mRNA_L-elsbetiae_contig807.17062.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig807.17062.1
Unique NamemRNA_L-elsbetiae_contig807.17062.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig807.17062.1 vs. uniprot
Match: D7FGR5_ECTSI (Transcription factor prr1 (Pombe response regulator 1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR5_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 4.450e-40
Identity = 76/97 (78.35%), Postives = 84/97 (86.60%), Query Frame = 1
Query:   58 GMRMEFWEKARKRRTMSTQLVFPGQPPENTKDIDQPDPSLCDVMDVICQCMEVRNSSSESQQSQLSAFSGCSFNMDSLRRSSISDLLNCMSWESALR 348
            GMRM +WEK RKRRT+S QLVFP QPP NT+ IDQPDPSLCDVMDVICQCMEV++SS    +SQLSA SGCSF  +S+RRSSISDLLNCMSWESALR
Sbjct:  255 GMRMAYWEKNRKRRTLSAQLVFPVQPPNNTETIDQPDPSLCDVMDVICQCMEVQSSS----ESQLSALSGCSFKRESMRRSSISDLLNCMSWESALR 347          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig807.17062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGR5_ECTSI4.450e-4078.35Transcription factor prr1 (Pombe response regulato... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig807contigL-elsbetiae_contig807:27027..29387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-04_001150.1
Exons3
Model size348
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig807.17062.1prot_L-elsbetiae_contig807.17062.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig807 27027..29384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.2192416-CDS-L-elsbetiae_contig807:27026..270621622816892.2192416-CDS-L-elsbetiae_contig807:27026..27062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 27027..27062 -
1691683891.8653953-CDS-L-elsbetiae_contig807:27026..270621691683891.8653953-CDS-L-elsbetiae_contig807:27026..27062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 27027..27062 -
1622816892.2328486-CDS-L-elsbetiae_contig807:27900..280311622816892.2328486-CDS-L-elsbetiae_contig807:27900..28031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 27901..28031 -
1691683891.8814712-CDS-L-elsbetiae_contig807:27900..280311691683891.8814712-CDS-L-elsbetiae_contig807:27900..28031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 27901..28031 -
1622816892.245975-CDS-L-elsbetiae_contig807:29206..293841622816892.245975-CDS-L-elsbetiae_contig807:29206..29384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 29207..29384 -
1691683891.8913214-CDS-L-elsbetiae_contig807:29206..293841691683891.8913214-CDS-L-elsbetiae_contig807:29206..29384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 29207..29384 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.2596304-UTR-L-elsbetiae_contig807:29384..293871622816892.2596304-UTR-L-elsbetiae_contig807:29384..29387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig807 29385..29387 -
1691683891.9021342-UTR-L-elsbetiae_contig807:29384..293871691683891.9021342-UTR-L-elsbetiae_contig807:29384..29387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig807 29385..29387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig807.17062.1

>prot_L-elsbetiae_contig807.17062.1 ID=prot_L-elsbetiae_contig807.17062.1|Name=mRNA_L-elsbetiae_contig807.17062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MGMGMGGGASTASSGGGPGMRMEFWEKARKRRTMSTQLVFPGQPPENTKD
IDQPDPSLCDVMDVICQCMEVRNSSSESQQSQLSAFSGCSFNMDSLRRSS
ISDLLNCMSWESALR
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mRNA from alignment at L-elsbetiae_contig807:27027..29387-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig807.17062.1 ID=mRNA_L-elsbetiae_contig807.17062.1|Name=mRNA_L-elsbetiae_contig807.17062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2361bp|location=Sequence derived from alignment at L-elsbetiae_contig807:27027..29387- (Laminarionema elsbetiae ELsaHSoW15)
GGCATGGGTATGGGCATGGGCGGTGGGGCAAGCACAGCGTCGTCCGGCGG GGGGCCGGGGATGCGGATGGAGTTCTGGGAGAAGGCGCGAAAACGGAGGA CGATGTCGACGCAGCTGGTGTTCCCGGGCCAGCCTCCGGAGAACACGAAG GACATCGACCAGCCGGATCCCAGCCTGTGCGGTGAGTTGAGAGCCCCTTT CTTCTCCCTCCGGCCTGTTATCAGGGAAAAAAAACGTTTTGAAGAGTTGC CCGACATGCGGATGGCGCCACCACCAAAGACCCGCGGGCGTTTCATTAAA TAAACGGCTGTTTGCTTTTCTCTTCGCTTCCAGCAAGCCTATCCCTTGTT TTGCCCGAATCTGCCCGAAGCTCGGGTTTTATTTTCTGCGCGGGCATCTT TGTATGCGTTTTATTCATGTGTGGGTTCTTATCCGGGCGGGCGCCTCAAG TACACCCAGAAGATGTCGACTGCATACCAAAGTCCTTAAGTGGTGGCCCC ATCTGCATGGGTAAAAAATTAGCCCGGAATCGGTGTGTGCCTGGGACCGC CTGTATGCTGCGCGGACTGCAATGCCACACTTGGAGTAGTTGTGGGTTCT GCCCCACTCAGGACAGTTCAGGGCGGGCGGCTAGTCACTCTCTGACAAGA CAAACCTTTTCAAGCACCGACGATTAGGACGCTCGGAACTTGGGGTTCGA GTTGCGACTTTTGCCACTTGAGAAAACTTTTCAGTGCAACATGTATATGG GTGGTTCACTCAGAAGTATGTTCTTGTGCATGTGGTTTTGCGAGATGCAA ACTTGAATCAGGCGTAGTTCGATAATTTCTCAAAGAAGGTTGGCAATGGA ACCACAGCGTTCTAGCTGCCTGCACCAAGCAATCGTGCTGACGAGTACAC AGAAAGAGTCTCGCGGAGGCTAGAACGCGGTTAGTTTCTGCCCAGTTTTA TGGGCCTGACAATCCAATTGTTGTGCTGTTCGATAGCGCGGCGATCCGAG CCTTCGTTTGCCCCGGTACCATCCGCAGGAGGTCAAGGCCAAGTTGAGTT CATGGCATCCCTCACCCTGTATCGCCTGGTTGTACGCTTTTTTCTCTACC GTTCCGTTTCCGACGCGGTTGAGCCTGGCCTCAATTGTGTCCACGACGAG CGAGAATGTCGATGTTGTTCTTGGCCCGGAGTAGTTTGTTCCGCACTGCT ACCTGCACACAGCCCCCACGCACACCCATAAAGGGGTTCACTTCCCCCTG GACTAAAGCCCCCCCTCCCCCCCCCCTCCCACCCGCCGCCATGGTGTCGC CTGGGTTGCTTCGTTGACGAAAAAAACGTGCGTCTGTCTGCCTGGCGCTT TTTCAGACGTGATGGACGTGATCTGTCAGTGTATGGAGGTCCGTAACTCG TCTTCGGAGTCTCAACAGTCCCAGCTGTCGGCGTTTAGCGGGTGCTCCTT CAACATGGATTCCTTGAGACGCTCGAGCATTTCGGATGTGAGTAACTTAT GTATGTCTGTGTGTGTGTGCGTGCACACAACTCGCGAACGAAAGGCTGTG GCGTTACCGCAGCGTACAAGTTGGCGTGCAGGTCGTGGTAGACCCCACCC CCCCGCGTGGCGTCTTGTCGGGGGAGAGGCCCGAAGTCCGAAATAGCTTT GTGTCACTATCGTTGTTGGAAAGCTGCTCTCTGCTTCCGCTGCGGTTGGG GGTGACTATTGATAACTGTTTGTCGAAAGGCCACGCAACTTTGGATTTTT TCACCGCTTGCGGTGCGGTGGTTGTGGTTCGGATGGCGGTTCGCACCTCT GCGTTGTCCTTGCTGTGGAGGCGTGCGAAGCGAGCGAGCGCCGGGCATTA ATACTTCGCATGCTCAAATCGATGCCCTGTTTCCTCTCTGGGGTGCCCCG CGCTTGCTGCCGCCAGCTTGCCGCGCGCTTCATGGGTGCAATGTTGAACA TCGTTTGGTTTGGTTTGCGCAGTGGACAGAATGCCAAAAGCCGGCGTATA TTCACGTTTTCTGACTTATCCTGGAGCACTGCCGTGCCCGCCTCCCATGC AGGAGGTCCAGCGTTTTGTTTTTCGTGCAGAACTGCTGCGGCCTGTCAGT ATTTATGCTATACGATATCGTTTATTTGTAGTCCAGCTGCAGGGCTTCCC GTTTTGCTGGCAGGAAATGTGGGGATGGAACGCTTCTGCTCTCCGCCACT GCATATCTCAGCCCCCCCCCCCCCCTGACTGATTCTCCGGCCCTGATGGT TCCCCTCTGGTTTCTCTTCTGTGTCTTGCCTGATTGCCTGCCTGCTTGCT TGCGTGCTTGCCTTCTTTCCCGCAGCTGCTAAACTGCATGTCTTGGGAGA GCGCCTTGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig807:27027..29387-

>mRNA_L-elsbetiae_contig807.17062.1 ID=mRNA_L-elsbetiae_contig807.17062.1|Name=mRNA_L-elsbetiae_contig807.17062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig807:27027..29387- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTATGGGCATGGGCGGTGGGGCAAGCACAGCGTCGTCCGGCGGGGG
GCCGGGGATGCGGATGGAGTTCTGGGAGAAGGCGCGAAAACGGAGGACGA
TGTCGACGCAGCTGGTGTTCCCGGGCCAGCCTCCGGAGAACACGAAGGAC
ATCGACCAGCCGGATCCCAGCCTGTGCGATGGGTATGGGCATGGGCGGTG
GGGCAAGCACAGCGTCGTCCGGCGGGGGGCCGGGGATGCGGATGGAGTTC
TGGGAGAAGGCGCGAAAACGGAGGACGATGTCGACGCAGCTGGTGTTCCC
GGGCCAGCCTCCGGAGAACACGAAGGACATCGACCAGCCGGATCCCAGCC
TGTGCGACGTGATGGACGTGATCTGTCAGTGTATGGAGGTCCGTAACTCG
TCTTCGGAGTCTCAACAGTCCCAGCTGTCGGCGTTTAGCGGGTGCTCCTT
CAACATGGATTCCTTGAGACGCTCGAGCATTTCGGATACGTGATGGACGT
GATCTGTCAGTGTATGGAGGTCCGTAACTCGTCTTCGGAGTCTCAACAGT
CCCAGCTGTCGGCGTTTAGCGGGTGCTCCTTCAACATGGATTCCTTGAGA
CGCTCGAGCATTTCGGATCTGCTAAACTGCATGTCTTGGGAGAGCGCCTT
GCGGCTGCTAAACTGCATGTCTTGGGAGAGCGCCTTGCGG
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