mRNA_L-elsbetiae_contig812.17117.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig812.17117.1
Unique NamemRNA_L-elsbetiae_contig812.17117.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig812.17117.1 vs. uniprot
Match: D8LBM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM1_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 7.910e-107
Identity = 183/323 (56.66%), Postives = 222/323 (68.73%), Query Frame = 1 
Query:  247 AIAVVGLTA-LPAKGRGVLVNCLGFWLPAVATIGDTEKGVDLPHNPSVYTGYWVIFGLFTLLDVILPAVTPCYFFTKACVLTWAASSARPYGGRAVIDRAFKIINNRDEHERTPLKEVIMATRALGPSEDIAAQAGVSRRAFRLAIVVAAVAFRILALGIVSSLMLAMEGLFAGLPTWIQARVCVIAGACWPLYATLLARARS--AAAAEGLGDDKDGRNRRLGPAAVQWLSYWPMYALFLAVVDPIIGCVPHFYSFKLVVLAFLALPQTRGAYLITSLVLYAEDVDT-GSTGSLVDKCRSAQSSPPEKWEEQKTSCSTPVVV 1203
            A A +GL A LP KGRGVLVN  GF LPA++ IG+ +   D   N  ++TGYWV+FGLF LLD +LPA+TPCYF TKACVL WA SSARPYGGR V++RAF I ++ D   +       M  +AL P E++A + G+SR+AFRLA ++  V    + LGI    +L +EGL+AGL T  QARVCV+AGACWPLYATL+ RARS  AA A+G G  +    +R GPAAVQWLSYWPM+ALFLA++DP +G +PHFYSFK+V LAFLALPQTRGAY+ITSLVLY  D  T GS G      R  Q        E K SC  P VV
Sbjct:    5 AFAALGLVAALPTKGRGVLVNFGGFLLPALSNIGEIDTKAD---NKPLFTGYWVVFGLFFLLDGVLPAITPCYFSTKACVLIWAFSSARPYGGRPVLNRAFDINDSNDSDHKDA-----MVIKALRPWEEVATEKGISRKAFRLAAIIFTVTAGTVVLGICYFFVLTVEGLYAGLSTSTQARVCVLAGACWPLYATLVGRARSEAAAVAKGSGGTEGAEKKRQGPAAVQWLSYWPMFALFLAILDPAMGWLPHFYSFKMVALAFLALPQTRGAYVITSLVLYGNDRGTVGSGGGDEASFRGGQG-------EHKVSCGAPAVV 312
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig812.17117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBM1_ECTSI7.910e-10756.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig812contigL-elsbetiae_contig812:24909..26764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionTB2/DP1/HVA22-related protein
Ec32 orthologEc-27_003450.1
Exons2
Model size1213
Cds size1212
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.7229226-CDS-L-elsbetiae_contig812:24908..257181622816896.7229226-CDS-L-elsbetiae_contig812:24908..25718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 24909..25718 -
1691683895.1583452-CDS-L-elsbetiae_contig812:24908..257181691683895.1583452-CDS-L-elsbetiae_contig812:24908..25718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 24909..25718 -
1622816896.7332728-CDS-L-elsbetiae_contig812:26362..267641622816896.7332728-CDS-L-elsbetiae_contig812:26362..26764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 26363..26764 -
1691683895.171116-CDS-L-elsbetiae_contig812:26362..267641691683895.171116-CDS-L-elsbetiae_contig812:26362..26764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 26363..26764 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig812.17117.1prot_L-elsbetiae_contig812.17117.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig812 24909..26764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig812.17117.1

>prot_L-elsbetiae_contig812.17117.1 ID=prot_L-elsbetiae_contig812.17117.1|Name=mRNA_L-elsbetiae_contig812.17117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=404bp
ELHSGVSLRVKSMTLDSPTHRSPPLPTPPPPPTRGRGTIPEEDEIWNAER
IHRMATETLLWCTEQYKRSRSNHVRVWYAMAGAIAVVGLTALPAKGRGVL
VNCLGFWLPAVATIGDTEKGVDLPHNPSVYTGYWVIFGLFTLLDVILPAV
TPCYFFTKACVLTWAASSARPYGGRAVIDRAFKIINNRDEHERTPLKEVI
MATRALGPSEDIAAQAGVSRRAFRLAIVVAAVAFRILALGIVSSLMLAME
GLFAGLPTWIQARVCVIAGACWPLYATLLARARSAAAAEGLGDDKDGRNR
RLGPAAVQWLSYWPMYALFLAVVDPIIGCVPHFYSFKLVVLAFLALPQTR
GAYLITSLVLYAEDVDTGSTGSLVDKCRSAQSSPPEKWEEQKTSCSTPVV
VPM*
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mRNA from alignment at L-elsbetiae_contig812:24909..26764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig812.17117.1 ID=mRNA_L-elsbetiae_contig812.17117.1|Name=mRNA_L-elsbetiae_contig812.17117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1856bp|location=Sequence derived from alignment at L-elsbetiae_contig812:24909..26764- (Laminarionema elsbetiae ELsaHSoW15)
GAACTACATAGCGGTGTGTCCTTGCGCGTCAAGTCGATGACTCTTGACTC
CCCTACTCACCGATCTCCCCCTCTTCCCACCCCACCCCCTCCTCCCACAC
GCGGCCGCGGCACAATTCCTGAAGAGGACGAGATATGGAACGCCGAGCGA
ATCCACAGGATGGCAACGGAGACGTTGTTGTGGTGTACTGAACAGTACAA
GAGAAGCCGGAGTAATCATGTGAGGGTCTGGTATGCCATGGCCGGAGCTA
TCGCGGTAGTAGGGCTGACAGCTCTCCCGGCGAAGGGCAGGGGTGTTTTG
GTAAACTGTTTGGGGTTTTGGCTACCCGCTGTGGCGACCATCGGGGATAC
GGAGAAGGGCGTGGATCTTCCACACAACCCTTCGGTCTACACTGGATACT
GGGTGAGAGAAGATGATACAAAATTCTAGCAGAAGTGCACCGATAGAGGG
AGGAGATCATAGCGTTGATGATATGAAGTACACATATAGTCTAGTCTTGT
AGGCAGATACGTACATACACTATCTAGACTACTTCATATATTTACATACT
TCGAGTACTAGATAGACTACTGGACGGATAACGCACGGCTAACCTCGTCG
GTTGCTACAATACAGATACGGAGTACAGCATTAGTCTATGTTCTTATTTC
GTACTGCACATGACGATAGATAAAGATACACAGTCGAGACTCGATATCCT
TTATTGTACTTTACCCCCATCAATTGAAGCCGCCGGGATCCAACGCGTAG
CAGCCGACCATGTATTGAAAACGTATTCCTCCCTCGGGTTCAGTTCTGTA
ACTCTCGCCACATTTTCGTCCTTTCCTCCCCTGCGGAACAGCATATTATC
AAGAAAATTAGCCGGGTTTGACCGGGTGACAAATTTGTATGCATCATATT
CTTCACGTAGAGGTGAATGCCACATGCGTCAAAGGCAAGCAGCAGGTAAT
TGTAAATATGGGGGGTCAAAACTGCTGTCGTGGTATCAACTCCTCAGCAC
ATCCTGCTTCTTCTGTTGTTGTGCGTTTTTCCTCGTTACATATAAGGTTA
TCTTCGGGCTTTTCACCTTGCTCGACGTGATACTGCCGGCCGTCACTCCT
TGCTACTTCTTCACTAAGGCGTGCGTTCTCACTTGGGCTGCCTCCTCCGC
TCGTCCGTACGGCGGCCGGGCGGTGATAGATCGTGCGTTTAAAATAATCA
ACAACCGCGACGAACACGAACGCACGCCCTTGAAAGAAGTAATTATGGCG
ACAAGAGCGTTGGGACCCTCAGAAGATATAGCAGCCCAAGCCGGCGTTTC
GCGGAGAGCTTTCCGTCTCGCTATAGTCGTCGCTGCTGTCGCTTTTCGAA
TCCTCGCTCTGGGAATCGTCTCCTCCCTCATGCTTGCCATGGAAGGACTT
TTCGCGGGCCTGCCGACTTGGATCCAGGCAAGGGTTTGCGTTATCGCGGG
AGCTTGCTGGCCCCTGTACGCGACTTTGCTTGCTCGAGCCCGGAGCGCGG
CCGCAGCTGAAGGATTGGGCGATGACAAAGACGGCAGGAACCGGAGGCTT
GGGCCTGCGGCCGTGCAATGGCTCAGTTACTGGCCCATGTACGCGCTCTT
TCTGGCGGTCGTCGATCCCATCATAGGATGTGTTCCGCACTTTTACTCTT
TCAAGCTCGTGGTGCTTGCGTTCCTCGCACTGCCTCAGACAAGAGGCGCT
TATCTGATCACGTCGCTCGTTCTCTACGCCGAAGATGTGGATACTGGTTC
CACTGGAAGCCTCGTCGACAAGTGCCGTAGTGCTCAGAGCTCGCCTCCTG
AAAAATGGGAGGAGCAGAAAACCAGCTGCAGTACTCCTGTTGTGGTGCCT
ATGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig812:24909..26764-

>mRNA_L-elsbetiae_contig812.17117.1 ID=mRNA_L-elsbetiae_contig812.17117.1|Name=mRNA_L-elsbetiae_contig812.17117.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2424bp|location=Sequence derived from alignment at L-elsbetiae_contig812:24909..26764- (Laminarionema elsbetiae ELsaHSoW15)
GAACTACATAGCGGTGTGTCCTTGCGCGTCAAGTCGATGACTCTTGACTC
CCCTACTCACCGATCTCCCCCTCTTCCCACCCCACCCCCTCCTCCCACAC
GCGGCCGCGGCACAATTCCTGAAGAGGACGAGATATGGAACGCCGAGCGA
ATCCACAGGATGGCAACGGAGACGTTGTTGTGGTGTACTGAACAGTACAA
GAGAAGCCGGAGTAATCATGTGAGGGTCTGGTATGCCATGGCCGGAGCTA
TCGCGGTAGTAGGGCTGACAGCTCTCCCGGCGAAGGGCAGGGGTGTTTTG
GTAAACTGTTTGGGGTTTTGGCTACCCGCTGTGGCGACCATCGGGGATAC
GGAGAAGGGCGTGGATCTTCCACACAACCCTTCGGTCTACACTGGATACT
GGGAACTACATAGCGGTGTGTCCTTGCGCGTCAAGTCGATGACTCTTGAC
TCCCCTACTCACCGATCTCCCCCTCTTCCCACCCCACCCCCTCCTCCCAC
ACGCGGCCGCGGCACAATTCCTGAAGAGGACGAGATATGGAACGCCGAGC
GAATCCACAGGATGGCAACGGAGACGTTGTTGTGGTGTACTGAACAGTAC
AAGAGAAGCCGGAGTAATCATGTGAGGGTCTGGTATGCCATGGCCGGAGC
TATCGCGGTAGTAGGGCTGACAGCTCTCCCGGCGAAGGGCAGGGGTGTTT
TGGTAAACTGTTTGGGGTTTTGGCTACCCGCTGTGGCGACCATCGGGGAT
ACGGAGAAGGGCGTGGATCTTCCACACAACCCTTCGGTCTACACTGGATA
CTGGGTTATCTTCGGGCTTTTCACCTTGCTCGACGTGATACTGCCGGCCG
TCACTCCTTGCTACTTCTTCACTAAGGCGTGCGTTCTCACTTGGGCTGCC
TCCTCCGCTCGTCCGTACGGCGGCCGGGCGGTGATAGATCGTGCGTTTAA
AATAATCAACAACCGCGACGAACACGAACGCACGCCCTTGAAAGAAGTAA
TTATGGCGACAAGAGCGTTGGGACCCTCAGAAGATATAGCAGCCCAAGCC
GGCGTTTCGCGGAGAGCTTTCCGTCTCGCTATAGTCGTCGCTGCTGTCGC
TTTTCGAATCCTCGCTCTGGGAATCGTCTCCTCCCTCATGCTTGCCATGG
AAGGACTTTTCGCGGGCCTGCCGACTTGGATCCAGGCAAGGGTTTGCGTT
ATCGCGGGAGCTTGCTGGCCCCTGTACGCGACTTTGCTTGCTCGAGCCCG
GAGCGCGGCCGCAGCTGAAGGATTGGGCGATGACAAAGACGGCAGGAACC
GGAGGCTTGGGCCTGCGGCCGTGCAATGGCTCAGTTACTGGCCCATGTAC
GCGCTCTTTCTGGCGGTCGTCGATCCCATCATAGGATGTGTTCCGCACTT
TTACTCTTTCAAGCTCGTGGTGCTTGCGTTCCTCGCACTGCCTCAGACAA
GAGGCGCTTATCTGATCACGTCGCTCGTTCTCTACGCCGAAGATGTGGAT
ACTGGTTCCACTGGAAGCCTCGTCGACAAGTGCCGTAGTGCTCAGAGCTC
GCCTCCTGAAAAATGGGAGGAGCAGAAAACCAGCTGCAGTACTCCTGTTG
TGGTGCCTATGTGAGTTATCTTCGGGCTTTTCACCTTGCTCGACGTGATA
CTGCCGGCCGTCACTCCTTGCTACTTCTTCACTAAGGCGTGCGTTCTCAC
TTGGGCTGCCTCCTCCGCTCGTCCGTACGGCGGCCGGGCGGTGATAGATC
GTGCGTTTAAAATAATCAACAACCGCGACGAACACGAACGCACGCCCTTG
AAAGAAGTAATTATGGCGACAAGAGCGTTGGGACCCTCAGAAGATATAGC
AGCCCAAGCCGGCGTTTCGCGGAGAGCTTTCCGTCTCGCTATAGTCGTCG
CTGCTGTCGCTTTTCGAATCCTCGCTCTGGGAATCGTCTCCTCCCTCATG
CTTGCCATGGAAGGACTTTTCGCGGGCCTGCCGACTTGGATCCAGGCAAG
GGTTTGCGTTATCGCGGGAGCTTGCTGGCCCCTGTACGCGACTTTGCTTG
CTCGAGCCCGGAGCGCGGCCGCAGCTGAAGGATTGGGCGATGACAAAGAC
GGCAGGAACCGGAGGCTTGGGCCTGCGGCCGTGCAATGGCTCAGTTACTG
GCCCATGTACGCGCTCTTTCTGGCGGTCGTCGATCCCATCATAGGATGTG
TTCCGCACTTTTACTCTTTCAAGCTCGTGGTGCTTGCGTTCCTCGCACTG
CCTCAGACAAGAGGCGCTTATCTGATCACGTCGCTCGTTCTCTACGCCGA
AGATGTGGATACTGGTTCCACTGGAAGCCTCGTCGACAAGTGCCGTAGTG
CTCAGAGCTCGCCTCCTGAAAAATGGGAGGAGCAGAAAACCAGCTGCAGT
ACTCCTGTTGTGGTGCCTATGTGA
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