mRNA_L-elsbetiae_contig8121.17119.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8121.17119.1
Unique NamemRNA_L-elsbetiae_contig8121.17119.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8121.17119.1 vs. uniprot
Match: D7FM82_ECTSI (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM82_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 5.390e-24
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1
Query:   13 EEIEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 141
            EE+EEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF
Sbjct:   89 EEMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 131          
BLAST of mRNA_L-elsbetiae_contig8121.17119.1 vs. uniprot
Match: A0A7S1U9V4_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9V4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.760e-18
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 1
Query:   10 EEEIEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 141
            EE+ EEM+ +GPAGKEWGGP RGG L EPTRFGDWERKGRC+DF
Sbjct:   96 EEDWEEMILDGPAGKEWGGPRRGGKLAEPTRFGDWERKGRCTDF 139          
BLAST of mRNA_L-elsbetiae_contig8121.17119.1 vs. uniprot
Match: A0A024U2R8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2R8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.280e-16
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    4 DEEEEIEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 141
            D+EE++E+M+  GPAG EWGGP RGG   EPTRFGDWE+KGRC DF
Sbjct:   49 DDEEDMEDMVMIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 94          
BLAST of mRNA_L-elsbetiae_contig8121.17119.1 vs. uniprot
Match: A0A6G0WXB9_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXB9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.710e-16
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    4 DEEEEIEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 141
            D+EE++E+M+  GPAG EWGGP RGG   EPTRFGDWE+KGRC DF
Sbjct:   50 DDEEDMEDMVVIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 95          
BLAST of mRNA_L-elsbetiae_contig8121.17119.1 vs. uniprot
Match: W4GYH8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYH8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 5.870e-16
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    4 DEEEEIEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 141
            D+EE++E+M+  GPAG EWGGP RGG   EPTRFGDWE+KGRC DF
Sbjct:   45 DDEEDMEDMVVIGPAGVEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 90          
BLAST of mRNA_L-elsbetiae_contig8121.17119.1 vs. uniprot
Match: A0A225W1X5_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W1X5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.860e-16
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    4 DEEEEIEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 141
            DE+++ E+M+  GP+G E+GGPTRGG L EPTRFGDWERKGRCSDF
Sbjct:   51 DEDDDGEDMVAIGPSGVEYGGPTRGGKLKEPTRFGDWERKGRCSDF 96          
BLAST of mRNA_L-elsbetiae_contig8121.17119.1 vs. uniprot
Match: A0A6A3LCQ3_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LCQ3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.140e-15
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1
Query:   19 IEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 141
            +E+M+  GP+G E+GGPTRGG L EPTRFGDWERKGRCSDF
Sbjct:   76 VEDMVAIGPSGAEYGGPTRGGKLKEPTRFGDWERKGRCSDF 116          
BLAST of mRNA_L-elsbetiae_contig8121.17119.1 vs. uniprot
Match: A0A7S3GRS8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRS8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.470e-15
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   16 EIEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 141
            E+EEM  EGPAG EW GPTRGG   EPTRFGDWERKGR SDF
Sbjct:   71 EMEEMFIEGPAGLEWNGPTRGGKRPEPTRFGDWERKGRASDF 112          
BLAST of mRNA_L-elsbetiae_contig8121.17119.1 vs. uniprot
Match: A0A835YQ12_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ12_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.490e-15
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    7 EEEEIEEMLQEGPAGK-EWGGPTRGGVLGEPTRFGDWERKGRCSDF 141
            EEE++E+M   GP G  E+GGPTRGG L EPTRFGDWERKGRC+DF
Sbjct:    4 EEEDMEQMFVPGPDGSMEYGGPTRGGKLAEPTRFGDWERKGRCTDF 49          
BLAST of mRNA_L-elsbetiae_contig8121.17119.1 vs. uniprot
Match: A0A2P4YG81_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YG81_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.660e-15
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1
Query:   19 IEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 141
             E+M+  GP+G E+GGPTRGG L EPTRFGDWERKGRCSDF
Sbjct:   53 XEDMVAIGPSGVEYGGPTRGGKLKEPTRFGDWERKGRCSDF 93          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8121.17119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM82_ECTSI5.390e-2497.67Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S1U9V4_9STRA2.760e-1879.55Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A024U2R8_9STRA2.280e-1669.57Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A6G0WXB9_9STRA4.710e-1669.57Succinate dehydrogenase assembly factor 4, mitocho... [more]
W4GYH8_9STRA5.870e-1669.57Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A225W1X5_9STRA6.860e-1671.74Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A6A3LCQ3_9STRA1.140e-1575.61Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S3GRS8_9STRA1.470e-1578.57Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A835YQ12_9STRA3.490e-1571.74Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A2P4YG81_9STRA3.660e-1575.61Succinate dehydrogenase assembly factor 4, mitocho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8121contigL-elsbetiae_contig8121:7056..7199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog2880.D7FM82
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Protein of unknown function (DUF1674)
EggNOG OGs2CZB4@1,2S9G4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size144
Cds size117
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.9295776-CDS-L-elsbetiae_contig8121:7055..71721622816896.9295776-CDS-L-elsbetiae_contig8121:7055..7172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8121 7056..7172 -
1691683895.3193178-CDS-L-elsbetiae_contig8121:7055..71721691683895.3193178-CDS-L-elsbetiae_contig8121:7055..7172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8121 7056..7172 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.9408305-UTR-L-elsbetiae_contig8121:7172..71991622816896.9408305-UTR-L-elsbetiae_contig8121:7172..7199Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8121 7173..7199 -
1691683895.330046-UTR-L-elsbetiae_contig8121:7172..71991691683895.330046-UTR-L-elsbetiae_contig8121:7172..7199Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8121 7173..7199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8121.17119.1prot_L-elsbetiae_contig8121.17119.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8121 7056..7172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8121.17119.1

>prot_L-elsbetiae_contig8121.17119.1 ID=prot_L-elsbetiae_contig8121.17119.1|Name=mRNA_L-elsbetiae_contig8121.17119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=39bp
MLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF*
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mRNA from alignment at L-elsbetiae_contig8121:7056..7199-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8121.17119.1 ID=mRNA_L-elsbetiae_contig8121.17119.1|Name=mRNA_L-elsbetiae_contig8121.17119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=144bp|location=Sequence derived from alignment at L-elsbetiae_contig8121:7056..7199- (Laminarionema elsbetiae ELsaHSoW15)
GAGGACGAAGAGGAGGAAATAGAAGAAATGCTACAGGAGGGGCCGGCCGG AAAGGAGTGGGGTGGCCCGACGAGAGGAGGGGTGTTGGGCGAGCCCACCA GATTCGGCGACTGGGAGCGAAAGGGGAGGTGCTCGGATTTCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8121:7056..7199-

>mRNA_L-elsbetiae_contig8121.17119.1 ID=mRNA_L-elsbetiae_contig8121.17119.1|Name=mRNA_L-elsbetiae_contig8121.17119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig8121:7056..7199- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTACAGGAGGGGCCGGCCGGAAAGGAGTGGGGTGGCCCGACGAGAGG
AGGGGTGTTGGGCGAGCCCACCAGATTCGGCGACTGGGAGCGAAAGGGGA
GGTGCTCGGATTTCTAGATGCTACAGGAGGGGCCGGCCGGAAAGGAGTGG
GGTGGCCCGACGAGAGGAGGGGTGTTGGGCGAGCCCACCAGATTCGGCGA
CTGGGAGCGAAAGGGGAGGTGCTCGGATTTCTAG
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