTACTGGGCTCCTCCGGCCGGCAGTGCATCACTTCCC
CACCATCAAGATGGCGCCAAGACCTACTGGGCTCCTCCGGCCGGCAGTGC
ATCACTTCCCCACCATCAAGGAGGAGTCGTTCACGACCAACGTTGCTCGC
CTAAAAGAGTACCGCGCCAACCTCATAATCTTCCCCCGCGGCAGCAAGCA
CCTGCCCAAGAACGGCGACTCACCCCTCGAGGAGCAGGCCGCGGCTACCC
AGGAGGAGTCGTTCACGACCAACGTTGCTCGCCTAAAAGAGTACCGCGCC
AACCTCATAATCTTCCCCCGCGGCAGCAAGCACCTGCCCAAGAACGGCGA
CTCACCCCTCGAGGAGCAGGCCGCGGCTACCCAGGAGATGTCCGGCGCTA
ACCTCCACAGCGAGAGGCGCATTGCCCGCAACGAGCACAAGCTGTCGGGC
ATCCGCATCCGCCAGAAGGAGAAGACGAAGAAGTAGGAGATGTCCGGCGC
TAACCTCCACAGCGAGAGGCGCATTGCCCGCAACGAGCACAAGCTGTCGG
GCATCCGCATCCGCCAGAAGGAGAAGACGAAGAAGTAG
back to top