mRNA_L-elsbetiae_contig81.17094.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig81.17094.1
Unique NamemRNA_L-elsbetiae_contig81.17094.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig81.17094.1 vs. uniprot
Match: D7FV96_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV96_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 9.460e-42
Identity = 191/329 (58.05%), Postives = 219/329 (66.57%), Query Frame = 1 
Query:    1 QVVGDAFVRDGDSSSRAPSLSVLSAALFATCLASQSGDAAAVLHLLKFHGDGVEEVRDENGRTPLHHVCRADDVGLVRLLCQAGADDAAQDCQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREDLLNTKPMFTRGRLPKVLRATLNYIERAEASAAHHDSPTWTAHDGYGSEATAAPM-ASRRSLA---DNHLHRRGSFGQPSPRWGG----QQLTTVSG-----RTLPDQRRYTKESTHTSTADRREREQDRQPREMREGGDVFDGQSEGGLSSAGSRRGGRSKWV 948
            +V+G      GD+SS  PS S LS ALFA  LAS+  DAAAV+ LL+ +G G+ +V D+NGRTPLHH CR DD GLVRLL +AGAD       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      REDLLN++P F RGRLPKVLRATL YI+ AEASA    SPTWTA DGYGSE T A + +SRRS       H         P P   G    QQ+ T S        L   R + K   H +  DR ER +D   RE++  G+V +G++E    S GSRRG R++ V
Sbjct:  389 EVMGAVLAGGGDNSS-VPSCSALSTALFAATLASRYNDAAAVIRLLEVYGRGIADVHDDNGRTPLHHACRGDDAGLVRLLRRAGADPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGFTPREDLLNSEPTFARGRLPKVLRATLAYIQDAEASAPQPQSPTWTAQDGYGSEGTPATVVSSRRSPIGGPSRHAFDINFNSGPEPPSEGEGPLQQIDTASASGKETEALHYYRHHAKGRAHATATDRLERNRDWDLRELQGSGNVLEGRNEDKTFSNGSRRGNRNRLV 716
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BLAST of mRNA_L-elsbetiae_contig81.17094.1 vs. uniprot
Match: A0A6H5L1T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T4_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.990e-30
Identity = 157/392 (40.05%), Postives = 183/392 (46.68%), Query Frame = 1 
Query:   16 AFVRDGDSSSRAPSLSVLSAALFATCLASQSGDAAAVLHLLKFHGDGVEEVRDENGRTPLHHVCRADDVGLVRLLCQAGADDAAQDCQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------REDLLNTKPMFTRGRLPKVLRATLNYIERAEASAAH---------HDSPTWTAHDGYGSEAT-AAPMASRRSLADNHLHRR-----GSFGQPSPRWGG---QQLTTVSG-----RTLPDQRRYTKESTHTSTADRREREQDRQPREMREGGDVFDGQSEGGLSSAGSRRG 930
            A + +G  +SR PS S LS ALFA  LAS+  DAAAV+ LL+  G G+ +VRD+NGRTPLHH CR DD GLVRLL +AGAD  A D  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                                       REDLLN++ MF RGRLPKVLRATL Y++ AEASA             SPTWTA DGYGSE T A  ++SRRS    H          S  QP P  G    QQ+ T S        L   R + K   H +  DR ER +D   RE++  G+V + ++E    S GSRRG
Sbjct:    3 AVLAEGGDNSRVPSCSALSTALFAATLASRYNDAAAVIRLLEVCGRGIADVRDDNGRTPLHHACRGDDAGLVRLLRRAGADPDAHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEDTPLHLAVGFSSVPNDRVGTCTHPNTFHPGNAINHVASEPSLGVRCLEYVHQGRRRSASFPTNTLDLGPIQVRHGNLSCVKALVEGGAKLSRRNTLGFTPREDLLNSETMFARGRLPKVLRATLAYVQDAEASAPQPQWQASAPQSQSPTWTAQDGYGSEDTPATAVSSRRSSIGGHFRHAFDANFDSDAQP-PSEGERPLQQINTASASGKETEALHYYRHHAKGKAHATATDRLERNRDWDLRELQGSGNVLERRNEDESVSNGSRRG 393
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig81.17094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV96_ECTSI9.460e-4258.05Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
A0A6H5L1T4_9PHAE1.990e-3040.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig81contigL-elsbetiae_contig81:15563..17490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue1.5e-39
Seed eggNOG ortholog2880.D7FV96
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-14_000270.1
Exons4
Model size948
Cds size948
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig81.17094.1prot_L-elsbetiae_contig81.17094.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig81 15563..17490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816894.8222415-CDS-L-elsbetiae_contig81:15562..159281622816894.8222415-CDS-L-elsbetiae_contig81:15562..15928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig81 15563..15928 -
1691683893.8742568-CDS-L-elsbetiae_contig81:15562..159281691683893.8742568-CDS-L-elsbetiae_contig81:15562..15928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig81 15563..15928 -
1622816894.8359232-CDS-L-elsbetiae_contig81:16198..163781622816894.8359232-CDS-L-elsbetiae_contig81:16198..16378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig81 16199..16378 -
1691683893.8874202-CDS-L-elsbetiae_contig81:16198..163781691683893.8874202-CDS-L-elsbetiae_contig81:16198..16378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig81 16199..16378 -
1622816894.8460531-CDS-L-elsbetiae_contig81:16644..167671622816894.8460531-CDS-L-elsbetiae_contig81:16644..16767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig81 16645..16767 -
1691683893.9042337-CDS-L-elsbetiae_contig81:16644..167671691683893.9042337-CDS-L-elsbetiae_contig81:16644..16767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig81 16645..16767 -
1622816894.8562675-CDS-L-elsbetiae_contig81:17211..174901622816894.8562675-CDS-L-elsbetiae_contig81:17211..17490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig81 17212..17490 -
1691683893.9222949-CDS-L-elsbetiae_contig81:17211..174901691683893.9222949-CDS-L-elsbetiae_contig81:17211..17490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig81 17212..17490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig81.17094.1

>prot_L-elsbetiae_contig81.17094.1 ID=prot_L-elsbetiae_contig81.17094.1|Name=mRNA_L-elsbetiae_contig81.17094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=316bp
QVVGDAFVRDGDSSSRAPSLSVLSAALFATCLASQSGDAAAVLHLLKFHG
DGVEEVRDENGRTPLHHVCRADDVGLVRLLCQAGADDAAQDCQGNSPLMV
AAATGSLACLQLLVQQGGDLNCSNDDGDTPLHVAVRHGNLSCVKALVEAG
AWLSQRNTQGCTPREDLLNTKPMFTRGRLPKVLRATLNYIERAEASAAHH
DSPTWTAHDGYGSEATAAPMASRRSLADNHLHRRGSFGQPSPRWGGQQLT
TVSGRTLPDQRRYTKESTHTSTADRREREQDRQPREMREGGDVFDGQSEG
GLSSAGSRRGGRSKWV
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mRNA from alignment at L-elsbetiae_contig81:15563..17490-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig81.17094.1 ID=mRNA_L-elsbetiae_contig81.17094.1|Name=mRNA_L-elsbetiae_contig81.17094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1928bp|location=Sequence derived from alignment at L-elsbetiae_contig81:15563..17490- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTCGTAGGCGATGCCTTCGTCAGGGATGGAGACAGCAGTTCCCGAGC
GCCATCCCTCTCGGTCCTATCTGCTGCCCTCTTCGCGACGTGCTTGGCCT
CGCAATCCGGCGATGCAGCAGCCGTGCTCCACCTCCTGAAATTTCACGGT
GACGGCGTAGAAGAAGTGCGGGACGAGAACGGTCGTACACCCCTTCATCA
TGTCTGTCGCGCGGATGATGTTGGCTTAGTCCGGCTCCTCTGCCAGGCTG
GAGCGGACGATGCGGCACAAGACTGCCAGGTAAGGCGGGGCTGAGGCTGG
TTTGTCGCAGATGCCCTGCCGTGACCTTTGCATCTTATTGGCGAAGAAAG
AGCACGAAACGTCGTTTTCAAAGCCCTTAGCCCTAGCCGTTTAGCCCTTT
GGCGCGCACCTTTCATGAGCCGTGGCGGAGCCAATGCGGTGTGAGTTTAC
CCTAACCCCAGGTAGAGCTTGTACGGCAGAAGTCAAGCTGGCTGTTCTTC
AGTTTTCTAAGTCTAAGGAACGCATGATAAACCCAGCATGAACCACTCAC
TAGTCCCTACTTTCATCCCCGCTCTCACGGGTGGTGGGCACCTTCAGATG
CTTTGTTTGTGAGATAGCCAGTTCAAAAATACCAGGGATCGCCGGGAATA
AACGACTCACATGATCCAACCGTTCTCAGAGGTGAACCGATCGACAATGC
GTTTCTGTATTGGAACTCTACAGGGGAATTCACCCTTGATGGTAGCGGCT
GCCACAGGGAGCTTGGCATGTCTTCAGCTCTTGGTCCAACAGGGAGGCGA
TTTGAATTGCTCAAATGATGATGGCGACACGCCGCTGCACGTAGCGGTGA
GAAGCACCTTCATCACCTAAATCAGATGTCTTGCCTACCGCAAAGCCTAA
ACCGTACAGCGCAGGGACAGCGCTGCAAAAGCGAGTGGTAAGTCGGGCGT
AAATATCACTGATCTCTCGTTGACCTTACCGCTGCCCTTGATCGAAGTTT
CTTTGAGGTCGGTTTGGTCCACTATCCGTTTTTTTGCCAACGACAACCGA
ATTGTTTGAAATAAATCGGAGTTGATGGAACACACGGTACCACTTTTGAT
ACCTTCCCCTAGGTGCGGCACGGAAACCTGTCGTGCGTGAAAGCACTTGT
GGAAGCAGGCGCTTGGCTCAGCCAGCGTAACACGCAAGGCTGCACCCCCA
GGGAAGATCTACTCAACACGAAACCCATGTTTACCAGGGGACGCCTACCC
AAGGTCCTTCGAGCAACCTTGAACTACATCGAACGTGCCGAGGTTAGTTC
AGACCATTCGTCGAGCAAAGCATGGGACAGCTGGGTCATGCCACTCCTGC
TCTCCCTTGAACACCGCTTGCTGCTGCATCGTATTTCCGATGAGTGCGAA
TAGTGGTGCCTTCGTTGCAAGCTGCCCGATGGCCGCAGCTTCTGTGGGAA
TCAGCTCACAAGTACCCATCCATCGCTAGGTAGTGGGTATCAGCCCAACC
TTTGTTCACTTGCGCCTGCGCCTCATGCCGTCCCCACCTCCACCTCCGCG
GTTTCTGCGAAGGCATCGGCGGCACACCACGATTCTCCGACTTGGACAGC
GCATGATGGATACGGATCGGAAGCTACGGCAGCCCCGATGGCCTCTCGTC
GGAGCCTCGCCGACAACCATCTCCACCGCCGTGGCTCTTTCGGACAGCCT
TCTCCTAGATGGGGAGGGCAGCAGCTCACCACCGTCAGCGGGAGGACGTT
GCCCGATCAACGACGCTACACAAAAGAAAGCACGCACACGTCGACCGCAG
ACCGACGAGAGCGCGAACAGGATCGGCAGCCGCGGGAAATGCGAGAGGGC
GGAGACGTTTTCGACGGGCAGAGCGAGGGTGGACTTTCTTCCGCCGGTAG
CAGGCGAGGGGGGCGGAGCAAGTGGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig81:15563..17490-

>mRNA_L-elsbetiae_contig81.17094.1 ID=mRNA_L-elsbetiae_contig81.17094.1|Name=mRNA_L-elsbetiae_contig81.17094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1896bp|location=Sequence derived from alignment at L-elsbetiae_contig81:15563..17490- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTCGTAGGCGATGCCTTCGTCAGGGATGGAGACAGCAGTTCCCGAGC
GCCATCCCTCTCGGTCCTATCTGCTGCCCTCTTCGCGACGTGCTTGGCCT
CGCAATCCGGCGATGCAGCAGCCGTGCTCCACCTCCTGAAATTTCACGGT
GACGGCGTAGAAGAAGTGCGGGACGAGAACGGTCGTACACCCCTTCATCA
TGTCTGTCGCGCGGATGATGTTGGCTTAGTCCGGCTCCTCTGCCAGGCTG
GAGCGGACGATGCGGCACAAGACTGCCAGCAGGTCGTAGGCGATGCCTTC
GTCAGGGATGGAGACAGCAGTTCCCGAGCGCCATCCCTCTCGGTCCTATC
TGCTGCCCTCTTCGCGACGTGCTTGGCCTCGCAATCCGGCGATGCAGCAG
CCGTGCTCCACCTCCTGAAATTTCACGGTGACGGCGTAGAAGAAGTGCGG
GACGAGAACGGTCGTACACCCCTTCATCATGTCTGTCGCGCGGATGATGT
TGGCTTAGTCCGGCTCCTCTGCCAGGCTGGAGCGGACGATGCGGCACAAG
ACTGCCAGGGGAATTCACCCTTGATGGTAGCGGCTGCCACAGGGAGCTTG
GCATGTCTTCAGCTCTTGGTCCAACAGGGAGGCGATTTGAATTGCTCAAA
TGATGATGGCGACACGCCGCTGCACGTAGCGGGGAATTCACCCTTGATGG
TAGCGGCTGCCACAGGGAGCTTGGCATGTCTTCAGCTCTTGGTCCAACAG
GGAGGCGATTTGAATTGCTCAAATGATGATGGCGACACGCCGCTGCACGT
AGCGGTGCGGCACGGAAACCTGTCGTGCGTGAAAGCACTTGTGGAAGCAG
GCGCTTGGCTCAGCCAGCGTAACACGCAAGGCTGCACCCCCAGGGAAGAT
CTACTCAACACGAAACCCATGTTTACCAGGGGACGCCTACCCAAGGTCCT
TCGAGCAACCTTGAACTACATCGAACGTGCCGAGGTGCGGCACGGAAACC
TGTCGTGCGTGAAAGCACTTGTGGAAGCAGGCGCTTGGCTCAGCCAGCGT
AACACGCAAGGCTGCACCCCCAGGGAAGATCTACTCAACACGAAACCCAT
GTTTACCAGGGGACGCCTACCCAAGGTCCTTCGAGCAACCTTGAACTACA
TCGAACGTGCCGAGGCATCGGCGGCACACCACGATTCTCCGACTTGGACA
GCGCATGATGGATACGGATCGGAAGCTACGGCAGCCCCGATGGCCTCTCG
TCGGAGCCTCGCCGACAACCATCTCCACCGCCGTGGCTCTTTCGGACAGC
CTTCTCCTAGATGGGGAGGGCAGCAGCTCACCACCGTCAGCGGGAGGACG
TTGCCCGATCAACGACGCTACACAAAAGAAAGCACGCACACGTCGACCGC
AGACCGACGAGAGCGCGAACAGGATCGGCAGCCGCGGGAAATGCGAGAGG
GCGGAGACGTTTTCGACGGGCAGAGCGAGGGTGGACTTTCTTCCGCCGGT
AGCAGGCGAGGGGGGCGGAGCAAGTGGGTAGCATCGGCGGCACACCACGA
TTCTCCGACTTGGACAGCGCATGATGGATACGGATCGGAAGCTACGGCAG
CCCCGATGGCCTCTCGTCGGAGCCTCGCCGACAACCATCTCCACCGCCGT
GGCTCTTTCGGACAGCCTTCTCCTAGATGGGGAGGGCAGCAGCTCACCAC
CGTCAGCGGGAGGACGTTGCCCGATCAACGACGCTACACAAAAGAAAGCA
CGCACACGTCGACCGCAGACCGACGAGAGCGCGAACAGGATCGGCAGCCG
CGGGAAATGCGAGAGGGCGGAGACGTTTTCGACGGGCAGAGCGAGGGTGG
ACTTTCTTCCGCCGGTAGCAGGCGAGGGGGGCGGAGCAAGTGGGTA
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