mRNA_L-elsbetiae_contig805.17040.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig805.17040.1
Unique NamemRNA_L-elsbetiae_contig805.17040.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig805.17040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig805contigL-elsbetiae_contig805:27186..27629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig805.17040.1prot_L-elsbetiae_contig805.17040.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig805 27250..27561 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.634322-UTR-L-elsbetiae_contig805:27185..272491622816889.634322-UTR-L-elsbetiae_contig805:27185..27249Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig805 27186..27249 +
1691683889.7502096-UTR-L-elsbetiae_contig805:27185..272491691683889.7502096-UTR-L-elsbetiae_contig805:27185..27249Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig805 27186..27249 +
1622816889.6555302-UTR-L-elsbetiae_contig805:27561..276291622816889.6555302-UTR-L-elsbetiae_contig805:27561..27629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig805 27562..27629 +
1691683889.7759678-UTR-L-elsbetiae_contig805:27561..276291691683889.7759678-UTR-L-elsbetiae_contig805:27561..27629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig805 27562..27629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.6450741-CDS-L-elsbetiae_contig805:27249..275611622816889.6450741-CDS-L-elsbetiae_contig805:27249..27561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig805 27250..27561 +
1691683889.7589405-CDS-L-elsbetiae_contig805:27249..275611691683889.7589405-CDS-L-elsbetiae_contig805:27249..27561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig805 27250..27561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig805.17040.1

>prot_L-elsbetiae_contig805.17040.1 ID=prot_L-elsbetiae_contig805.17040.1|Name=mRNA_L-elsbetiae_contig805.17040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MYFLRRLFEERRLALCAFLPFHADESFEIFQKYSDFRGRKELLEPAFSVK
TKNKPCAQIIFNCIHISYLLHAIHGKWGERGEERVFWANNTARRPGWRAD
VSK*
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mRNA from alignment at L-elsbetiae_contig805:27186..27629+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig805.17040.1 ID=mRNA_L-elsbetiae_contig805.17040.1|Name=mRNA_L-elsbetiae_contig805.17040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig805:27186..27629+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTCTCATAGTTCTCGGCGCGGGGCCCCTCGAGGTGATAGGCGCATCGC
ATGAAGAGGGAGGTATGTACTTTCTTCGAAGATTGTTTGAAGAAAGGCGT
TTGGCGTTGTGTGCATTCCTTCCATTCCATGCGGACGAGAGCTTCGAAAT
ATTCCAGAAATACTCAGATTTTAGAGGGCGGAAGGAGTTACTTGAGCCGG
CCTTCAGCGTAAAGACTAAAAACAAGCCATGTGCACAGATCATTTTTAAT
TGTATTCATATCTCGTACCTCCTCCATGCAATCCATGGAAAATGGGGGGA
AAGAGGGGAAGAGAGGGTATTCTGGGCGAATAATACGGCCAGGCGACCAG
GGTGGAGGGCGGACGTCAGTAAATAAGGTGATGGGAAGTAATCAATTCCG
TAGTACTACAGTTGTATTAGAAACGCGCGAATGTTGCACTTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig805:27186..27629+

>mRNA_L-elsbetiae_contig805.17040.1 ID=mRNA_L-elsbetiae_contig805.17040.1|Name=mRNA_L-elsbetiae_contig805.17040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig805:27186..27629+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTTTCTTCGAAGATTGTTTGAAGAAAGGCGTTTGGCGTTGTGTGC
ATTCCTTCCATTCCATGCGGACGAGAGCTTCGAAATATTCCAGAAATACT
CAGATTTTAGAGGGCGGAAGGAGTTACTTGAGCCGGCCTTCAGCGTAAAG
ACTAAAAACAAGCCATGTGCACAGATCATTTTTAATTGTATTCATATCTC
GTACCTCCTCCATGCAATCCATGGAAAATGGGGGGAAAGAGGGGAAGAGA
GGGTATTCTGGGCGAATAATACGGCCAGGCGACCAGGGTGGAGGGCGGAC
GTCAGTAAATAAATGTACTTTCTTCGAAGATTGTTTGAAGAAAGGCGTTT
GGCGTTGTGTGCATTCCTTCCATTCCATGCGGACGAGAGCTTCGAAATAT
TCCAGAAATACTCAGATTTTAGAGGGCGGAAGGAGTTACTTGAGCCGGCC
TTCAGCGTAAAGACTAAAAACAAGCCATGTGCACAGATCATTTTTAATTG
TATTCATATCTCGTACCTCCTCCATGCAATCCATGGAAAATGGGGGGAAA
GAGGGGAAGAGAGGGTATTCTGGGCGAATAATACGGCCAGGCGACCAGGG
TGGAGGGCGGACGTCAGTAAATAA
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