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Homology
BLAST of mRNA_L-elsbetiae_contig807.17062.1 vs. uniprot
Match: D7FGR5_ECTSI (Transcription factor prr1 (Pombe response regulator 1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR5_ECTSI) HSP 1 Score: 148 bits (374), Expect = 4.450e-40 Identity = 76/97 (78.35%), Postives = 84/97 (86.60%), Query Frame = 1
Query: 58 GMRMEFWEKARKRRTMSTQLVFPGQPPENTKDIDQPDPSLCDVMDVICQCMEVRNSSSESQQSQLSAFSGCSFNMDSLRRSSISDLLNCMSWESALR 348
GMRM +WEK RKRRT+S QLVFP QPP NT+ IDQPDPSLCDVMDVICQCMEV++SS +SQLSA SGCSF +S+RRSSISDLLNCMSWESALR
Sbjct: 255 GMRMAYWEKNRKRRTLSAQLVFPVQPPNNTETIDQPDPSLCDVMDVICQCMEVQSSS----ESQLSALSGCSFKRESMRRSSISDLLNCMSWESALR 347
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | Heat Shock transcription factor |
Ec32 ortholog | Ec-04_001150.1 |
Exons | 3 |
Model size | 348 |
Cds size | 345 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816892.2192416-CDS-L-elsbetiae_contig807:27026..27062 | 1622816892.2192416-CDS-L-elsbetiae_contig807:27026..27062 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig807 27027..27062 - |
1691683891.8653953-CDS-L-elsbetiae_contig807:27026..27062 | 1691683891.8653953-CDS-L-elsbetiae_contig807:27026..27062 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig807 27027..27062 - |
1622816892.2328486-CDS-L-elsbetiae_contig807:27900..28031 | 1622816892.2328486-CDS-L-elsbetiae_contig807:27900..28031 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig807 27901..28031 - |
1691683891.8814712-CDS-L-elsbetiae_contig807:27900..28031 | 1691683891.8814712-CDS-L-elsbetiae_contig807:27900..28031 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig807 27901..28031 - |
1622816892.245975-CDS-L-elsbetiae_contig807:29206..29384 | 1622816892.245975-CDS-L-elsbetiae_contig807:29206..29384 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig807 29207..29384 - |
1691683891.8913214-CDS-L-elsbetiae_contig807:29206..29384 | 1691683891.8913214-CDS-L-elsbetiae_contig807:29206..29384 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig807 29207..29384 - |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816892.2596304-UTR-L-elsbetiae_contig807:29384..29387 | 1622816892.2596304-UTR-L-elsbetiae_contig807:29384..29387 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig807 29385..29387 - |
1691683891.9021342-UTR-L-elsbetiae_contig807:29384..29387 | 1691683891.9021342-UTR-L-elsbetiae_contig807:29384..29387 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig807 29385..29387 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig807.17062.1 >prot_L-elsbetiae_contig807.17062.1 ID=prot_L-elsbetiae_contig807.17062.1|Name=mRNA_L-elsbetiae_contig807.17062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MGMGMGGGASTASSGGGPGMRMEFWEKARKRRTMSTQLVFPGQPPENTKD IDQPDPSLCDVMDVICQCMEVRNSSSESQQSQLSAFSGCSFNMDSLRRSS ISDLLNCMSWESALR back to topmRNA from alignment at L-elsbetiae_contig807:27027..29387- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig807.17062.1 ID=mRNA_L-elsbetiae_contig807.17062.1|Name=mRNA_L-elsbetiae_contig807.17062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2361bp|location=Sequence derived from alignment at L-elsbetiae_contig807:27027..29387- (Laminarionema elsbetiae ELsaHSoW15) GGCATGGGTATGGGCATGGGCGGTGGGGCAAGCACAGCGTCGTCCGGCGG
GGGGCCGGGGATGCGGATGGAGTTCTGGGAGAAGGCGCGAAAACGGAGGA
CGATGTCGACGCAGCTGGTGTTCCCGGGCCAGCCTCCGGAGAACACGAAG
GACATCGACCAGCCGGATCCCAGCCTGTGCGGTGAGTTGAGAGCCCCTTT
CTTCTCCCTCCGGCCTGTTATCAGGGAAAAAAAACGTTTTGAAGAGTTGC
CCGACATGCGGATGGCGCCACCACCAAAGACCCGCGGGCGTTTCATTAAA
TAAACGGCTGTTTGCTTTTCTCTTCGCTTCCAGCAAGCCTATCCCTTGTT
TTGCCCGAATCTGCCCGAAGCTCGGGTTTTATTTTCTGCGCGGGCATCTT
TGTATGCGTTTTATTCATGTGTGGGTTCTTATCCGGGCGGGCGCCTCAAG
TACACCCAGAAGATGTCGACTGCATACCAAAGTCCTTAAGTGGTGGCCCC
ATCTGCATGGGTAAAAAATTAGCCCGGAATCGGTGTGTGCCTGGGACCGC
CTGTATGCTGCGCGGACTGCAATGCCACACTTGGAGTAGTTGTGGGTTCT
GCCCCACTCAGGACAGTTCAGGGCGGGCGGCTAGTCACTCTCTGACAAGA
CAAACCTTTTCAAGCACCGACGATTAGGACGCTCGGAACTTGGGGTTCGA
GTTGCGACTTTTGCCACTTGAGAAAACTTTTCAGTGCAACATGTATATGG
GTGGTTCACTCAGAAGTATGTTCTTGTGCATGTGGTTTTGCGAGATGCAA
ACTTGAATCAGGCGTAGTTCGATAATTTCTCAAAGAAGGTTGGCAATGGA
ACCACAGCGTTCTAGCTGCCTGCACCAAGCAATCGTGCTGACGAGTACAC
AGAAAGAGTCTCGCGGAGGCTAGAACGCGGTTAGTTTCTGCCCAGTTTTA
TGGGCCTGACAATCCAATTGTTGTGCTGTTCGATAGCGCGGCGATCCGAG
CCTTCGTTTGCCCCGGTACCATCCGCAGGAGGTCAAGGCCAAGTTGAGTT
CATGGCATCCCTCACCCTGTATCGCCTGGTTGTACGCTTTTTTCTCTACC
GTTCCGTTTCCGACGCGGTTGAGCCTGGCCTCAATTGTGTCCACGACGAG
CGAGAATGTCGATGTTGTTCTTGGCCCGGAGTAGTTTGTTCCGCACTGCT
ACCTGCACACAGCCCCCACGCACACCCATAAAGGGGTTCACTTCCCCCTG
GACTAAAGCCCCCCCTCCCCCCCCCCTCCCACCCGCCGCCATGGTGTCGC
CTGGGTTGCTTCGTTGACGAAAAAAACGTGCGTCTGTCTGCCTGGCGCTT
TTTCAGACGTGATGGACGTGATCTGTCAGTGTATGGAGGTCCGTAACTCG
TCTTCGGAGTCTCAACAGTCCCAGCTGTCGGCGTTTAGCGGGTGCTCCTT
CAACATGGATTCCTTGAGACGCTCGAGCATTTCGGATGTGAGTAACTTAT
GTATGTCTGTGTGTGTGTGCGTGCACACAACTCGCGAACGAAAGGCTGTG
GCGTTACCGCAGCGTACAAGTTGGCGTGCAGGTCGTGGTAGACCCCACCC
CCCCGCGTGGCGTCTTGTCGGGGGAGAGGCCCGAAGTCCGAAATAGCTTT
GTGTCACTATCGTTGTTGGAAAGCTGCTCTCTGCTTCCGCTGCGGTTGGG
GGTGACTATTGATAACTGTTTGTCGAAAGGCCACGCAACTTTGGATTTTT
TCACCGCTTGCGGTGCGGTGGTTGTGGTTCGGATGGCGGTTCGCACCTCT
GCGTTGTCCTTGCTGTGGAGGCGTGCGAAGCGAGCGAGCGCCGGGCATTA
ATACTTCGCATGCTCAAATCGATGCCCTGTTTCCTCTCTGGGGTGCCCCG
CGCTTGCTGCCGCCAGCTTGCCGCGCGCTTCATGGGTGCAATGTTGAACA
TCGTTTGGTTTGGTTTGCGCAGTGGACAGAATGCCAAAAGCCGGCGTATA
TTCACGTTTTCTGACTTATCCTGGAGCACTGCCGTGCCCGCCTCCCATGC
AGGAGGTCCAGCGTTTTGTTTTTCGTGCAGAACTGCTGCGGCCTGTCAGT
ATTTATGCTATACGATATCGTTTATTTGTAGTCCAGCTGCAGGGCTTCCC
GTTTTGCTGGCAGGAAATGTGGGGATGGAACGCTTCTGCTCTCCGCCACT
GCATATCTCAGCCCCCCCCCCCCCCTGACTGATTCTCCGGCCCTGATGGT
TCCCCTCTGGTTTCTCTTCTGTGTCTTGCCTGATTGCCTGCCTGCTTGCT
TGCGTGCTTGCCTTCTTTCCCGCAGCTGCTAAACTGCATGTCTTGGGAGA
GCGCCTTGCGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig807:27027..29387- >mRNA_L-elsbetiae_contig807.17062.1 ID=mRNA_L-elsbetiae_contig807.17062.1|Name=mRNA_L-elsbetiae_contig807.17062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig807:27027..29387- (Laminarionema elsbetiae ELsaHSoW15) ATGGGTATGGGCATGGGCGGTGGGGCAAGCACAGCGTCGTCCGGCGGGGG GCCGGGGATGCGGATGGAGTTCTGGGAGAAGGCGCGAAAACGGAGGACGA TGTCGACGCAGCTGGTGTTCCCGGGCCAGCCTCCGGAGAACACGAAGGAC ATCGACCAGCCGGATCCCAGCCTGTGCGATGGGTATGGGCATGGGCGGTG GGGCAAGCACAGCGTCGTCCGGCGGGGGGCCGGGGATGCGGATGGAGTTC TGGGAGAAGGCGCGAAAACGGAGGACGATGTCGACGCAGCTGGTGTTCCC GGGCCAGCCTCCGGAGAACACGAAGGACATCGACCAGCCGGATCCCAGCC TGTGCGACGTGATGGACGTGATCTGTCAGTGTATGGAGGTCCGTAACTCG TCTTCGGAGTCTCAACAGTCCCAGCTGTCGGCGTTTAGCGGGTGCTCCTT CAACATGGATTCCTTGAGACGCTCGAGCATTTCGGATACGTGATGGACGT GATCTGTCAGTGTATGGAGGTCCGTAACTCGTCTTCGGAGTCTCAACAGT CCCAGCTGTCGGCGTTTAGCGGGTGCTCCTTCAACATGGATTCCTTGAGA CGCTCGAGCATTTCGGATCTGCTAAACTGCATGTCTTGGGAGAGCGCCTT GCGGCTGCTAAACTGCATGTCTTGGGAGAGCGCCTTGCGG back to top
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