mRNA_L-elsbetiae_contig8060.17054.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8060.17054.1
Unique NamemRNA_L-elsbetiae_contig8060.17054.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8060.17054.1 vs. uniprot
Match: A0A6H5JW92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW92_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.360e-37
Identity = 77/116 (66.38%), Postives = 89/116 (76.72%), Query Frame = 1 
Query:    1 ESDPARLLSEAVGFYRLAADLEEGGGGGTG--------RGLFSLGWMHQHGVGVTADPALARQYYRQSGSAPAIVGLWLMGASELAAEVGAPLAFSVAVVAATMLLFQL---RKRG 315
            ESD A+LLS+AV +Y+LAA   EGGGG  G        RGLFSLGWMHQHGVGV ADPALAR+ YR+SGSAPA++GLW+MGAS+LA E+GAPLA S  VVAATML  +L   R RG
Sbjct:   83 ESDAAQLLSDAVAYYKLAA---EGGGGEGGLGGSSPSQRGLFSLGWMHQHGVGVEADPALARELYRRSGSAPALLGLWMMGASDLALEIGAPLAVSAVVVAATMLAMRLLGKRHRG 195
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BLAST of mRNA_L-elsbetiae_contig8060.17054.1 vs. uniprot
Match: D8LMU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU4_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 9.500e-35
Identity = 73/101 (72.28%), Postives = 85/101 (84.16%), Query Frame = 1 
Query:    1 ESDPARLLSEAVGFYRLAAD--LEEGGGGGTG---RGLFSLGWMHQHGVGVTADPALARQYYRQSGSAPAIVGLWLMGASELAAEVGAPLAFSVAVVAATM 288
            ESD A+LLS+AV +YRLAA+    EGG GG+    RGLFSLGWMHQHGVGV ADPALAR+ YR+SGSAPA++GLW+MGAS+LA E+GAPLA SV VVAATM
Sbjct:  970 ESDAAQLLSDAVAYYRLAAEGGRGEGGLGGSSPSQRGLFSLGWMHQHGVGVEADPALARELYRRSGSAPALLGLWMMGASDLALEIGAPLAVSVVVVAATM 1070
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BLAST of mRNA_L-elsbetiae_contig8060.17054.1 vs. uniprot
Match: A0A6H5KY48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY48_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.050e-17
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:  124 HGVGVTADPALARQYYRQSGSAPAIVGLWLMGASELAAEVGAPLAFSVAVVAATMLLFQL---RKRG 315
            HGVGV ADPALAR+ YR+SGS PA++GLW+MGAS+LA E+GAP A S   VAATML  +L   R RG
Sbjct:    9 HGVGVEADPALARELYRRSGSTPALLGLWMMGASDLALEIGAPRAVSAVRVAATMLAMRLLGKRHRG 75
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8060.17054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JW92_9PHAE1.360e-3766.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMU4_ECTSI9.500e-3572.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY48_9PHAE2.050e-1765.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8060contigL-elsbetiae_contig8060:2209..3116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816891.4303312-CDS-L-elsbetiae_contig8060:2210..24501622816891.4303312-CDS-L-elsbetiae_contig8060:2210..2450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8060 2211..2450 -
1691683891.2534418-CDS-L-elsbetiae_contig8060:2210..24501691683891.2534418-CDS-L-elsbetiae_contig8060:2210..2450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8060 2211..2450 -
1622816891.4405427-CDS-L-elsbetiae_contig8060:2993..31161622816891.4405427-CDS-L-elsbetiae_contig8060:2993..3116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8060 2994..3116 -
1691683891.2665272-CDS-L-elsbetiae_contig8060:2993..31161691683891.2665272-CDS-L-elsbetiae_contig8060:2993..3116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8060 2994..3116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8060.17054.1prot_L-elsbetiae_contig8060.17054.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8060 2211..3116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8060.17054.1

>prot_L-elsbetiae_contig8060.17054.1 ID=prot_L-elsbetiae_contig8060.17054.1|Name=mRNA_L-elsbetiae_contig8060.17054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
ESDPARLLSEAVGFYRLAADLEEGGGGGTGRGLFSLGWMHQHGVGVTADP
ALARQYYRQSGSAPAIVGLWLMGASELAAEVGAPLAFSVAVVAATMLLFQ
LRKRGRRGGGGGGGRPSRDHR
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mRNA from alignment at L-elsbetiae_contig8060:2209..3116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8060.17054.1 ID=mRNA_L-elsbetiae_contig8060.17054.1|Name=mRNA_L-elsbetiae_contig8060.17054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=908bp|location=Sequence derived from alignment at L-elsbetiae_contig8060:2209..3116- (Laminarionema elsbetiae ELsaHSoW15)
GAGAGCGACCCGGCGCGGCTGCTCTCCGAGGCGGTGGGCTTCTATCGGCT
CGCCGCCGATCTGGAGGAGGGCGGCGGCGGCGGCACCGGGAGGGGGCTGT
TTTCCCTGGGCTGGATGCACCAGGCGAGTCTTGGTTGTTTCGGTGTGTGT
TCACGCCCTGCCTTGCCCCGTGCGATAGTTCCTGCTAAACTTGCGCGGTG
TTTTTTGGGTTTCCTCCCCGTCATCAGCAGGCGCTGTGTATCGTTGGTGT
CTGGGGGCAGTCTGAGGGGGGGCTTTTCTTGGACGTCCTCGTCCGCTTTT
GAACACATGATGACAGCATGCCTTCCGGGAAGAGGCGTTTCTTTATGTAA
TAAATACTATGGGGTTCGGGGTCCTGAGAGGAGAGACGTGGTACTACTGC
ACACTCTAGCGAACGGCATCGGGCCCCCCCCCCCCGTCCCCCCCCCCCCC
CCCCCCCTGGAGGCCGCGGGGAGAAAAAAAAAACTGCAAACCAAGAGCAA
ATTCCCTCTCTCCCCCTCCTTTCCCCCTCTTACACGCAACGAACACACAC
GCGCGAAACCATACCCGAAGGTACGCACATAAATACCGCCGTGTTCTAGC
CTGACCCGCGATATTTCGTTTCCTCGTATATGGGTGTCCGTCTCATGCTG
TATCGGACCGGCGCAGCACGGGGTCGGAGTCACCGCCGATCCGGCCCTGG
CGCGTCAGTACTACCGGCAGTCGGGGTCCGCCCCCGCGATCGTGGGCCTC
TGGCTCATGGGGGCCTCGGAGCTGGCCGCCGAAGTGGGGGCGCCGCTCGC
GTTTTCGGTTGCAGTCGTGGCGGCAACGATGCTGCTTTTTCAGCTGAGGA
AGCGGGGCCGCCGCGGCGGCGGCGGCGGCGGCGGCCGGCCTAGCCGGGAT
CACCGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8060:2209..3116-

>mRNA_L-elsbetiae_contig8060.17054.1 ID=mRNA_L-elsbetiae_contig8060.17054.1|Name=mRNA_L-elsbetiae_contig8060.17054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig8060:2209..3116- (Laminarionema elsbetiae ELsaHSoW15)
GAGAGCGACCCGGCGCGGCTGCTCTCCGAGGCGGTGGGCTTCTATCGGCT
CGCCGCCGATCTGGAGGAGGGCGGCGGCGGCGGCACCGGGAGGGGGCTGT
TTTCCCTGGGCTGGATGCACCAGGAGAGCGACCCGGCGCGGCTGCTCTCC
GAGGCGGTGGGCTTCTATCGGCTCGCCGCCGATCTGGAGGAGGGCGGCGG
CGGCGGCACCGGGAGGGGGCTGTTTTCCCTGGGCTGGATGCACCAGCACG
GGGTCGGAGTCACCGCCGATCCGGCCCTGGCGCGTCAGTACTACCGGCAG
TCGGGGTCCGCCCCCGCGATCGTGGGCCTCTGGCTCATGGGGGCCTCGGA
GCTGGCCGCCGAAGTGGGGGCGCCGCTCGCGTTTTCGGTTGCAGTCGTGG
CGGCAACGATGCTGCTTTTTCAGCTGAGGAAGCGGGGCCGCCGCGGCGGC
GGCGGCGGCGGCGGCCGGCCTAGCCGGGATCACCGGCACGGGGTCGGAGT
CACCGCCGATCCGGCCCTGGCGCGTCAGTACTACCGGCAGTCGGGGTCCG
CCCCCGCGATCGTGGGCCTCTGGCTCATGGGGGCCTCGGAGCTGGCCGCC
GAAGTGGGGGCGCCGCTCGCGTTTTCGGTTGCAGTCGTGGCGGCAACGAT
GCTGCTTTTTCAGCTGAGGAAGCGGGGCCGCCGCGGCGGCGGCGGCGGCG
GCGGCCGGCCTAGCCGGGATCACCGG
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