mRNA_L-elsbetiae_contig8127.17123.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8127.17123.1
Unique NamemRNA_L-elsbetiae_contig8127.17123.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8127.17123.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 8.070e-39
Identity = 100/152 (65.79%), Postives = 105/152 (69.08%), Query Frame = 1 
Query:    1 VSAGGVAMAAWARAPPHRG--LTGVKNVVVRERRAAXXXXXXXXXXXXXXXXXXX--------GTVAVVTRDLPPKAYLDLSVCVERPRFQYSPAHAFALADMAKAMKLLLPPNLFPQVASGRRGAVVEAAQGQGQGHPVAVPPLAWWDAGR 426
            VSAGGVAM A ARAPPH G  LTGVK VV+ ER A XXXXXXXXXX                 G VAVVTRDLPPK YLDLSVCVERPRF++SPAH +ALAD+A A  LLLPPNLFPQVA G RG         G G  V VPPLAWWDAGR
Sbjct: 2021 VSAGGVAMVACARAPPHSGGSLTGVKVVVIDEREAXXXXXXXXXXXRGRQHAAPSEVAGGGGRGKVAVVTRDLPPKVYLDLSVCVERPRFEFSPAHTYALADLASAATLLLPPNLFPQVAPGSRGT--------GTGRDV-VPPLAWWDAGR 2163
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8127.17123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7K0_ECTSI8.070e-3965.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8127contigL-elsbetiae_contig8127:5238..8240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size428
Cds size405
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8127.17123.1prot_L-elsbetiae_contig8127.17123.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8127 5259..8240 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.0995224-UTR-L-elsbetiae_contig8127:5237..52581622816897.0995224-UTR-L-elsbetiae_contig8127:5237..5258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8127 5238..5258 +
1691683895.4387956-UTR-L-elsbetiae_contig8127:5237..52581691683895.4387956-UTR-L-elsbetiae_contig8127:5237..5258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8127 5238..5258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.1098907-CDS-L-elsbetiae_contig8127:5258..54351622816897.1098907-CDS-L-elsbetiae_contig8127:5258..5435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8127 5259..5435 +
1691683895.448548-CDS-L-elsbetiae_contig8127:5258..54351691683895.448548-CDS-L-elsbetiae_contig8127:5258..5435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8127 5259..5435 +
1622816897.1204684-CDS-L-elsbetiae_contig8127:6534..66601622816897.1204684-CDS-L-elsbetiae_contig8127:6534..6660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8127 6535..6660 +
1691683895.458535-CDS-L-elsbetiae_contig8127:6534..66601691683895.458535-CDS-L-elsbetiae_contig8127:6534..6660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8127 6535..6660 +
1622816897.1339242-CDS-L-elsbetiae_contig8127:8138..82401622816897.1339242-CDS-L-elsbetiae_contig8127:8138..8240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8127 8139..8240 +
1691683895.4689403-CDS-L-elsbetiae_contig8127:8138..82401691683895.4689403-CDS-L-elsbetiae_contig8127:8138..8240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8127 8139..8240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8127.17123.1

>prot_L-elsbetiae_contig8127.17123.1 ID=prot_L-elsbetiae_contig8127.17123.1|Name=mRNA_L-elsbetiae_contig8127.17123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MAAWARAPPHRGLTGVKNVVVRERRAAAAAPAPASASASASAAGGAGTVA
VVTRDLPPKAYLDLSVCVERPRFQYSPAHAFALADMAKAMKLLLPPNLFP
QVASGRRGAVVEAAQGQGQGHPVAVPPLAWWDAGR
back to top

mRNA from alignment at L-elsbetiae_contig8127:5238..8240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8127.17123.1 ID=mRNA_L-elsbetiae_contig8127.17123.1|Name=mRNA_L-elsbetiae_contig8127.17123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3003bp|location=Sequence derived from alignment at L-elsbetiae_contig8127:5238..8240+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTCCGCCGGAGGCGTCGCCATGGCCGCGTGGGCGAGAGCCCCCCCCCA
CCGCGGCCTGACCGGCGTCAAGAACGTCGTCGTCCGCGAGAGGCGGGCCG
CCGCCGCTGCGCCAGCACCAGCATCGGCATCAGCATCAGCGTCTGCAGCA
GGTGGAGCGGGGACGGTCGCGGTGGTAACCCGCGATCTGCCTCCTAAGGT
GGGTGGAGGGGGTGACGTGAGGCGGGAGGCGGGAGGTGCGGGCGGGGGGG
GGGGGGGGGGAGGGGTGCGAACAAAACGAAACCGAATGCGATGCCGGGGC
TTTCTTTTTTGTGTGTCGGCGTGCGGGAGGTTCACTGGCTACAGTGCCTC
GCCCTGTAGTTGTTTTGGAGTTATTTTTGGAGTTATTTTTGGAAGACGTG
GACTGGGGGAACGGTTGCCATGGTTGCTTTCGGCTTGAGTCAGCTCCCGC
GATCCCGCCCGCGCCCCTTTCCTCCGAGTGTTCGGCGGGAATCGTCCGCC
GGGTTGTGAAGGCGGACCCCCCCCTTTTGTCTCCGCCCCCGTTGCCCTCA
CTGCCGCTTTACGCCGCCACAACGGCCGTCGGTCGGGCGGCAGCAGGGCC
ACACCTGACTTCATTGTTGACGAGGGTGGGGAATGCTGAACCCTGATCGC
GATAAAAAAAAACCCTAGGCAGGCACCGCAGGAGGGGGTCCAACCCCCCC
CTCCTATGTGACCCCGGTTGGGTCGTCTAGCTACAGTAGAAGTGGAGGAT
GGGGGCCAGAGGGGCAGACGACAAAATCCAATAATGGGCAGATAAAAATA
AAATAAATAACTGCGCTGACCGCCGTAAGCGCGAATGAAGTACGGTACAC
ACACACACACACACACACACACACACACACACACACACGTTTCGTTTTTT
TTTCCTTCCGCGGCGTAGAGTGTGCCTTGTTTTGTGACCGCGGGCCCTCA
CGGATGTTTTGGATTGGCTAATGTGAGAAACAACAAACGACACACCCCGG
TGGTCGATCTGGCGTGGATCCGGCGGGCCTTCGAGCTTGGCAAGGGATGC
TGGATTGTCAAGATTTTCCACCACCACGGCGGGCATGAGCCAATGAGTGC
CCCCGGAGCCCCCCCCCCTTCCCCATAATAATACCGTTGCCGTGCCTCAA
TGTGATTTGTTTTCGGCTGAACATGTACATACATACAACTTTCAAGGAGG
TTGGGGCAATGCGTGGTCGACGGCAGCAACCAGGCACAAAGGAACAGCAA
AGTTGTAACCACGACTTCCACTCACTCCCCGAAACCCCCTCAAGCAGGCG
TACCTCGACCTGTCGGTGTGCGTCGAGCGTCCTCGGTTCCAGTACAGCCC
CGCGCACGCCTTCGCTTTGGCTGACATGGCCAAGGCGATGAAGCTTCTGC
TTCCCCCCAATCTGTTTCCCCAGGTAAGTTACTGCTGTAAAGTGCTTCCC
CCCCAATCTGTGTCCCCAGGCAAGTTACTGCTATAAAGTGCTTCCCCCCA
ATCTGTTTCCCCAGGTAAGTCACTGTTGTAGAGTGCTTCCCCCCAATCTG
TTTCCCCAGGTAAGTTACTGCTGTAAAGTGCTGTTGTCTGCTGCTGTTGT
TGTTGTTGTTGCTGTTGCTGTTGCCTTCACATTAAAAACCCGTTTCGATC
TCTCTATCCAGTACACCTCCACGAGTTCGTACGAATCCAACACTTACGCG
GTCGATTCCCGTGGTCACAGGATAAGGACCCTAAAACCGGTTTTTATGGG
AGCACAAAAGTTTATTTCGAGAAAAGTTGTTTTTTTCGTATTGTTGGACA
CTTTTCATCGCCAAGAGCTCGGAATCGTGCCTGCGCACCTCGAGAACAGT
TGAAGTTCTCGTCCAGGGATTTCTAGATCTCCTGCCCATTCTGGCAGACT
TCAAGTTTGGTTTTTCGTCGAGGAGCAAGATATGGCAACATCAACATTGT
GCCAACGTTGCAACAAAATGGCCTGTTCGTGCAAGAGTTTGCAAACTTTT
CGGCCGAAAATGTGTTTTTGGCGAAAAGCTGGCAAAACTTTGCCTTTCTT
GCTCCTTGACGAAAAATCAAACGTGAAATCTGCCAGAATGGGCAGGAGAT
CTAGAAACCTCTGGACGAGAGCTTCAACTGTTCTCTAGGTGCGCAGGCAC
GATTCCGAGCGCTCCTGGCGATGAAAAGTGCCCAACAATACGAAAAAAGC
AACTTTTCTCAAAAATAAACTTTCTGCTCCCATAAAAACCGGTGTAAGAA
AAATAATAAAATAAAAATAAAATAAAAATGAAGCGAAAGGTAGGTCACTC
CTGTCGACAGCGTGTGTGAAGCATGGCAAGAAAAGCAGGTCGGGTTCTAG
CCCCGCGCGGGGCAGCCTATAATTTTTGCCACCTCTCTGGGTGCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCTATCCCACTGCCTCCCCCA
CTCTACCCTTCTCTTCCTCNNNNNNNNNNAAAAAAAAGGGTGGGTTCTAG
CCCCCGCCGGGGGAGCCTATAATTTTTGCCCCCCCCCTGGGGGCCCCCCC
CCCCCCCCCCCCCCCCATCCTTGTAGGCTACTAGAGATACTATCCCAAAT
TATTACTCGTTTTCGGCCCCCCACAGAAGCAAGCATGTTTGCCTGTCCGC
CAGAAACATTCGCTTTTTCATTTTTGCCTTGTTTTTTTCTGTTGTTGCTC
TGCGGTGTATGGTATCTGCTTATCTCCCTCTAGGCCTTGACTCCGTTGGC
CATTTGTGGAGTTGCGGAGGAACAAAATTTGTTATCATACTGAGTTTAGT
GTAGAGAAAAATAAGGTGTAGGTAAAAAACAGGGAAAAAAGTAGCCAACG
GAGTCAAGGCCTGTCTCCCTCTCATCTTGTTTTTTGTTTTGCTTTGTCCA
GGTGGCGTCCGGGAGGAGGGGAGCCGTAGTAGAGGCGGCACAAGGTCAGG
GGCAGGGGCATCCCGTCGCGGTGCCCCCCTTGGCTTGGTGGGACGCCGGG
CGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8127:5238..8240+

>mRNA_L-elsbetiae_contig8127.17123.1 ID=mRNA_L-elsbetiae_contig8127.17123.1|Name=mRNA_L-elsbetiae_contig8127.17123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig8127:5238..8240+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGCGTGGGCGAGAGCCCCCCCCCACCGCGGCCTGACCGGCGTCAA
GAACGTCGTCGTCCGCGAGAGGCGGGCCGCCGCCGCTGCGCCAGCACCAG
CATCGGCATCAGCATCAGCGTCTGCAGCAGGTGGAGCGGGGACGGTCGCG
GTGGTAACCCGCGATCTGCCTCCTAAGATGGCCGCGTGGGCGAGAGCCCC
CCCCCACCGCGGCCTGACCGGCGTCAAGAACGTCGTCGTCCGCGAGAGGC
GGGCCGCCGCCGCTGCGCCAGCACCAGCATCGGCATCAGCATCAGCGTCT
GCAGCAGGTGGAGCGGGGACGGTCGCGGTGGTAACCCGCGATCTGCCTCC
TAAGGCGTACCTCGACCTGTCGGTGTGCGTCGAGCGTCCTCGGTTCCAGT
ACAGCCCCGCGCACGCCTTCGCTTTGGCTGACATGGCCAAGGCGATGAAG
CTTCTGCTTCCCCCCAATCTGTTTCCCCAGGCGTACCTCGACCTGTCGGT
GTGCGTCGAGCGTCCTCGGTTCCAGTACAGCCCCGCGCACGCCTTCGCTT
TGGCTGACATGGCCAAGGCGATGAAGCTTCTGCTTCCCCCCAATCTGTTT
CCCCAGGTGGCGTCCGGGAGGAGGGGAGCCGTAGTAGAGGCGGCACAAGG
TCAGGGGCAGGGGCATCCCGTCGCGGTGCCCCCCTTGGCTTGGTGGGACG
CCGGGCGGGTGGCGTCCGGGAGGAGGGGAGCCGTAGTAGAGGCGGCACAA
GGTCAGGGGCAGGGGCATCCCGTCGCGGTGCCCCCCTTGGCTTGGTGGGA
CGCCGGGCGG
back to top