mRNA_L-elsbetiae_contig8037.17025.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8037.17025.1
Unique NamemRNA_L-elsbetiae_contig8037.17025.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8037.17025.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.470e-15
Identity = 50/95 (52.63%), Postives = 56/95 (58.95%), Query Frame = 2 
Query:  173 FFPYPQGWTTAPYTGVKGTDEKHFKCIDYILTCQPHLGRVHNVIVVPQPVLPVKADQTTTWW*PPSTFVGRFAPNRAVRPKPKQQQFSRQELYVE 457
            FF   +G     Y GV G D K    +DYILT Q H GRV NV+V+PQPV PVKAD             GR A NRAVR KPKQ+QF+RQEL  E
Sbjct:  253 FFETRKGGIWHTYNGVSGNDCKR---LDYILTRQAHHGRVSNVVVIPQPVRPVKADSDHNMVVATVNLGGRLAHNRAVRTKPKQKQFNRQELQFE 344
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BLAST of mRNA_L-elsbetiae_contig8037.17025.1 vs. uniprot
Match: A0A6H5L1Q6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q6_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.460e-15
Identity = 49/95 (51.58%), Postives = 56/95 (58.95%), Query Frame = 2 
Query:  173 FFPYPQGWTTAPYTGVKGTDEKHFKCIDYILTCQPHLGRVHNVIVVPQPVLPVKADQTTTWW*PPSTFVGRFAPNRAVRPKPKQQQFSRQELYVE 457
            FF   +G     Y GV G D K    +DYILT Q H GRV NV+V+PQPV PVKAD             GR A NRAVR KPKQ+QF+R+EL  E
Sbjct:   29 FFETRKGGIWHTYNGVSGNDCKR---LDYILTRQAHHGRVSNVVVIPQPVRPVKADSDHNMVVATVNLGGRLAHNRAVRTKPKQKQFNRRELQFE 120
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BLAST of mRNA_L-elsbetiae_contig8037.17025.1 vs. uniprot
Match: A0A6H5JR92_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR92_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.180e-11
Identity = 44/81 (54.32%), Postives = 49/81 (60.49%), Query Frame = 2 
Query:  215 GVKGTDEKHFKCIDYILTCQPHLGRVHNVIVVPQPVLPVKADQTTTWW*PPSTFVGRFAPNRAVRPKPKQQQFSRQELYVE 457
            GV G D K    +DYILT Q H GRV NVIV+PQPV PVKAD             GR A NRAVR KPKQ+Q +R E+  E
Sbjct:   85 GVSGNDCKR---LDYILTRQAHHGRVSNVIVIPQPVRPVKADSDHNMVVATVNLGGRLAHNRAVRTKPKQKQLNRLEMRFE 162
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BLAST of mRNA_L-elsbetiae_contig8037.17025.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.170e-10
Identity = 55/145 (37.93%), Postives = 68/145 (46.90%), Query Frame = 2 
Query:  173 FFPYPQGWTTAPYTGVKGTDEKHFKCIDYILTCQPHLGRVHNVIVVPQPVLPVKADQTTTWW*PPSTFV-----------------------GRFAPNRAVRPKPKQQQFSRQELYVERSSAMEDEAAVLRNLGQRPGQPPTSTP 538
            FF   +G     Y G  GTD       D+ILT Q H GRV +++V+PQPV PVKAD       P    V                       GR A +RAVR KPKQ+QF R+ L VE ++        L NLGQR  +  T+TP
Sbjct:  103 FFETRKGGIWHTYNGASGTDRWR---PDFILTRQAHRGRVSSMVVIPQPVSPVKAD-------PDHNMVLATVKTXXXXXXXXXXXXXXNLGGRLAHSRAVRTKPKQRQFDRRVLQVE-ATRWAVTTRFLLNLGQRQDERATTTP 236
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BLAST of mRNA_L-elsbetiae_contig8037.17025.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.530e-10
Identity = 41/85 (48.24%), Postives = 46/85 (54.12%), Query Frame = 2 
Query:  173 FFPYPQGWTTAPYTGVKGTDEKHFKCIDYILTCQPHLGRVHNVIVVPQPVLPVKADQTTTWW*PPSTFVGRFAPNRAVRPKPKQQ 427
            FF   +G     Y GV G D K    +DYILT Q H GRV NV+V+PQPV PVKAD             GR A NRA R  PKQ+
Sbjct:  308 FFETRKGGIWHTYNGVSGNDCKR---LDYILTRQAHHGRVSNVVVIPQPVRPVKADSDHNMVVATINLGGRLAHNRAARTNPKQE 389
[Close]
BLAST of mRNA_L-elsbetiae_contig8037.17025.1 vs. uniprot
Match: A0A6H5J745_9PHAE (MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J745_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.730e-7
Identity = 42/95 (44.21%), Postives = 53/95 (55.79%), Query Frame = 2 
Query:  173 FFPYPQGWTTAPYTGVKGTDEKHFKCIDYILTCQPHLGRVHNVIVVPQPVLPVKADQTTTWW*PPSTFVGRFAPNRAVRPKPKQQQFSRQELYVE 457
            FF   +G       GV G+D K    +DYILT Q H GRV +V+V+PQPV PVKA+        P+T        RAVR  PKQ+Q +R+EL  E
Sbjct:  844 FFETRKGGIWYTNNGVSGSDCKR---LDYILTRQAHHGRVSSVVVIPQPVRPVKAEYGL-----PTT--------RAVRTTPKQKQINRRELQFE 922
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8037.17025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JBD7_9PHAE1.470e-1552.63Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L1Q6_9PHAE4.460e-1551.58Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JR92_9PHAE1.180e-1154.32Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KN66_9PHAE1.170e-1037.93Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDS6_9PHAE1.530e-1048.24Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J745_9PHAE1.730e-744.21MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8037contigL-elsbetiae_contig8037:4162..4804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size643
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.8145368-CDS-L-elsbetiae_contig8037:4161..45451622816888.8145368-CDS-L-elsbetiae_contig8037:4161..4545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8037 4162..4545 +
1691683889.1293116-CDS-L-elsbetiae_contig8037:4161..45451691683889.1293116-CDS-L-elsbetiae_contig8037:4161..4545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8037 4162..4545 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.8288088-UTR-L-elsbetiae_contig8037:4545..48041622816888.8288088-UTR-L-elsbetiae_contig8037:4545..4804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8037 4546..4804 +
1691683889.141629-UTR-L-elsbetiae_contig8037:4545..48041691683889.141629-UTR-L-elsbetiae_contig8037:4545..4804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8037 4546..4804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8037.17025.1prot_L-elsbetiae_contig8037.17025.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8037 4162..4545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8037.17025.1

>prot_L-elsbetiae_contig8037.17025.1 ID=prot_L-elsbetiae_contig8037.17025.1|Name=mRNA_L-elsbetiae_contig8037.17025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
NEAFWHIDVRSPLSSPRPLEHGSKAARAGCGHCFVSVERSLVVRSLSVRS
LRLAITTLFPVPARVDYRAIHRCERDRRETLQVHRLHPHVSATPRPSPQR
DRCTPASTSSQGGPDHNMVVATVDLRW*
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mRNA from alignment at L-elsbetiae_contig8037:4162..4804+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8037.17025.1 ID=mRNA_L-elsbetiae_contig8037.17025.1|Name=mRNA_L-elsbetiae_contig8037.17025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=643bp|location=Sequence derived from alignment at L-elsbetiae_contig8037:4162..4804+ (Laminarionema elsbetiae ELsaHSoW15)
AATGAAGCATTTTGGCACATAGACGTGAGGTCACCGCTCTCGAGTCCTCG
GCCCTTAGAGCACGGATCGAAGGCAGCCCGGGCGGGATGTGGTCACTGTT
TTGTGTCGGTGGAGCGTAGCTTAGTTGTGCGTTCCCTCAGTGTGCGTTCC
CTCAGATTAGCAATTACGACGCTTTTTCCCGTACCCGCAAGGGTGGACTA
CCGCGCCATACACCGGTGTGAAAGGGACCGACGAGAAACACTTCAAGTGC
ATCGACTACATCCTCACGTGTCAGCCACACCTAGGCCGAGTCCACAACGT
GATCGTTGTACCCCAGCCAGTACTTCCAGTCAAGGCGGACCAGACCACAA
CATGGTGGTAGCCACCGTCGACCTTCGTTGGTAGATTCGCCCCCAACCGA
GCAGTTCGGCCCAAACCGAAACAGCAGCAGTTCAGTCGACAGGAATTATA
TGTAGAGCGAAGCAGCGCAATGGAGGATGAAGCAGCAGTTCTCCGCAACC
TTGGCCAACGACCAGGTCAGCCACCGACCAGCACACCGGGGGGCTATAGA
CAGGCACAGGCTACTGCTGTCGTCACAGGCCAGGCCAGCCCCTAGCCGGC
CGGGGCTGGAGGCCTGATACCCCGGTAGGGGTCACTGGTAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8037:4162..4804+

>mRNA_L-elsbetiae_contig8037.17025.1 ID=mRNA_L-elsbetiae_contig8037.17025.1|Name=mRNA_L-elsbetiae_contig8037.17025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig8037:4162..4804+ (Laminarionema elsbetiae ELsaHSoW15)
AATGAAGCATTTTGGCACATAGACGTGAGGTCACCGCTCTCGAGTCCTCG
GCCCTTAGAGCACGGATCGAAGGCAGCCCGGGCGGGATGTGGTCACTGTT
TTGTGTCGGTGGAGCGTAGCTTAGTTGTGCGTTCCCTCAGTGTGCGTTCC
CTCAGATTAGCAATTACGACGCTTTTTCCCGTACCCGCAAGGGTGGACTA
CCGCGCCATACACCGGTGTGAAAGGGACCGACGAGAAACACTTCAAGTGC
ATCGACTACATCCTCACGTGTCAGCCACACCTAGGCCGAGTCCACAACGT
GATCGTTGTACCCCAGCCAGTACTTCCAGTCAAGGCGGACCAGACCACAA
CATGGTGGTAGCCACCGTCGACCTTCGTTGGTAGAATGAAGCATTTTGGC
ACATAGACGTGAGGTCACCGCTCTCGAGTCCTCGGCCCTTAGAGCACGGA
TCGAAGGCAGCCCGGGCGGGATGTGGTCACTGTTTTGTGTCGGTGGAGCG
TAGCTTAGTTGTGCGTTCCCTCAGTGTGCGTTCCCTCAGATTAGCAATTA
CGACGCTTTTTCCCGTACCCGCAAGGGTGGACTACCGCGCCATACACCGG
TGTGAAAGGGACCGACGAGAAACACTTCAAGTGCATCGACTACATCCTCA
CGTGTCAGCCACACCTAGGCCGAGTCCACAACGTGATCGTTGTACCCCAG
CCAGTACTTCCAGTCAAGGCGGACCAGACCACAACATGGTGGTAGCCACC
GTCGACCTTCGTTGGTAG
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