mRNA_L-elsbetiae_contig805.17039.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig805.17039.1
Unique NamemRNA_L-elsbetiae_contig805.17039.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig805.17039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig805contigL-elsbetiae_contig805:23662..24237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig805.17039.1prot_L-elsbetiae_contig805.17039.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig805 23907..24221 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.580161-UTR-L-elsbetiae_contig805:23661..239061622816889.580161-UTR-L-elsbetiae_contig805:23661..23906Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig805 23662..23906 +
1691683889.7149546-UTR-L-elsbetiae_contig805:23661..239061691683889.7149546-UTR-L-elsbetiae_contig805:23661..23906Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig805 23662..23906 +
1622816889.6017132-UTR-L-elsbetiae_contig805:24221..242371622816889.6017132-UTR-L-elsbetiae_contig805:24221..24237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig805 24222..24237 +
1691683889.7385573-UTR-L-elsbetiae_contig805:24221..242371691683889.7385573-UTR-L-elsbetiae_contig805:24221..24237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig805 24222..24237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.5915208-CDS-L-elsbetiae_contig805:23906..242211622816889.5915208-CDS-L-elsbetiae_contig805:23906..24221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig805 23907..24221 +
1691683889.727898-CDS-L-elsbetiae_contig805:23906..242211691683889.727898-CDS-L-elsbetiae_contig805:23906..24221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig805 23907..24221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig805.17039.1

>prot_L-elsbetiae_contig805.17039.1 ID=prot_L-elsbetiae_contig805.17039.1|Name=mRNA_L-elsbetiae_contig805.17039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MRRYTVYSRLWGSQQSTGGRCRKAYYDTGRNLTHRHRMDTNLDALWSCGS
QLSRKLSELCGLRNTPGVVNKLYVRHRPRYFCDPFIRYIYCDLLADLRNK
QFPR*
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mRNA from alignment at L-elsbetiae_contig805:23662..24237+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig805.17039.1 ID=mRNA_L-elsbetiae_contig805.17039.1|Name=mRNA_L-elsbetiae_contig805.17039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig805:23662..24237+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAAAGCGAGACGGTTGGCCAGGGCGTCACGGCTCGAGCGCACGGCTGC
CATCGCGCAGCAGCCGCAACGAGCGGCGGCGGTGTATGATTGACGATTGT
GTTTGGTTTTGAGTTCAGTATTAAGTGTTATATACGACACCGGTGTCGTA
ATTTCTTATGTACGACACCGGGCGTTTCTCAGCCCATACAGCTCGGATTG
TCACACACTCAGGCGAACCATCGTTGAGATCAATGATCCAAGTGTATGCG
GAGATATACCGTATACAGTAGATTATGGGGATCACAACAGAGTACAGGAG
GGCGGTGTCGTAAAGCATATTACGACACCGGGCGCAACTTAACCCACAGG
CATCGGATGGACACAAATCTAGATGCGCTGTGGTCGTGTGGTTCACAGCT
ATCACGCAAGCTATCCGAGCTATGTGGGCTGAGAAACACCCCCGGTGTCG
TAAATAAACTCTACGTACGACACCGCCCTCGGTACTTCTGTGACCCCTTT
ATACGGTATATTTATTGCGATCTCTTGGCGGATTTGCGAAATAAGCAGTT
TCCCAGATAGCTGTGACTTGTGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig805:23662..24237+

>mRNA_L-elsbetiae_contig805.17039.1 ID=mRNA_L-elsbetiae_contig805.17039.1|Name=mRNA_L-elsbetiae_contig805.17039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig805:23662..24237+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAGATATACCGTATACAGTAGATTATGGGGATCACAACAGAGTAC
AGGAGGGCGGTGTCGTAAAGCATATTACGACACCGGGCGCAACTTAACCC
ACAGGCATCGGATGGACACAAATCTAGATGCGCTGTGGTCGTGTGGTTCA
CAGCTATCACGCAAGCTATCCGAGCTATGTGGGCTGAGAAACACCCCCGG
TGTCGTAAATAAACTCTACGTACGACACCGCCCTCGGTACTTCTGTGACC
CCTTTATACGGTATATTTATTGCGATCTCTTGGCGGATTTGCGAAATAAG
CAGTTTCCCAGATAGATGCGGAGATATACCGTATACAGTAGATTATGGGG
ATCACAACAGAGTACAGGAGGGCGGTGTCGTAAAGCATATTACGACACCG
GGCGCAACTTAACCCACAGGCATCGGATGGACACAAATCTAGATGCGCTG
TGGTCGTGTGGTTCACAGCTATCACGCAAGCTATCCGAGCTATGTGGGCT
GAGAAACACCCCCGGTGTCGTAAATAAACTCTACGTACGACACCGCCCTC
GGTACTTCTGTGACCCCTTTATACGGTATATTTATTGCGATCTCTTGGCG
GATTTGCGAAATAAGCAGTTTCCCAGATAG
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