mRNA_L-elsbetiae_contig8120.17118.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8120.17118.1
Unique NamemRNA_L-elsbetiae_contig8120.17118.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8120.17118.1 vs. uniprot
Match: D7FP96_ECTSI (R3H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP96_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 5.780e-49
Identity = 127/223 (56.95%), Postives = 145/223 (65.02%), Query Frame = 1 
Query:   13 SGARRFAGGKWEDAEERFLLVERRLRDIVVRALRSSALLSFVVGLEALLEGFAKDNEAPSEMPETLRSALASRPTVEVEAGKP------AEAGA--TLLVPLGPSPFHRLLLHALCQYRRLRSRSEETSRGRVVRVTVPTPR----------TASAVPDARLTDFVLETRLR---ATVAGSGGDAGTGGPRVSQASPHVAAA--TRCGQENPAGTSTAITGVA 612
            SGAR F GGKWEDAEERFLLVERRLRDIVVRALR+ AL+ F+ GLE LL  F +  +  +EMP  LRSALAS P VEV           AEAGA  TLLVPLGPSPFHRLLLHALCQY++LRS+SEET RGR+VRV +PT            TA A P+A LT+FVL TRL+         G   G G  R+SQASP  A A  +  G+   A T T +  VA
Sbjct:  224 SGARHFTGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFTQTKQILTEMPSALRSALASPPKVEVRKXXXXXXXXXAEAGAGPTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETKRGRIVRVMIPTSXXXXXXXXXSGTAFAAPNAPLTEFVLRTRLQDYDRLREREGAARGEG--RLSQASPSSAGAGCSSRGERARAITPTTVATVA 444
[Close]
BLAST of mRNA_L-elsbetiae_contig8120.17118.1 vs. uniprot
Match: A0A835ZHM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.340e-14
Identity = 53/123 (43.09%), Postives = 73/123 (59.35%), Query Frame = 1 
Query:   13 SGARRFAGGKWEDAEERFLLVERRLRDIVVRALRSSALLSFVVGLEALLEGFAKDNEAPSEMPETLRSALASRPTVEVEAGKPAEAGATLLVPLGPSPFHRLLLHALCQYRRLRSRSEETSRG 381
            SG +++ G  WEDAEERF  + +RLRD+V ++L  + L ++V  +EA L  F      P   P+ L  AL  R  ++++AG   + GA L V L  SPFHRLLLHA CQY  L S+S+    G
Sbjct:  165 SGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEAL--RTPLQLQAGP--KGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGG 283
[Close]
BLAST of mRNA_L-elsbetiae_contig8120.17118.1 vs. uniprot
Match: M4BNN1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BNN1_HYAAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.280e-11
Identity = 53/155 (34.19%), Postives = 83/155 (53.55%), Query Frame = 1 
Query:   16 GARRFAGGKWEDAEERFLLVERRLRDIVVRALRSSALLSFVVGLEALLEGFAKDNEAPSEMPETLRSALASRPTVEVEAGKPAEAGATLLVPLGPSPFHRLLLHALCQYRRLRSRSEETSRGRVVRVTVPTPRTASAVPDAR---LTDFVLETRL 471
            G R     KW DAE+ F  V+RR R +++R+L S A   F+  +E ++  F +  E PSE+   + + L       +E  K  E    L++PL  S FHRL++H++CQ+  +RSR+E   R     + + +P+T S   D     + DF+ ETRL
Sbjct:  125 GPRNRRKDKWNDAEQMFTRVDRRARTLILRSLTSLA--PFIEAVECVVLHFIQWREVPSEL--EIAAPLFHMLKHPIELVKVCEKDVRLVMPLLDSAFHRLIIHSVCQFYGVRSRTEANRRLNTKVMVLKSPKTRSLADDLAQISMCDFIRETRL 275
[Close]
BLAST of mRNA_L-elsbetiae_contig8120.17118.1 vs. uniprot
Match: M4BNN2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BNN2_HYAAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.150e-11
Identity = 53/155 (34.19%), Postives = 83/155 (53.55%), Query Frame = 1 
Query:   16 GARRFAGGKWEDAEERFLLVERRLRDIVVRALRSSALLSFVVGLEALLEGFAKDNEAPSEMPETLRSALASRPTVEVEAGKPAEAGATLLVPLGPSPFHRLLLHALCQYRRLRSRSEETSRGRVVRVTVPTPRTASAVPDAR---LTDFVLETRL 471
            G R     KW DAE+ F  V+RR R +++R+L S A   F+  +E ++  F +  E PSE+   + + L       +E  K  E    L++PL  S FHRL++H++CQ+  +RSR+E   R     + + +P+T S   D     + DF+ ETRL
Sbjct:  211 GPRNRRKDKWNDAEQMFTRVDRRARTLILRSLTSLA--PFIEAVECVVLHFIQWREVPSEL--EIAAPLFHMLKHPIELVKVCEKDVRLVMPLLDSAFHRLIIHSVCQFYGVRSRTEANRRLNTKVMVLKSPKTRSLADDLAQISMCDFIRETRL 361
[Close]
BLAST of mRNA_L-elsbetiae_contig8120.17118.1 vs. uniprot
Match: K3WHK0_GLOUD (R3H domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHK0_GLOUD)

HSP 1 Score: 75.9 bits (185), Expect = 4.850e-11
Identity = 51/146 (34.93%), Postives = 83/146 (56.85%), Query Frame = 1 
Query:   43 WEDAEERFLLVERRLRDIVVRALRSSALLSFVVGLEALLEGFAKDNEAPSEMPETLRSALASRPTVEVEAGKPAEAGATLLVPLGPSPFHRLLLHALCQYRRLRSRSEETSRGRVVRVTVPTPRT---ASAVPDARLTDFVLETRL 471
            W DAEE FL ++RR R ++VR+ +S A  SF+  +E ++  F +  E PSE+   + S L    T  +E  K +E    L++PL  S FHRL++H++CQ+  +RSR+E   R     + + +P++   A  +    L +F+ ETR 
Sbjct:  202 WNDAEEMFLRIDRRARTLLVRSFQSFA--SFIEAVEYVVLHFIQWREVPSEI--EVASGLLRVQTHPMELLKASEKDVRLVIPLVDSAFHRLIIHSVCQFYGVRSRTEANRRFNTKIMVLKSPKSKFSAEELAKNSLCEFIRETRF 343
[Close]
BLAST of mRNA_L-elsbetiae_contig8120.17118.1 vs. uniprot
Match: A0A0P1ADC5_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ADC5_PLAHL)

HSP 1 Score: 68.2 bits (165), Expect = 1.410e-8
Identity = 47/145 (32.41%), Postives = 81/145 (55.86%), Query Frame = 1 
Query:   40 KWEDAEERFLLVERRLRDIVVRALRSSALLSFVVGLEALLEGFAKDNEAPSEMPETLRSALASRPTVEVEAGKPAEAGATLLVPLGPSPFHRLLLHALCQYRRLRSRSEETSRGRVVRVTVPTPRTASAVPDA-RLTDFVLETRL 471
            +W DAE+ F  V+RR R +++R+  S A   F+  +E ++  F +  E PSE+   + + L       +E  + +E    L++PL  S FHRL++H++CQ+  +RSR+E T R     + + +PR    V +   L +F+ ETR+
Sbjct:  188 EWNDAEQMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWREVPSEL--EVAAPLTRMLKHPIELIQASENDVRLILPLLDSAFHRLIVHSVCQFYGVRSRTESTCRLNTKIMILKSPRKFCPVTNVCSLCEFIRETRI 328
[Close]
BLAST of mRNA_L-elsbetiae_contig8120.17118.1 vs. uniprot
Match: D0MX30_PHYIT (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0MX30_PHYIT)

HSP 1 Score: 68.2 bits (165), Expect = 1.430e-8
Identity = 48/147 (32.65%), Postives = 80/147 (54.42%), Query Frame = 1 
Query:   40 KWEDAEERFLLVERRLRDIVVRALRSSALLSFVVGLEALLEGFAKDNEAPSEMPETLRSALASRPTVEVEAGKPAEAGATLLVPLGPSPFHRLLLHALCQYRRLRSRSEETSRGRVVRVTVPTPRTASAVPDAR---LTDFVLETRL 471
            +W DAE+ F  V+RR R +++R+  S AL  F+  +E ++  F +  E PSE+   + + L       +E  K  E    L++PL  S FHRL++H++CQ+  +RSR+E   R     + + +P+      DA    L +F+ ETR+
Sbjct:  189 EWNDAEQMFTRVDRRARTLMLRSFSSFAL--FIEAVEYVVLYFIQWREVPSEL--EIATPLFRMLKHPIELMKANEKDVRLILPLLDSAFHRLIIHSVCQFYGVRSRTEANRRLNTKIMVLKSPKRKFLADDAAQISLCEFIRETRI 331
[Close]
BLAST of mRNA_L-elsbetiae_contig8120.17118.1 vs. uniprot
Match: A0A3M6VM59_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VM59_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.680e-8
Identity = 45/147 (30.61%), Postives = 78/147 (53.06%), Query Frame = 1 
Query:   40 KWEDAEERFLLVERRLRDIVVRALRSSALLSFVVGLEALLEGFAKDNEAPSEMPETLRSALASRPTVEVEAGKPAEAGATLLVPLGPSPFHRLLLHALCQYRRLRSRSEETSRGRVVRVTVPTPRTASAVPDA---RLTDFVLETRL 471
            +W DAE  F  V+RR R +++R+  S A   F+  +E ++  F +  E PSE+          +  +E+   K +E    L++PL  S FHRL++H++CQ+  +RSR+E   R     + + +P+  +   D     L +F+ ETR+
Sbjct:  185 EWNDAELMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWQEVPSELEVAAPLFFVLKHPIELM--KESEKDVRLILPLLDSAFHRLIIHSVCQFYGIRSRTEANCRLNTKIMVLKSPKIKNLADDVVHYSLCEFICETRI 327
[Close]
BLAST of mRNA_L-elsbetiae_contig8120.17118.1 vs. uniprot
Match: A0A2D4C6I2_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6I2_PYTIN)

HSP 1 Score: 65.9 bits (159), Expect = 7.770e-8
Identity = 49/152 (32.24%), Postives = 80/152 (52.63%), Query Frame = 1 
Query:   40 KWEDAEERFLLVERRLRDIVVRALRSSALLSFVVGLEALLEGFAKDNEAPSEMPETLRSALASRPTVEVEAGKPAEAGATLLVPLGPSPFHRLLLHALCQYRRLRSRSEETSRGRVVRVTVPTPRTA---SAVPDARLTDFVLETRL-RATV 483
            +W DAEE F  ++RR R +++++    A  SF+  +E ++  F +  E PSE+  ++   L S     +E     E    L +PL  S FHRL++H++CQ+  +RSR+E   R     + +  P+       +    L DF+ ETRL R+TV
Sbjct:  188 EWNDAEEMFTRIDRRARTLLLQSFTKFA--SFIEAVEYVVLHFIQWKELPSELEVSM--GLNSLLVTPMEVATFGENDVRLCMPLADSAFHRLMIHSVCQFYGVRSRTEANRRFNTKIMVLKGPKRKIDQGELXQISLCDFIRETRLDRSTV 335
[Close]
BLAST of mRNA_L-elsbetiae_contig8120.17118.1 vs. uniprot
Match: H3GQZ4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQZ4_PHYRM)

HSP 1 Score: 65.1 bits (157), Expect = 1.380e-7
Identity = 46/147 (31.29%), Postives = 79/147 (53.74%), Query Frame = 1 
Query:   40 KWEDAEERFLLVERRLRDIVVRALRSSALLSFVVGLEALLEGFAKDNEAPSEMPETLRSALASRPTVEVEAGKPAEAGATLLVPLGPSPFHRLLLHALCQYRRLRSRSEETSRGRVVRVTVPTPRTASAVPDA---RLTDFVLETRL 471
            +W DAE+ F  V+RR R +++R+  S A   F+  +E ++  F +  E PSE+   + + L       +E  +  E    L++PL  S FHRL++H++CQ+  +RSR+E   R     + + +P+   A  D     L +F+ ETR+
Sbjct:  184 EWNDAEQMFTRVDRRARTLMLRSFNSFA--PFIEAVEYVVLHFIQWREVPSEL--EVATPLFRMLKHPIELMRANEKDMRLILPLMDSAFHRLIIHSVCQFYGVRSRTEANRRLSTKIMVLKSPKKKLAAVDLVQISLCEFIRETRI 326
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8120.17118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FP96_ECTSI5.780e-4956.95R3H domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZHM7_9STRA1.340e-1443.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
M4BNN1_HYAAE2.280e-1134.19Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
M4BNN2_HYAAE4.150e-1134.19Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
K3WHK0_GLOUD4.850e-1134.93R3H domain-containing protein n=1 Tax=Globisporang... [more]
A0A0P1ADC5_PLAHL1.410e-832.41Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
D0MX30_PHYIT1.430e-832.65Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]
A0A3M6VM59_9STRA7.680e-830.61Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A2D4C6I2_PYTIN7.770e-832.24Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
H3GQZ4_PHYRM1.380e-731.29Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8120contigL-elsbetiae_contig8120:3966..7820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue9.6e-23
Seed eggNOG ortholog2880.D7FP96
Hectar predicted targeting categoryother localisation
EggNOG OGs28Q1N@1,2QWQC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionSingle-stranded nucleic acid binding R3H
Ec32 orthologEc-08_000270.1
Exons5
Model size1821
Cds size420
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.7645957-UTR-L-elsbetiae_contig8120:3965..40141622816896.7645957-UTR-L-elsbetiae_contig8120:3965..4014Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8120 3966..4014 +
1691683895.1872172-UTR-L-elsbetiae_contig8120:3965..40141691683895.1872172-UTR-L-elsbetiae_contig8120:3965..4014Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8120 3966..4014 +
1622816896.7776518-UTR-L-elsbetiae_contig8120:4516..46411622816896.7776518-UTR-L-elsbetiae_contig8120:4516..4641Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8120 4517..4641 +
1691683895.2004466-UTR-L-elsbetiae_contig8120:4516..46411691683895.2004466-UTR-L-elsbetiae_contig8120:4516..4641Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8120 4517..4641 +
1622816896.7890847-UTR-L-elsbetiae_contig8120:5443..54641622816896.7890847-UTR-L-elsbetiae_contig8120:5443..5464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8120 5444..5464 +
1691683895.2182736-UTR-L-elsbetiae_contig8120:5443..54641691683895.2182736-UTR-L-elsbetiae_contig8120:5443..5464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8120 5444..5464 +
1622816896.8378682-UTR-L-elsbetiae_contig8120:6614..78201622816896.8378682-UTR-L-elsbetiae_contig8120:6614..7820Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8120 6615..7820 +
1691683895.2679834-UTR-L-elsbetiae_contig8120:6614..78201691683895.2679834-UTR-L-elsbetiae_contig8120:6614..7820Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8120 6615..7820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.8040118-CDS-L-elsbetiae_contig8120:5464..56301622816896.8040118-CDS-L-elsbetiae_contig8120:5464..5630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8120 5465..5630 +
1691683895.233292-CDS-L-elsbetiae_contig8120:5464..56301691683895.233292-CDS-L-elsbetiae_contig8120:5464..5630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8120 5465..5630 +
1622816896.8165295-CDS-L-elsbetiae_contig8120:6103..62731622816896.8165295-CDS-L-elsbetiae_contig8120:6103..6273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8120 6104..6273 +
1691683895.2427936-CDS-L-elsbetiae_contig8120:6103..62731691683895.2427936-CDS-L-elsbetiae_contig8120:6103..6273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8120 6104..6273 +
1622816896.8266294-CDS-L-elsbetiae_contig8120:6530..66141622816896.8266294-CDS-L-elsbetiae_contig8120:6530..6614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8120 6531..6614 +
1691683895.2521727-CDS-L-elsbetiae_contig8120:6530..66141691683895.2521727-CDS-L-elsbetiae_contig8120:6530..6614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8120 6531..6614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8120.17118.1prot_L-elsbetiae_contig8120.17118.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8120 5465..6614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8120.17118.1

>prot_L-elsbetiae_contig8120.17118.1 ID=prot_L-elsbetiae_contig8120.17118.1|Name=mRNA_L-elsbetiae_contig8120.17118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MPETLRSALASRPTVEVEAGKPAEAGATLLVPLGPSPFHRLLLHALCQYR
RLRSRSEETSRGRVVRVTVPTPRTASAVPDARLTDFVLETRLRATVAGSG
GDAGTGGPRVSQASPHVAAATRCGQENPAGTSTAITGVA*
back to top

mRNA from alignment at L-elsbetiae_contig8120:3966..7820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8120.17118.1 ID=mRNA_L-elsbetiae_contig8120.17118.1|Name=mRNA_L-elsbetiae_contig8120.17118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3855bp|location=Sequence derived from alignment at L-elsbetiae_contig8120:3966..7820+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCCTTCGAGGTCGGGCGCGAGGCGCTTTGCGGGCGGGAAATGGGAAGG
TCAGCCTCACTGCTGCAACCCACGCCGCCCTCGTCTTGAGGACGGTACAG
CATGAGGGGCCCCGTACCTGCCCTCTTGTAAATGTATCGTTATACAGCCG
CGCCGTTTTGAGCTCGTTTTACTTTTACCCACATCTCTCTGTTTCGCGCA
CGCGTGCGCTCGCTCACTCGCTCCTCGCTGCTTTGCGTACTGGGCAATGC
GACAGCCTGCGTACCCCGAGGTCATGCAGAGTACAGCAGTGCAAGAAGCG
TATTGTGGCGTCATGCCCAATCAAGATCAAGGCAACAGCCAAGAGAGAAA
AAATAAAGGTAGAAAAAATAAAGATAGAAAAAACAACTAGAGAACAACAA
AAAATCCCTCGCTAGCGCTCGCTCTCTCCGCTCCAGCCAGCCTTCCGGCG
CTCTTTCAACTGTCGTGGTTGTGTTGCATCCTGACCGTTTTTGTCGTGCT
GTATGTACCCTCGGTCGTTGCTCGGTCTGTTTTTGTGGGCCTTTTTTCCA
GACGCAGAAGAGAGGTTTCTGCTGGTGGAGCGTCGACTCAGGGATATCGT
GGTGCGTGCCCTGCGAAGCTCGGCTCTCCTGAGCTTTGTTGTGGGGCTGG
AAGCGCTGCTGGAAGGGTTCGCTAAGGTAAAACGAACACCGAACGCTATC
ACGGAGGTGTCGCCAAGTATCGAATCTTCCGGCGTTGTTGCGCAAGGAGT
TTCTAATCCCTGCCACCTGCGAGTCTGCCGCGGTAGGAAAAGCTCGCCAG
CCGCCCGGGTTGGTTTGCTTGAGAATGGTGGTGGTGTGGTTGTCGTGTGT
GGGTGGCTCAAGGCCTTCAAGGAACGATGGCGTCATACATACATCGAGTG
TCTCCTCGGAATATGCATCGTTCTTTGAAAGCGTGCTCCGTTGAAGTCAA
GTCAGCAAGGCTTGGCTGCAGAGAGATGTCACCAAATAGCATGCTTCACA
GGGAAAGCGAGCACGCGCCTATACCTGTTCACCCTTGAGACGGTTCGACG
TCAAGTTTGAGTGGACCACTTGATATACTGTTTGTGCGAAGAGGCACATG
CTCCACCCACGGCGCACCGCAAAACCTACAATCCAACATTGCGTCCTTTG
GCCTTCGAGAAGGATCCGCCTATTTCATGTGGATCGTCGACGTCAAGTTT
GAGTGGACCATTTGATGTACTGTTTGTGCGAAGAGGTACATGCTCCACCC
TCCACCCACGGCGCACCGCAAAACCTACAATCCAACATCGCGTCCTTTGG
CCTTCGAGAAGGATCCGCCTCTTTCATGCAGATCCTCGGTGTTCCATGGA
TATTTATACGACAACCCTCGGCAGTTGTTAGTCCGCTTACGATCGTGCGG
ACATGGAAGTACGCACCCCCTCGCCGCCCGGCTGTGCCCCCTCACTTTAC
GCACGCACGGCTTGCTCGCTTCTCGCAGGACAATGAGGCACCGTCTGAAA
TGCCCGAGACGCTGCGCTCTGCGCTTGCCTCTCGGCCCACGGTTGAGGTG
GAGGCGGGCAAACCTGCCGAGGCAGGGGCCACGCTACTGGTACCCCTCGG
GCCTTCGCCATTCCACCGCCTCCTGCTCCACGCGCTGTGCCAGTACCGCA
GGCTGCGCTCGAGGAGTGAGTGGGATTCCGTCCTCGTGGAATTCCATCCT
CGTGGGCCCGCACCCCTCTGATGTTGCTGCCCCTATTGGTTCTTGTGTGT
TTGATGTACGAGAAGTTTCAACTTTCGGTTGATTTTGTGAAAAAGGGGCG
AGACGTAAAACGTCTTTTGACAGACGACGTTAGGTTGGCTGATCAAGGGC
GACCTGTCTCTCCCGGTTGTTTTCTGCGTTGCTGATTTTGTGAGAAGGGG
TGAGAGGTAAAACGTCTTCGACGGACGACGTTGGGTTGGCTGATCAAGGG
CGACTCGTCTCTCTTGGTTGTTTTTGGCGTTGCTCCGGTTTTTCTCCCCT
CTCCCCCTGCCCTCGACCCCATCTGAGTTTTCCCAAAAGTTTCTCCGAGG
AGGGACTAATCTGTTTTTGCCCTGCGCGCTCCTGTTGCTTCCTCTCCGCC
GTTTCCTCTGTCTGGTCTCACCTCAACACCAACGCCAGGCGAGGAGACAA
GCCGTGGGCGCGTTGTGCGCGTCACCGTCCCAACGCCCCGCACGGCCTCA
GCTGTGCCCGACGCGCGTCTCACGGACTTCGTGCTTGAGACCAGGCTTAG
GGCTACCGTTGCGGGCAGCGGTGGAGACGCGGGGACTGGAGGGCCTAGAG
TCTCCCAGGTGCGTGTGTGTGGGGGGGGGGGGGGGGGGGCGTGCTCTGAT
GTTTCAGCGGGAAAGAGCCGTCTTCCCCGGGATGAATGGCGCGGGCGTTC
GAGGACCCGAGGTCAGGAGGCGTTTTTTCACCATTGTTTCGGCTTCTTGG
ACTTGTGGTGCATTGACGTGAGAGCTGCGAACAGATTGTTTTAAACTCAA
ATTTGCTCTCTGTCGTCGCTTCGCGTTTCTCAAACGATGGCCCGCGTGCT
GCCCTTATTGACCAGGCGTCACCGCATGTAGCAGCAGCAACACGGTGCGG
CCAGGAGAACCCTGCGGGGACATCGACTGCGATCACCGGCGTTGCTTGAT
TCGATTAGACGGGGAGCGCGAGGTTACGGTACCCCGGGAATAAGACCGCT
GTGAGCGAACTCTAAACGCTGGCGCGGCAAACGTGCTGCAAAGGATGGCT
CCGCCGACACCACGCGTTAGGATTAGGTGGGGTCAAGGCTATGAGGGCAA
TTATAGGGTTGTAAGGCGTGTGGTGCCGAATGCACGCCTTGGGGATGTGT
TTTTGTCGATATTTCGAAGACAATCGTGCAAGGCAGCAATGCTAGTTGGA
CAATATTTTATCGAGAGCAGCTCGAGATGCTGATTAGGTCAAATATTTAC
CCAAAAAGCATGCTTTGGGCTGTTGTTGTCTTGTTGTACGAGGGTCTACT
TTTTGTGTGTATATTCAATTTTGCTGTACAAAGCCCAGGACTTTATAACT
TAGTGCCTTGACAGGAATGACTTGCATTTCTATTATCGGTCTTGCGCTGT
CAATGGGCAGATAAGTCGGATGGAAGAGAGGAACCGATTCCACCTGATTC
CACCTTTGCTGTACAAAGCTATCAAGGTAGGTATAAGATAACGATAACGA
GAGTTGCGTAACAACAGGTGAGTGAGCTACATCTGAGGGAAGATGTTGGT
AGATATGTAAGTTGCGTGGTTAGTTAGAGGCCGGTCGTCGGCTGTTCCAG
AGCGACGCTTCTGTGGCCGTAGCGTAACAGCTTCAGAGGACCGGTGTTGC
TCCCATCATCGGAAGTTGGACGACATCGCGTCGGGAGATACATGTGGGTT
GCTCTAGTTCCGGTCTGTGCGTGATGCACACAGATACATACATCGAAGTA
TGCGCCACAAGAGATTTTGGCGGAGTCTTGGGCACATCTTATGAATTGTC
TTCGGATCATGGTCCATGTCCTCAGACTGTCTCACACTTGTAGGACCACG
CGGAAGTAGTAGCAGGGTAACGGGGTTAGGTAGATCATTAGAAGCTTGTG
GGATCCTCGCGAGAAATTTAAGGATCGGTTTTACCATTTTGCTACCTACG
TGTTCGGAACGGAAGCAGTTGAGTGTGTATTCGTTCATGAGCGATTTTTG
TGCTTTCCGAGGTGTGAGGAAGACGGATCAACCCATCCATCACAGCTGGG
GTTTGCCAACGGAAAGTTGAAGGGTGGGTGGCGCATGTATTGAGGGTCTG
TGGGTTCAATTCAGAGAATATTTTGCTCTCTGGAAAACATCCCCAGAGGG
AGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8120:3966..7820+

>mRNA_L-elsbetiae_contig8120.17118.1 ID=mRNA_L-elsbetiae_contig8120.17118.1|Name=mRNA_L-elsbetiae_contig8120.17118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig8120:3966..7820+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCGAGACGCTGCGCTCTGCGCTTGCCTCTCGGCCCACGGTTGAGGT
GGAGGCGGGCAAACCTGCCGAGGCAGGGGCCACGCTACTGGTACCCCTCG
GGCCTTCGCCATTCCACCGCCTCCTGCTCCACGCGCTGTGCCAGTACCGC
AGGCTGCGCTCGAGGAATGCCCGAGACGCTGCGCTCTGCGCTTGCCTCTC
GGCCCACGGTTGAGGTGGAGGCGGGCAAACCTGCCGAGGCAGGGGCCACG
CTACTGGTACCCCTCGGGCCTTCGCCATTCCACCGCCTCCTGCTCCACGC
GCTGTGCCAGTACCGCAGGCTGCGCTCGAGGAGCGAGGAGACAAGCCGTG
GGCGCGTTGTGCGCGTCACCGTCCCAACGCCCCGCACGGCCTCAGCTGTG
CCCGACGCGCGTCTCACGGACTTCGTGCTTGAGACCAGGCTTAGGGCTAC
CGTTGCGGGCAGCGGTGGAGACGCGGGGACTGGAGGGCCTAGAGTCTCCC
AGGCGAGGAGACAAGCCGTGGGCGCGTTGTGCGCGTCACCGTCCCAACGC
CCCGCACGGCCTCAGCTGTGCCCGACGCGCGTCTCACGGACTTCGTGCTT
GAGACCAGGCTTAGGGCTACCGTTGCGGGCAGCGGTGGAGACGCGGGGAC
TGGAGGGCCTAGAGTCTCCCAGGCGTCACCGCATGTAGCAGCAGCAACAC
GGTGCGGCCAGGAGAACCCTGCGGGGACATCGACTGCGATCACCGGCGTT
GCTTGAGCGTCACCGCATGTAGCAGCAGCAACACGGTGCGGCCAGGAGAA
CCCTGCGGGGACATCGACTGCGATCACCGGCGTTGCTTGA
back to top