mRNA_L-elsbetiae_contig812.17115.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig812.17115.1
Unique NamemRNA_L-elsbetiae_contig812.17115.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig812.17115.1 vs. uniprot
Match: A0A6H5JA62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA62_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.380e-22
Identity = 51/91 (56.04%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:  145 PGVFNYPGSAWGGSFCSIHKE--------------DDMVDSTPKSCESVGCKYAANFGDTTQRTRRFCARHKLGGMLSYQELWPRPEDKTT 375
            PG FNYPG   GGSFC  HKE              + MVD+TP  CE+ GC Y+A+FGD  QRTRRFCARHKL GMLSYQELW    D ++
Sbjct:  278 PGAFNYPGVTRGGSFCDDHKEVYTLYFLVCSSVWQEGMVDNTPTQCEAEGCNYSASFGDMGQRTRRFCARHKLAGMLSYQELWATQTDASS 368
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BLAST of mRNA_L-elsbetiae_contig812.17115.1 vs. uniprot
Match: D8LBM0_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM0_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.620e-11
Identity = 37/76 (48.68%), Postives = 41/76 (53.95%), Query Frame = 1 
Query:  148 GVFNYPGSAWGGSFCSIHKEDDMVDSTPKSCESVGCKYAANFGDTTQRTRRFCARHKLGGMLSYQELWPRPEDKTT 375
            G FNYPG   GGSF                       Y+A+FGD  QRTRRFCARHKL GMLSYQELW    D ++
Sbjct:  208 GAFNYPGVTRGGSFXXXXXXXXXXXXXXXXXXXXXXSYSASFGDMGQRTRRFCARHKLAGMLSYQELWATQTDASS 283
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig812.17115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JA62_9PHAE1.380e-2256.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBM0_ECTSI1.620e-1148.68EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig812contigL-elsbetiae_contig812:21080..23420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size912
Cds size909
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig812.17115.1prot_L-elsbetiae_contig812.17115.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig812 21080..23418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.313215-CDS-L-elsbetiae_contig812:21079..212861622816896.313215-CDS-L-elsbetiae_contig812:21079..21286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 21080..21286 +
1691683894.90059-CDS-L-elsbetiae_contig812:21079..212861691683894.90059-CDS-L-elsbetiae_contig812:21079..21286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 21080..21286 +
1622816896.3274062-CDS-L-elsbetiae_contig812:22280..224211622816896.3274062-CDS-L-elsbetiae_contig812:22280..22421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 22281..22421 +
1691683894.9114337-CDS-L-elsbetiae_contig812:22280..224211691683894.9114337-CDS-L-elsbetiae_contig812:22280..22421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 22281..22421 +
1622816896.3384018-CDS-L-elsbetiae_contig812:22857..234181622816896.3384018-CDS-L-elsbetiae_contig812:22857..23418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 22858..23418 +
1691683894.923238-CDS-L-elsbetiae_contig812:22857..234181691683894.923238-CDS-L-elsbetiae_contig812:22857..23418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 22858..23418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig812.17115.1

>prot_L-elsbetiae_contig812.17115.1 ID=prot_L-elsbetiae_contig812.17115.1|Name=mRNA_L-elsbetiae_contig812.17115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=303bp
TKTCKHPGCDKIPSYGYPCKSREFCKPHAPEGMIYSAGSRCRFRGCGLPG
VFNYPGSAWGGSFCSIHKEDDMVDSTPKSCESVGCKYAANFGDTTQRTRR
FCARHKLGGMLSYQELWPRPEDKTTNVTPLPTNAEKAFAADLAAAAAPVS
MTFGSGQPRKITSSNAAEPAKRPRTHDIPSPGGQLATAPGPSTSQRPEGR
GLVGAEQLNLPANASTPASDGMLPPPPRLVASVPGTGGPAAPASSGMHLD
FLADAAASATLGGHPAEDLHQTPAAVDGLPGSQASAIQAPVGSSSQGVSG
AAT
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mRNA from alignment at L-elsbetiae_contig812:21080..23420+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig812.17115.1 ID=mRNA_L-elsbetiae_contig812.17115.1|Name=mRNA_L-elsbetiae_contig812.17115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2341bp|location=Sequence derived from alignment at L-elsbetiae_contig812:21080..23420+ (Laminarionema elsbetiae ELsaHSoW15)
ACGAAGACGTGCAAGCACCCAGGCTGCGACAAGATCCCGAGCTACGGCTA
CCCGTGTAAATCGCGCGAGTTCTGCAAGCCTCATGCCCCGGAGGGGATGA
TCTACAGCGCGGGGAGCCGGTGCCGCTTCCGAGGGTGTGGGCTACCCGGA
GTGTTCAACTACCCCGGGAGCGCCTGGGGGGGGTCGTTCTGCAGCATCCA
CAAAGAGGTGTGTGGCGAGAAGGCGGAAGTTTGCGCGGACGAATCGAGTT
GAGCTGTCGTTGGTCTGAAGCCTTTAAGTGTGCACTCGACCAGTAGGTTT
GCTTCCCCTTTCAGCTCCCCCCCGTGTCTGCCGGAAACCGTAGAATACGC
CTTCCGGCTTTTAAAATGAAACAAAGAATCAAAGATGGAACCTAACCCAT
ACTAGAGCAAAGACTCGATATGGGGTTCAAACGGTATTCCATACAGAGAC
GTAATATTTGGCGAAGCGAGCAGAAAAAACAACCTAAATATCAGAAGAAT
TCAACATCTCCCCTGCAAAGATTTAGATTTGCGAGGTCGGCCAAAAATTT
CCAGCGGGTAGAGCCCACCGTGATGCCGGCTTTTATTCTGTAGTCGCGGG
CAGCTCCCTCCGATCATAGCGGGTAGTTTACGTCCTCTACGGCCTTTGGT
ATAGCAGCAGCTGTCTGTGAGCGTGCCGCCTTGGTTTCTCCAATCCGAAT
ACTTTCGTGCTGCAGCAACAAAACTGCTTACCCCCAGAATGTGCTCTGTA
ATCCGCGGCGGAGCACCGGTAAAGTTGGTGTTGCAGCTCTTGCACTTCCA
GCGCGGGTTCGGGCCGGCTCGCAAGACCTCGACGGCGTTCCACCCAAGGA
GCACTCCTGAATGAACTATTTCGACGGGACAGTGGGTGCTGCAGCAGGCG
GATGGGCCACAGCAGCGAAGCAGGGAATACATAGCTCTTGTAGGGTGTGG
GCGGTTTGCAGTTGTGGCGTCTCTGGGCGTGTCGACATCGTGAGTGGGTG
TGCGGCCCCCAAATGCAACAGTGTACGTGTGAACAGCGTACACGGTGTGA
GCTTTGGCAGACACACGGTTTTGGCCGGTAACACACACAAGCTTGGTGGT
GTCCCATGAAGATGGACAGGAAAGCCAGCTCGTTACCGCAGCAAGGCGCT
CCATCCGACCATTGTGCTCGGCTCTCTCCCCATCGCTTTTGCCTCCCTCA
GGACGACATGGTGGACAGTACGCCGAAGTCGTGTGAGTCTGTCGGGTGCA
AGTACGCGGCGAACTTCGGGGACACCACGCAGCGGACGAGAAGATTTTGC
GCTAGGCACAAGCTCGGAGGAATGTTGAGCTACCAAGAACTGGTGGGTGA
ATGTGGTGTACGAAGGCGTTAAATGATGAACAATGATTTGTTTTTCGTCA
ACTGTGCTTCTGACTGACAGTCAAGGGGAGCAGAAGTGGTAAAAGGGTTA
TGGCATGTTTTGCATGGCATGCTTTGCATGGCATGACCCTCAACAAACCA
TGCGGTTTGACGTGAACGTGGCGAACAGCGGTAGGCAACGCCGTGCGTTG
TCAGGGCGAACAAACTCTCGCTTCTGTTCGCAGTAATGTCTACGCCATGA
GCAATTTGTCGTCAGCAAGATGAGAGTTTGAATAGCTTTTGTTTCTTGCT
CTTTTTGATGCGCAGGTTTCGCGGTGTAGACAACCCAGCTTGCCGATACG
ACATCTCAACTTGATGATACTCTCCAAATTCCAAATTCCCGTTCTGGTCG
CGTTTTCTACGGCGTTTTTGTTGTCTAGTGGCCGAGACCCGAAGACAAGA
CGACAAATGTGACGCCCCTCCCCACCAACGCCGAAAAGGCCTTCGCGGCA
GACCTTGCGGCGGCAGCAGCACCGGTATCGATGACTTTCGGTTCGGGCCA
ACCACGGAAGATCACGAGCAGCAACGCTGCTGAACCTGCAAAGAGACCGC
GAACGCATGACATACCGTCACCGGGCGGTCAGCTGGCGACCGCGCCTGGT
CCTTCTACCTCCCAGCGCCCGGAGGGCCGCGGGCTCGTGGGTGCGGAGCA
GCTGAACTTGCCTGCCAATGCGAGCACTCCTGCGTCCGATGGGATGCTGC
CGCCGCCGCCTCGGCTTGTCGCCTCGGTACCTGGGACCGGGGGACCGGCC
GCCCCTGCAAGTTCAGGAATGCATCTCGACTTTCTGGCCGACGCCGCCGC
TTCCGCAACGCTCGGTGGGCACCCAGCAGAAGACTTGCACCAGACGCCTG
CTGCTGTAGATGGTCTCCCCGGATCGCAGGCTTCCGCCATTCAAGCCCCG
GTGGGAAGCTCTTCGCAAGGCGTTAGTGGTGCTGCCACGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig812:21080..23420+

>mRNA_L-elsbetiae_contig812.17115.1 ID=mRNA_L-elsbetiae_contig812.17115.1|Name=mRNA_L-elsbetiae_contig812.17115.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1818bp|location=Sequence derived from alignment at L-elsbetiae_contig812:21080..23420+ (Laminarionema elsbetiae ELsaHSoW15)
ACGAAGACGTGCAAGCACCCAGGCTGCGACAAGATCCCGAGCTACGGCTA
CCCGTGTAAATCGCGCGAGTTCTGCAAGCCTCATGCCCCGGAGGGGATGA
TCTACAGCGCGGGGAGCCGGTGCCGCTTCCGAGGGTGTGGGCTACCCGGA
GTGTTCAACTACCCCGGGAGCGCCTGGGGGGGGTCGTTCTGCAGCATCCA
CAAAGAGACGAAGACGTGCAAGCACCCAGGCTGCGACAAGATCCCGAGCT
ACGGCTACCCGTGTAAATCGCGCGAGTTCTGCAAGCCTCATGCCCCGGAG
GGGATGATCTACAGCGCGGGGAGCCGGTGCCGCTTCCGAGGGTGTGGGCT
ACCCGGAGTGTTCAACTACCCCGGGAGCGCCTGGGGGGGGTCGTTCTGCA
GCATCCACAAAGAGGACGACATGGTGGACAGTACGCCGAAGTCGTGTGAG
TCTGTCGGGTGCAAGTACGCGGCGAACTTCGGGGACACCACGCAGCGGAC
GAGAAGATTTTGCGCTAGGCACAAGCTCGGAGGAATGTTGAGCTACCAAG
AACTGGACGACATGGTGGACAGTACGCCGAAGTCGTGTGAGTCTGTCGGG
TGCAAGTACGCGGCGAACTTCGGGGACACCACGCAGCGGACGAGAAGATT
TTGCGCTAGGCACAAGCTCGGAGGAATGTTGAGCTACCAAGAACTGTGGC
CGAGACCCGAAGACAAGACGACAAATGTGACGCCCCTCCCCACCAACGCC
GAAAAGGCCTTCGCGGCAGACCTTGCGGCGGCAGCAGCACCGGTATCGAT
GACTTTCGGTTCGGGCCAACCACGGAAGATCACGAGCAGCAACGCTGCTG
AACCTGCAAAGAGACCGCGAACGCATGACATACCGTCACCGGGCGGTCAG
CTGGCGACCGCGCCTGGTCCTTCTACCTCCCAGCGCCCGGAGGGCCGCGG
GCTCGTGGGTGCGGAGCAGCTGAACTTGCCTGCCAATGCGAGCACTCCTG
CGTCCGATGGGATGCTGCCGCCGCCGCCTCGGCTTGTCGCCTCGGTACCT
GGGACCGGGGGACCGGCCGCCCCTGCAAGTTCAGGAATGCATCTCGACTT
TCTGGCCGACGCCGCCGCTTCCGCAACGCTCGGTGGGCACCCAGCAGAAG
ACTTGCACCAGACGCCTGCTGCTGTAGATGGTCTCCCCGGATCGCAGGCT
TCCGCCATTCAAGCCCCGGTGGGAAGCTCTTCGCAAGGCGTTAGTGGTGC
TGCCACGTGGCCGAGACCCGAAGACAAGACGACAAATGTGACGCCCCTCC
CCACCAACGCCGAAAAGGCCTTCGCGGCAGACCTTGCGGCGGCAGCAGCA
CCGGTATCGATGACTTTCGGTTCGGGCCAACCACGGAAGATCACGAGCAG
CAACGCTGCTGAACCTGCAAAGAGACCGCGAACGCATGACATACCGTCAC
CGGGCGGTCAGCTGGCGACCGCGCCTGGTCCTTCTACCTCCCAGCGCCCG
GAGGGCCGCGGGCTCGTGGGTGCGGAGCAGCTGAACTTGCCTGCCAATGC
GAGCACTCCTGCGTCCGATGGGATGCTGCCGCCGCCGCCTCGGCTTGTCG
CCTCGGTACCTGGGACCGGGGGACCGGCCGCCCCTGCAAGTTCAGGAATG
CATCTCGACTTTCTGGCCGACGCCGCCGCTTCCGCAACGCTCGGTGGGCA
CCCAGCAGAAGACTTGCACCAGACGCCTGCTGCTGTAGATGGTCTCCCCG
GATCGCAGGCTTCCGCCATTCAAGCCCCGGTGGGAAGCTCTTCGCAAGGC
GTTAGTGGTGCTGCCACG
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