mRNA_L-elsbetiae_contig8042.17031.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8042.17031.1
Unique NamemRNA_L-elsbetiae_contig8042.17031.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8042.17031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8042contigL-elsbetiae_contig8042:5348..7663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size473
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8042.17031.1prot_L-elsbetiae_contig8042.17031.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8042 5348..7504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.2344706-CDS-L-elsbetiae_contig8042:5347..54391622816889.2344706-CDS-L-elsbetiae_contig8042:5347..5439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8042 5348..5439 -
1691683889.4514277-CDS-L-elsbetiae_contig8042:5347..54391691683889.4514277-CDS-L-elsbetiae_contig8042:5347..5439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8042 5348..5439 -
1622816889.248142-CDS-L-elsbetiae_contig8042:5905..60541622816889.248142-CDS-L-elsbetiae_contig8042:5905..6054Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8042 5906..6054 -
1691683889.4638152-CDS-L-elsbetiae_contig8042:5905..60541691683889.4638152-CDS-L-elsbetiae_contig8042:5905..6054Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8042 5906..6054 -
1622816889.2623603-CDS-L-elsbetiae_contig8042:7433..75041622816889.2623603-CDS-L-elsbetiae_contig8042:7433..7504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8042 7434..7504 -
1691683889.476127-CDS-L-elsbetiae_contig8042:7433..75041691683889.476127-CDS-L-elsbetiae_contig8042:7433..7504Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8042 7434..7504 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816889.2742105-UTR-L-elsbetiae_contig8042:7504..76631622816889.2742105-UTR-L-elsbetiae_contig8042:7504..7663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8042 7505..7663 -
1691683889.4863367-UTR-L-elsbetiae_contig8042:7504..76631691683889.4863367-UTR-L-elsbetiae_contig8042:7504..7663Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8042 7505..7663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8042.17031.1

>prot_L-elsbetiae_contig8042.17031.1 ID=prot_L-elsbetiae_contig8042.17031.1|Name=mRNA_L-elsbetiae_contig8042.17031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MNPQRDFDSDTMGTRLRDLWASKTAVANADRATAKQNTPDAESRLKAKRV
LFGSSLMALLDLEPSLDAPWLDAGAIVLAGNRLNGLLDSNYPRTPKEQQE
QEEW
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mRNA from alignment at L-elsbetiae_contig8042:5348..7663-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8042.17031.1 ID=mRNA_L-elsbetiae_contig8042.17031.1|Name=mRNA_L-elsbetiae_contig8042.17031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2316bp|location=Sequence derived from alignment at L-elsbetiae_contig8042:5348..7663- (Laminarionema elsbetiae ELsaHSoW15)
CTACCTAAATGAAATACTAATGCAAGCAATACACCTGTACTGGCGTTTGG
TCTTCGTCGAAACGTTCAGTGTTCCGCCTGCGGCCGTGTTCGCGCTTCTA
CCAGGTGCCCTGCAAGTTCAACGATACATGGCGGAAGATCGATCGTCACG
AAGTAAATCATGAATCCACAACGTGACTTCGACTCGGATACCATGGGCAC
TCGACTGCGTGACTTGTGGGCGTCCAAAACGTAAGAGACGGCGTGTGTAT
TTGGAGGCTTGTGAGTACAACTCAAAAAACGGGGTGATTGATCGGGTTCG
TGGTCAAGCTGTTTCGAGAACTTGAACATAGGTTACATTGACCACAAAAG
CTTGTCACTGAAAGCTCATTTCCTTTGGATCCGGGAGTCGGCACATCGGA
TTGATAATATGAACCCCCTGAAGTAGCCACGCACAGTGTGCAGCAGCAGT
GGAGGGTATTTGCTACGCTTAGGTTTCGCCTCCACATTCGATGCCTGCTG
CTGCCACCGCCATCGCAGCTGCTGGATTGTTTCTGTGTACTTGGACTTGC
GAAAAAATGTGGTCCGGTCTCCCTCATCACGCACCAGATGACACGCATCG
CACCGACGATATCATCAGCACAAATCACTCACACTCACACCCACACCCAC
ACATAATCACTAGGCTACGCATACATGCATCACCAGACTTATCTATGCCT
TCCGTCAATACCCGCAATCGGTATAAATCGATCTGATACTGCCGTTGCCC
ATTTAGTACGGCGGGACTGTCAGGAGAAATACAGAGGTATACTTGTATAC
TTTACCGGTAGGGGACCTCTGTATACTGGGTGTTAATCCCGCTAATTGAT
TATTTTAGAGCAGTCAGAACCTAGATGTATCCCAGGTTGTCGACCACCTG
AGACCACCCAGCAAGGAGAGAAAAACGTCGAGAGACGGTGATGTTTTGAA
GGCCCAGGAGCCTTTCTAGTGTATCACCCAACATCCCCTACAATATATCT
CGGCTCGCGAAATGGCCGCGGCGGCTGTTCCGGTGTGGCCAGTGTCTTCT
GAAAGAGAAGTCTCTTTCTGCAGAGCGAGAACTTTTTTCTCTGTGTGCAG
GCCCTCAAAATGTGAACAGACCTCGGGTTGCTCGACCGTCGGCAGATCGA
GGAGCCTACACAGAGTCTCGGAGGGGTTATTAAGATGTTGGCAGTGTTTT
TAGTTAATTTTCAAAACCTTCTTGGCTGTACAAGCTACTAGTAGCAACCT
GAGGTTGGTGATCACGTTTGCTTCTATGGCAGGGCTTGCTGCTGTTATAA
CTGCTGCTGATGCTTTTGTACCTCAAGCTTATAAAATATTCGAGAAAAAC
GGGACGACGAAGAGGGTTTCGGGCTACATTCGAACAACTTAGCAGTGCTA
TGCGCACTCGGCCGCGGACGTGAACGCCTATGTTTCGATCGAACAGTCTA
GGTCGTGAGAATCCATGTCAGGCGCGGGTTTAAGAAACGTCGAGGTGTTT
CCAATGCAGGAACATCAGGATTTAGCGTCGAGGTCCATAAAGTGCCCGCA
GCATAACATGATCCACACTGAGTGATTGCGCGGCAAACGTTTCTACTTTT
CTCTGCCAGGGCTGTCGCGAACGCCGACCGAGCCACCGCGAAGCAGAACA
CTCCTGACGCGGAGTCCAGGCTCAAGGCGAAGAGAGTTCTGTTCGGGTCT
AGTCTGATGGCTTTGCTGGATTTGGAGCCCTCTCTCGATGCTCCCTGGCT
CGATGCTGGTGCGTGTAAAGTAGGACGGGACGGAGACCAAGATAGCATTC
GGTAGATGAGAAGCGGGTTCCTACAATTAGCGTGAAATGTCTAGTACGTG
ATCGTATGTACATCATACGCTCGATAAAGTGAAGTCAGCAACCGCCTCGC
CACAATCATCACCAAAATCTTCGAGAAATTATGGCATGATCATTTCAAAC
CAACCAGCGGTTCATGGTAAAGAGAGAAAGAGACAGACAGAGGAAGAGCA
GAGGGAGACACAGGTACAGTGTGGACTAGTTGTGGCTGGTACTCTCTCCA
CACACAATAAACAGCGCACGCTTACGCACGCATACGCACGCATATGGTCT
CTTGGTTTGATTTTAGTTTTGATTTTAACATTTCCCTGATCGGCAAGCGG
TAGCGTTGTTCAACTCTTGTGGTACGTCATAGGCCACGCTCATCCTGTAG
CCTTAACCGACCCTGCACCCTCAGGTGCCATCGTCCTGGCTGGCAATCGT
CTCAACGGGCTTCTGGACTCCAATTATCCCAGAACACCTAAAGAACAACA
GGAGCAGGAAGAATGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8042:5348..7663-

>mRNA_L-elsbetiae_contig8042.17031.1 ID=mRNA_L-elsbetiae_contig8042.17031.1|Name=mRNA_L-elsbetiae_contig8042.17031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig8042:5348..7663- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCCACAACGTGACTTCGACTCGGATACCATGGGCACTCGACTGCG
TGACTTGTGGGCGTCCAAAACATGAATCCACAACGTGACTTCGACTCGGA
TACCATGGGCACTCGACTGCGTGACTTGTGGGCGTCCAAAACGGCTGTCG
CGAACGCCGACCGAGCCACCGCGAAGCAGAACACTCCTGACGCGGAGTCC
AGGCTCAAGGCGAAGAGAGTTCTGTTCGGGTCTAGTCTGATGGCTTTGCT
GGATTTGGAGCCCTCTCTCGATGCTCCCTGGCTCGATGCTGGGCTGTCGC
GAACGCCGACCGAGCCACCGCGAAGCAGAACACTCCTGACGCGGAGTCCA
GGCTCAAGGCGAAGAGAGTTCTGTTCGGGTCTAGTCTGATGGCTTTGCTG
GATTTGGAGCCCTCTCTCGATGCTCCCTGGCTCGATGCTGGTGCCATCGT
CCTGGCTGGCAATCGTCTCAACGGGCTTCTGGACTCCAATTATCCCAGAA
CACCTAAAGAACAACAGGAGCAGGAAGAATGGGTGCCATCGTCCTGGCTG
GCAATCGTCTCAACGGGCTTCTGGACTCCAATTATCCCAGAACACCTAAA
GAACAACAGGAGCAGGAAGAATGG
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