mRNA_L-elsbetiae_contig8119.17109.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8119.17109.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE) HSP 1 Score: 281 bits (719), Expect = 7.260e-85 Identity = 147/234 (62.82%), Postives = 170/234 (72.65%), Query Frame = -3 Query: 476 MHYRRRVDRRLNVRLLQAEVMETLLYGCASLSLSADH*TKLNGTHRQFLTRYIGWSKRKRTGHPL*YAQALL*TGCEETIEATLRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVSHIGEDLVAFGMEDEKEGAKWQKSALEPEEWFSKIVDVVARFMRRWHAREIEASAKRQLDREVKATXXXXXXXXXXXXXXXXXXXXXXXXXT-AAAGRAAEAVLVAN 1174 M+ RRR +R+L +RLLQAEV+ETLLYGCAS SL+A+H TKLNGTHRQFLTR IGWSKRKR+ PL YAQAL+ GCEETIEAT+RKRRLCFAGFVMRMED RLPK +LLG M+GG GY+GGQE DWVS +GEDLVAF M DEKEG KW++SA +PE W++K+ DV FMR+WH +E E SAK Q RE +A T A RAAEA LVAN Sbjct: 1 MYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWFMRKWHRQEAETSAKHQRAREAEAESTVISGPKRKRGGEAAVGGKKRRPGTNVEASRAAEAALVAN 234
BLAST of mRNA_L-elsbetiae_contig8119.17109.1 vs. uniprot
Match: A0A6H5JCS2_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS2_9PHAE) HSP 1 Score: 284 bits (727), Expect = 1.530e-84 Identity = 150/242 (61.98%), Postives = 174/242 (71.90%), Query Frame = -3 Query: 476 CFRRHGEAMHYRRRVDRRLNVRLLQAEVMETLLYGCASLSLSADH*TKLNGTHRQFLTRYIGWSKRKRTGHPL*YAQALL*TGCEETIEATLRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVSHIGEDLVAFGMEDEKEGAKWQKSALEPEEWFSKIVDVVARFMRRWHAREIEASAKRQLDREVKATXXXXXXXXXXXXXXXXXXXXXXXXXTAA-AGRAAEAVLVAN 1198 C+RR+ +M+ RRR DR+L +RLLQAEV+ETLLYGCAS SL+A+H TKLNGTHRQFLTR IGWSKRKR+ PL YAQAL+ GCEETIEAT+RKRRLCFAGFVMRMED RLPKR+LLG M+GG GY+GGQ DWVS +GE LVAF M DEKEG KW++SA + E W++K+ DV A FMR+WH +E EASAKRQ TA A RAAEA LVAN Sbjct: 97 CYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQGSDWVSRLGEYLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDVAAWFMRKWHRQEAEASAKRQXXXXXXXXSTTISGPKRKRTGEAAVGGKKRRTGTAVEASRAAEAALVAN 338
BLAST of mRNA_L-elsbetiae_contig8119.17109.1 vs. uniprot
Match: A0A6H5JEU3_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEU3_9PHAE) HSP 1 Score: 281 bits (718), Expect = 3.060e-83 Identity = 147/242 (60.74%), Postives = 172/242 (71.07%), Query Frame = -3 Query: 476 CFRRHGEAMHYRRRVDRRLNVRLLQAEVMETLLYGCASLSLSADH*TKLNGTHRQFLTRYIGWSKRKRTGHPL*YAQALL*TGCEETIEATLRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVSHIGEDLVAFGMEDEKEGAKWQKSALEPEEWFSKIVDVVARFMRRWHAREIEASAKRQLDREVKATXXXXXXXXXXXXXXXXXXXXXXXXXTAA-AGRAAEAVLVAN 1198 C+RR+ +M+ RRR DR+L +RLLQAEV+ETLLYGCAS SL+A+H TKLNGTHRQFLTR IGWSKRKR+ PL YAQAL+ GCEETIEAT+RKRRLCFAG +MRMED RLPKR+LLG M+GG GY+GGQE DWVS +GEDLVAF M DEKEG KW++SA +PE W++K+ D A MR+WH +E EASAKR TA A RA EA LVAN Sbjct: 97 CYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGNIMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWLMRKWHRQEAEASAKRXXXXXXXXXSTAISGPKRKRVGEAAVGGKKRRPGTAVEASRATEAALVAN 338
BLAST of mRNA_L-elsbetiae_contig8119.17109.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE) HSP 1 Score: 278 bits (711), Expect = 3.710e-83 Identity = 137/193 (70.98%), Postives = 160/193 (82.90%), Query Frame = -3 Query: 620 CFRRHGEAMHYRRRVDRRLNVRLLQAEVMETLLYGCASLSLSADH*TKLNGTHRQFLTRYIGWSKRKRTGHPL*YAQALL*TGCEETIEATLRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVSHIGEDLVAFGMEDEKEGAKWQKSALEPEEWFSKIVDVVARFMRRWHAREIEASAKRQ 1198 C+RR+ +M+ RRR +R+L +RLLQ+EV+ETLLYGCAS SL+ADH TKLNGTHRQFLTR IGWSKRKR+ PL YAQAL+ GCEETIEAT+RKRRLCFAGFVMRMED+RLPKR+LLG M GG G +GGQE DWVS +GEDLVAF M DEKEG KW++SA +PE W++K+ D VA MR WH E EAS KRQ Sbjct: 55 CYRRNSASMYDRRRANRQLKIRLLQSEVVETLLYGCASWSLTADHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMGGGVGSRGGQESDWVSCLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGVACLMREWHRHEAEASVKRQ 247
BLAST of mRNA_L-elsbetiae_contig8119.17109.1 vs. uniprot
Match: A0A6H5L649_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L649_9PHAE) HSP 1 Score: 275 bits (703), Expect = 1.130e-81 Identity = 133/201 (66.17%), Postives = 163/201 (81.09%), Query Frame = -3 Query: 596 CFRRHGEAMHYRRRVDRRLNVRLLQAEVMETLLYGCASLSLSADH*TKLNGTHRQFLTRYIGWSKRKRTGHPL*YAQALL*TGCEETIEATLRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVSHIGEDLVAFGMEDEKEGAKWQKSALEPEEWFSKIVDVVARFMRRWHAREIEASAKRQLDREVKAT 1198 C+RR+ +M+ RRR +R+L +RLLQAEV+ET LYGCAS SL+ +H KLN THRQFLTR +GWS+RKR+ PL YAQA++ GCEETIEAT+RKRRLCFAGFVMRMED+RLPK +LLG M+GG GY+GGQE DWVS +GEDLVAF M DEKEG KW++SA +PE W+ K+ D A FMR+WH +E E SAKRQ + E +AT Sbjct: 97 CYRRNSASMYDRRRANRQLKIRLLQAEVVETFLYGCASWSLTTEHYAKLNETHRQFLTRCVGWSRRKRSHRPLSYAQAVIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKHILLGAMAGGVGYRGGQEDDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYHKVEDGAAWFMRKWHRQEAEESAKRQREGEERAT 297
BLAST of mRNA_L-elsbetiae_contig8119.17109.1 vs. uniprot
Match: A0A6H5KU62_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU62_9PHAE) HSP 1 Score: 281 bits (719), Expect = 1.140e-81 Identity = 138/200 (69.00%), Postives = 165/200 (82.50%), Query Frame = -3 Query: 599 CFRRHGEAMHYRRRVDRRLNVRLLQAEVMETLLYGCASLSLSADH*TKLNGTHRQFLTRYIGWSKRKRTGHPL*YAQALL*TGCEETIEATLRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVSHIGEDLVAFGMEDEKEGAKWQKSALEPEEWFSKIVDVVARFMRRWHAREIEASAKRQLDREVKA 1198 C+RR+ +M+ RRR +R+L +RLLQAEV+ETLLYGCAS SL+A+H TKLNGTHRQFLTR IGWSKRKR+ PL YAQAL+ GCEETIEAT+R+RRLCF GFVMRMED RLPKR+LLG M+GG GY+GGQE DWVS +GEDLVAF M DEKEG KW++SA E W++K+ D A FMR+WH +E EASAKRQ RE ++ Sbjct: 244 CYRRNSASMYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRQRRLCFGGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRARESRS 443
BLAST of mRNA_L-elsbetiae_contig8119.17109.1 vs. uniprot
Match: A0A6H5LD24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD24_9PHAE) HSP 1 Score: 282 bits (722), Expect = 1.240e-81 Identity = 138/200 (69.00%), Postives = 166/200 (83.00%), Query Frame = -3 Query: 599 CFRRHGEAMHYRRRVDRRLNVRLLQAEVMETLLYGCASLSLSADH*TKLNGTHRQFLTRYIGWSKRKRTGHPL*YAQALL*TGCEETIEATLRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVSHIGEDLVAFGMEDEKEGAKWQKSALEPEEWFSKIVDVVARFMRRWHAREIEASAKRQLDREVKA 1198 C+RR+ +M+ RRR DR+L +RLLQA+V+ETLLYGCAS L+A+H TKLNGTHRQFLTR IGWSKRKR+ PL YAQAL+ GCEETIEAT+RKRRLCFAGFVMRMED+RLPKR+LLG M+GG GY+GGQE DWV +GEDLVAFGM++EKEG +W++SA + E W+ KI D A FMR+WH +E EASAKRQ R +A Sbjct: 287 CYRRNSASMYDRRRADRQLKIRLLQAKVVETLLYGCASWGLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEASAKRQRARGAEA 486
BLAST of mRNA_L-elsbetiae_contig8119.17109.1 vs. uniprot
Match: A0A6H5K065_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K065_9PHAE) HSP 1 Score: 286 bits (733), Expect = 3.620e-80 Identity = 140/200 (70.00%), Postives = 168/200 (84.00%), Query Frame = -3 Query: 599 CFRRHGEAMHYRRRVDRRLNVRLLQAEVMETLLYGCASLSLSADH*TKLNGTHRQFLTRYIGWSKRKRTGHPL*YAQALL*TGCEETIEATLRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVSHIGEDLVAFGMEDEKEGAKWQKSALEPEEWFSKIVDVVARFMRRWHAREIEASAKRQLDREVKA 1198 C+RR+ +M+ RRR DR+L +RLLQAEV+ETLLYGCAS SL+ +H TKLNGTHRQFLTR IGWSKR+R+ PL YAQAL+ GCEETIEAT+RKRRLCFAGFVMRMED+RLPKR+LLG M+GG GY+GGQE DWVS +GEDLVAF M DEKEG KW++SA +PE W++K+ D A F+R+WH +E EA AKRQ REV+A Sbjct: 610 CYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTVEHYTKLNGTHRQFLTRCIGWSKRQRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGDKWKESAKDPEVWYNKVEDGAALFVRKWHRQEAEAPAKRQRAREVEA 809
BLAST of mRNA_L-elsbetiae_contig8119.17109.1 vs. uniprot
Match: A0A6H5JHY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY4_9PHAE) HSP 1 Score: 280 bits (716), Expect = 9.950e-80 Identity = 134/186 (72.04%), Postives = 160/186 (86.02%), Query Frame = -3 Query: 641 CFRRHGEAMHYRRRVDRRLNVRLLQAEVMETLLYGCASLSLSADH*TKLNGTHRQFLTRYIGWSKRKRTGHPL*YAQALL*TGCEETIEATLRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVSHIGEDLVAFGMEDEKEGAKWQKSALEPEEWFSKIVDVVARFMRRWHAREI 1198 C+RR+ +M+ RRR DR+L +RLLQAEV+ETLLYGCASLSL+A+H TKLNGTHRQFLTR IGWSKRKR+ PL YAQAL+ GCEETIEAT+RKRRLCFAGFVMRMED+RLPKR+LLG M+GG GY+GGQE DWVS +GEDLVAF M DEKEG KW++SA +PE W++K+ D A FMR+WH +E+ Sbjct: 249 CYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASLSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEV 434
BLAST of mRNA_L-elsbetiae_contig8119.17109.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE) HSP 1 Score: 271 bits (694), Expect = 1.160e-79 Identity = 130/188 (69.15%), Postives = 159/188 (84.57%), Query Frame = -3 Query: 635 CFRRHGEAMHYRRRVDRRLNVRLLQAEVMETLLYGCASLSLSADH*TKLNGTHRQFLTRYIGWSKRKRTGHPL*YAQALL*TGCEETIEATLRKRRLCFAGFVMRMEDDRLPKRVLLGTMSGGKGYQGGQERDWVSHIGEDLVAFGMEDEKEGAKWQKSALEPEEWFSKIVDVVARFMRRWHAREIEA 1198 C+RR+ +M+ R+R +R+L +RLLQAEV++TLLYGCAS SL+A+H TKLNGTHRQFLTR IGWSKRKR+ PL YAQAL+ GCEETIEAT+RKRRLCFAGFVMRMED+RLPKR+LLG M+GG GY+GGQE DWV +GEDLVAFGM++EKEG +W++SA + E W+ KI D A FMR+WH +E EA Sbjct: 108 CYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQEAEA 295 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8119.17109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8119.17109.1 >prot_L-elsbetiae_contig8119.17109.1 ID=prot_L-elsbetiae_contig8119.17109.1|Name=mRNA_L-elsbetiae_contig8119.17109.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=327bp MYCRKLWRFGALVTPPPETSQKQFWVCRVGSSFVCPCLHPLILTFADRFCback to top mRNA from alignment at L-elsbetiae_contig8119:41..4877+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8119.17109.1 ID=mRNA_L-elsbetiae_contig8119.17109.1|Name=mRNA_L-elsbetiae_contig8119.17109.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4837bp|location=Sequence derived from alignment at L-elsbetiae_contig8119:41..4877+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8119:41..4877+ >mRNA_L-elsbetiae_contig8119.17109.1 ID=mRNA_L-elsbetiae_contig8119.17109.1|Name=mRNA_L-elsbetiae_contig8119.17109.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1962bp|location=Sequence derived from alignment at L-elsbetiae_contig8119:41..4877+ (Laminarionema elsbetiae ELsaHSoW15)back to top |