mRNA_L-elsbetiae_contig8036.17023.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8036.17023.1
Unique NamemRNA_L-elsbetiae_contig8036.17023.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8036.17023.1 vs. uniprot
Match: A0A6H5JR22_9PHAE (Lipoyl-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR22_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 8.340e-58
Identity = 104/134 (77.61%), Postives = 114/134 (85.07%), Query Frame = 1 
Query:  244 ILYLPMPKLSPSMTRATVTKWLKAEGDEVNEYDAILELRTESLYAPGDAPVEGAAVDMVVELTEYGFVGKLFVAEGETVEVGQALMVLCEEEDHVQALSEAASPGVDVYGDDAGATGLAIATYQGYLNGKTPAD 645
            +LYLPMPKLSPSMTRATVTKWLKAEGDE+NEYDAILEL T+SLYA GDAPVEG  VDMVVEL E GFVGKLFVAEG+TVEVGQA+M +CEE ++V+ALS   SPGVD YG      GL IATYQGYLN KTPA+
Sbjct:   58 VLYLPMPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYALGDAPVEGGTVDMVVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEVENVRALSGVTSPGVDCYGG--AGEGLRIATYQGYLNHKTPAE 189
[Close]
BLAST of mRNA_L-elsbetiae_contig8036.17023.1 vs. uniprot
Match: D7FRP6_ECTSI (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP6_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 5.140e-54
Identity = 98/126 (77.78%), Postives = 107/126 (84.92%), Query Frame = 1 
Query:  259 MPKLSPSMTRATVTKWLKAEGDEVNEYDAILELRTESLYAPGDAPVEGAAVDMVVELTEYGFVGKLFVAEGETVEVGQALMVLCEEEDHVQALSEAASPGVDVYGDDAGATGLAIATYQGYLNGKT 636
            MPKLSPSMTRATVTKWLKAEGDE+NEYDAILEL T+SLYAPGDAPVEG+ VDMVVEL E GFVGKLFVAEG+TVEVGQA+M +CEEE++V+ALS A SP VD Y       G  IATYQGYLN KT
Sbjct:    1 MPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYAPGDAPVEGSTVDMVVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEEENVRALSGATSPSVDCY--SGAGEGFRIATYQGYLNHKT 124
[Close]
BLAST of mRNA_L-elsbetiae_contig8036.17023.1 vs. uniprot
Match: A0A836CE97_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE97_9STRA)

HSP 1 Score: 105 bits (262), Expect = 8.370e-23
Identity = 59/111 (53.15%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:  217 RASST---LPKDILYLPMPKLSPSMTRATVTKWLKAEGDEVNEYDAILELRTESLYAPG-DAPVEGAAVDMVVELTEYGFVGKLFVAEGETVEVGQALMVLCEEEDHVQAL 537
            RASST   +P D L+LPMP+LSPSM   T+ KWL + GDE  EY+A L + T++L A G   P    +  MVVEL E GF+ KL   EGETV VG+ + +LCEEED V AL
Sbjct:   22 RASSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSAL 132
[Close]
BLAST of mRNA_L-elsbetiae_contig8036.17023.1 vs. uniprot
Match: A0A8J9WR07_9CHLO (Probable dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WR07_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 3.450e-10
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:  241 DILYLPMPKLSPSMTRATVTKWLKAEGDEVNEYDAILELRTESL----YAPGDAPVEGAAVDMVVELTEYGFVGKLFVAEGETVEVGQALMVLCEE 516
            +++ +PMPKLSPSMT  T+++WLKA GDE+ EYD I+E+ T+ L    Y  G       +V ++VE  E G +    V +G+ V+VG  + ++ E+
Sbjct:    7 NVIVVPMPKLSPSMTEGTISRWLKAPGDEIVEYDIIMEVDTQELTEAAYKVGKF---AGSVTLLVEAQEDGIMHSHLVPQGKQVKVGTPVALMAEQ 99
[Close]
BLAST of mRNA_L-elsbetiae_contig8036.17023.1 vs. uniprot
Match: A0A7S0YW53_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YW53_9CRYP)

HSP 1 Score: 66.6 bits (161), Expect = 1.260e-9
Identity = 45/129 (34.88%), Postives = 64/129 (49.61%), Query Frame = 1 
Query:  253 LPMPKLSPSMTRATVTKWLKAEGDEVNEYDAILELRTESLYAPGDAPVEGAAVDMVVELTEYGFVGKLFVAEGETVEVGQALMVLCEEE---DHVQALSEAASPGVDVYGDDAGATGLAIATYQGYLNG 630
            +PMPKL+P M  A ++KWL  EGDEV+  D + EL  E L        E     M++E  E GFV +L  AEG  V   + ++VLC++E   D          P  +    D+GA    +  +Q Y+ G
Sbjct:    1 MPMPKLTPQMESAVLSKWLIKEGDEVSAGDLVCELEVEGLNP------ELPHATMLIETHEAGFVARLLEAEGSRVAADRGILVLCDDEASKDQFAGYERKDGPSPNSGSGDSGAR---VFCWQAYVKG 120
[Close]
BLAST of mRNA_L-elsbetiae_contig8036.17023.1 vs. uniprot
Match: A0A7S0L0Q4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L0Q4_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 3.150e-8
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:  199 CASGGKRASSTLPKDILYLPMPKLSPSMTRATVTKWLKAEGDEVNEYDAILELRTESLYAPGDAPVEGAAVDMVVELTEYGFVGKLFVAEGET 477
            C+S   RAS   P  ++  PMP+LSPSMTR  + KWL A GD V+ YD + ++ T+ L    D P  G  V + +E  E G++ K  +AEG++
Sbjct:   21 CSSSASRASFLPPHKLM--PMPRLSPSMTRGVLDKWLVAAGDAVSTYDLLCDVSTDELL---DEPKSGTHV-LEMESHEDGWLAKGLLAEGDS 107
[Close]
BLAST of mRNA_L-elsbetiae_contig8036.17023.1 vs. uniprot
Match: A0A7C0VZ72_9BACT (Dihydrolipoyllysine-residue acetyltransferase (Fragment) n=1 Tax=Candidatus Atribacteria bacterium TaxID=2053509 RepID=A0A7C0VZ72_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 3.540e-8
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:  250 YLPMPKLSPSMTRATVTKWLKAEGDEVNEYDAILELRTESLYAPGDAPVEGAAVDMVVELTEYGFVGKLFVAEGETVEVGQALMVLCEEEDHVQALSEAAS 552
            Y+ MPKL  +M + TV +WLK EGD + E + +LE+ T+    P +AP  G              + K+ V EGET+ V   + ++ EE++ +Q L E A+
Sbjct:    4 YIIMPKLGFNMDQGTVVRWLKKEGDAIEEREEVLEIETDKTVMPVEAPCSG-------------ILRKILVEEGETIAVTLPIGIIAEEKEDIQPLIEEAT 91
[Close]
BLAST of mRNA_L-elsbetiae_contig8036.17023.1 vs. uniprot
Match: A8J8X6_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J8X6_CHLRE)

HSP 1 Score: 65.1 bits (157), Expect = 3.360e-7
Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 1 
Query:  229 TLPKD-ILYLPMPKLSPSMTRATVTKWLKAEGDE-----------VNEYDAILELRTESLYAPGDAPVEGAA-VDMVVELTEYGFVGKLFVAEGETVEVGQALMVLCEEEDHVQALSEAAS 552
            ++P D +++LPMPKLS  MT   + KW   + D            V+EYD +L + T+SL        + A  V ++VE  E   V  L VAEGE VEVG+ + VLCE+ +   A+  AA+
Sbjct:   87 SVPADRLIWLPMPKLSHEMTHGRIAKWHVGDSDSGSGADPGRPTHVSEYDILLTVDTDSLVEEAYRLDQFAGTVSLLVESQEEAHVAGLLVAEGEEVEVGRPIAVLCEDPEDAAAVRSAAA 207
[Close]
BLAST of mRNA_L-elsbetiae_contig8036.17023.1 vs. uniprot
Match: A0A2K3DPA2_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DPA2_CHLRE)

HSP 1 Score: 62.8 bits (151), Expect = 5.820e-7
Identity = 43/116 (37.07%), Postives = 62/116 (53.45%), Query Frame = 1 
Query:  229 TLPKD-ILYLPMPKLSPSMTRATVTKWLKAEGDE-----------VNEYDAILELRTESLYAPGDAPVEGAA-VDMVVELTEYGFVGKLFVAEGETVEVGQALMVLCEEEDHVQAL 537
            ++P D +++LPMPKLS  MT   + KW   + D            V+EYD +L + T+SL        + A  V ++VE  E   V  L VAEGE VEVG+ + VLCE+ +   A+
Sbjct:   87 SVPADRLIWLPMPKLSHEMTHGRIAKWHVGDSDSGSGADPGRPTHVSEYDILLTVDTDSLVEEAYRLDQFAGTVSLLVESQEEAHVAGLLVAEGEEVEVGRPIAVLCEDPEDAAAV 202
[Close]
BLAST of mRNA_L-elsbetiae_contig8036.17023.1 vs. uniprot
Match: A0A7S0IYL7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IYL7_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 8.460e-7
Identity = 33/97 (34.02%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:  253 LPMPKLSPSMTRATVTKWLKAEGDEVNEYDAILELRTESLYAPGDAPVEGAAVDMVVELTEYGFVGKLFVAEGETVEVGQALMVLCEEEDHVQALSE 543
            +PMP+LSPSM+R  + +W  + GD+++ YD + ++ T+ L    D P     V + VE  E G++ K+ VAEG        + V+CE E+ V    +
Sbjct:   37 MPMPRLSPSMSRGVLERWHLSAGDQISTYDLVCDVSTDELL---DEPSSPTFV-LEVESHEDGWLAKVLVAEGGAAAPDMPIAVICENEEDVHLFKD 129
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8036.17023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR22_9PHAE8.340e-5877.61Lipoyl-binding domain-containing protein n=1 Tax=E... [more]
D7FRP6_ECTSI5.140e-5477.78Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A836CE97_9STRA8.370e-2353.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J9WR07_9CHLO3.450e-1039.58Probable dihydrolipoyllysine-residue acetyltransfe... [more]
A0A7S0YW53_9CRYP1.260e-934.88Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S0L0Q4_9EUKA3.150e-840.86Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7C0VZ72_9BACT3.540e-834.65Dihydrolipoyllysine-residue acetyltransferase (Fra... [more]
A8J8X6_CHLRE3.360e-737.19Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A2K3DPA2_CHLRE5.820e-737.07Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A7S0IYL7_9EUKA8.460e-734.02Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8036contigL-elsbetiae_contig8036:2609..5393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.9
Seed ortholog evalue6.7e-13
Seed eggNOG ortholog3067.XP_002945888.1
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.temperature-gated cation channel activity
EggNOG OGs382X7@33090,COG0508@1,COG0666@1,KOG0510@2759,KOG0557@2759
COG Functional cat.C
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionpyruvate dehydrogenase E1 component subunit beta
Ec32 orthologEc-00_003350.1
Exons3
Model size1717
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8036.17023.1prot_L-elsbetiae_contig8036.17023.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8036 3678..5279 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.6406615-UTR-L-elsbetiae_contig8036:2608..36771622816888.6406615-UTR-L-elsbetiae_contig8036:2608..3677Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8036 2609..3677 -
1691683889.01615-UTR-L-elsbetiae_contig8036:2608..36771691683889.01615-UTR-L-elsbetiae_contig8036:2608..3677Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8036 2609..3677 -
1622816888.6976404-UTR-L-elsbetiae_contig8036:5279..53931622816888.6976404-UTR-L-elsbetiae_contig8036:5279..5393Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8036 5280..5393 -
1691683889.0598068-UTR-L-elsbetiae_contig8036:5279..53931691683889.0598068-UTR-L-elsbetiae_contig8036:5279..5393Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8036 5280..5393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816888.654815-CDS-L-elsbetiae_contig8036:3677..38421622816888.654815-CDS-L-elsbetiae_contig8036:3677..3842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 3678..3842 -
1691683889.0277078-CDS-L-elsbetiae_contig8036:3677..38421691683889.0277078-CDS-L-elsbetiae_contig8036:3677..3842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 3678..3842 -
1622816888.6753569-CDS-L-elsbetiae_contig8036:4114..43151622816888.6753569-CDS-L-elsbetiae_contig8036:4114..4315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 4115..4315 -
1691683889.037889-CDS-L-elsbetiae_contig8036:4114..43151691683889.037889-CDS-L-elsbetiae_contig8036:4114..4315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 4115..4315 -
1622816888.6870658-CDS-L-elsbetiae_contig8036:5111..52791622816888.6870658-CDS-L-elsbetiae_contig8036:5111..5279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 5112..5279 -
1691683889.0473447-CDS-L-elsbetiae_contig8036:5111..52791691683889.0473447-CDS-L-elsbetiae_contig8036:5111..5279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8036 5112..5279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8036.17023.1

>prot_L-elsbetiae_contig8036.17023.1 ID=prot_L-elsbetiae_contig8036.17023.1|Name=mRNA_L-elsbetiae_contig8036.17023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
MRLARICRAANLAAASAQRGQHLPMRKACASGGKRASSTLPKDILYLPMP
KLSPSMTRATVTKWLKAEGDEVNEYDAILELRTESLYAPGDAPVEGAAVD
MVVELTEYGFVGKLFVAEGETVEVGQALMVLCEEEDHVQALSEAASPGVD
VYGDDAGATGLAIATYQGYLNGKTPAD*
back to top

mRNA from alignment at L-elsbetiae_contig8036:2609..5393-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8036.17023.1 ID=mRNA_L-elsbetiae_contig8036.17023.1|Name=mRNA_L-elsbetiae_contig8036.17023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2785bp|location=Sequence derived from alignment at L-elsbetiae_contig8036:2609..5393- (Laminarionema elsbetiae ELsaHSoW15)
CCTCGGCCGACCGGAGACCGGAGACCGGAGACTCGGTCGAGCTAGGTCGA
GCCTGGAGCCTGGAGCGGAGTGTACGTACACACCTGCCTGGCCTGCACCC
CGCATCGCATCTCGATGAGGCTTGCGAGAATATGCCGAGCTGCCAACTTG
GCTGCTGCCTCGGCCCAACGTGGCCAACATCTCCCGATGAGAAAAGCCTG
TGCTTCGGGGGGGAAGCGAGCCTCCAGCACGCTTCCCAAGGACATCTTGT
ACCTTCCGATGCCTAAACTGAGCCCGAGCATGGTGAGAAAATGTACCCTC
TCACACAAAATGGGATCCTTTTCGTCTACAATACCGTTAGTCGAATTTGC
AGTCTTTCCAATTTTCTCGCGGCTCTCTCGCGTACGGCTCTGATTTTCTG
AACATTATGTTTTCATCGATCACAACGGATTGGACGTAGCCTCCTGCGTC
GACGCCGTGTATGACCCGTATGTATAATCCTGTGCTATGTATATTACTCG
AACAACTGCTGTGAACGCCACATTTGGGTTCATGATTTCAGCGCAAAAAC
ATCATATTTCGTCACGAAAACAGCTGGCTCCTTTTTGATCCGATATCCCC
GTGGTGAACATTGTAGGTATGTACCCCCCCACTCACTACTCACTGTGTGC
ACCTCAGCACGGAACAACCGATGTCACTCACTTGCTGTGTACATCGCTTC
GAACGGACTTGCTGGGGGCTTCAGGGCACTGCTGTCCGTTAAATTTATTC
TTCCGATAGGACTGACTGTGAACGCCAAGGGCTGTCTTTGTAGATGCGAC
ATCTGCCGACAACAGCCGAAGCACGTTCCCAAAGATGCTTGCCAGTCAGC
TGACTCAAAGGCTTTTTCGACTCCACTCTCTCAAGAGCAATTCCAGCCGC
ACAGAAGACAAACACACCCTTGTGCCTAGCTCTCTACTACATGCCGTCAA
GAGCGAGACACCTGACCACCGACCTCATTTCCCGCCCGCCTCTGATCGAC
GCGTGAGCTGTGTTGCCGTTCTGATGTTTGCTCTGCAACATCGGGGTTCT
TCGTACGCTCATCTAAATTTTCACGTAGACCCGGGCCACCGTGACGAAGT
GGCTCAAGGCGGAAGGCGACGAAGTCAACGAGTATGACGCTATCTTGGAG
CTCCGCACGGAGTCCCTGTACGCACCTGGGGATGCTCCGGTCGAGGGCGC
GGCGGTCGACATGGTGGTCGAGCTCACGGAGTACGGCTTTGTTGGGAAGC
TCTTCGTAGCCGAGGGAGAAACGGTTGAGGTACGTTTGAGGCGTCTTTGC
CCACGGGTGCAGAGGGTGGGCTGCATGTGGGAGTGATGGCAAGGGTGTTT
TTTTCTTGCGTCACTTACGGTACTCGGCGGCCTGCGCCACTCGGAACCCT
GAAGAACTTGCTGCCTAGAGCATCTGTCACACGAAGGTACCGATTTATCC
AAGTCAAAACGTCGTGGGAGGGCTTTTGAAAAGGGCACTAAATTCGAACC
CACACGTATGCGTACCCCAACACCCAACCAATACCCAACCAATCGACGCA
GGTGGGGCAAGCGTTAATGGTCTTGTGCGAAGAGGAAGACCATGTGCAGG
CTCTCAGCGAGGCCGCGAGTCCCGGAGTTGACGTCTACGGCGACGACGCA
GGCGCCACGGGGCTTGCAATAGCGACGTACCAGGGCTATCTCAACGGGAA
AACACCCGCGGACTGAAAACGGTTGGCGCACGCCCGCTGACGTGCAAAGT
GGCAGGAGGCTCTGCTGTAGGGTGTAGGGTCTCGCGCGTTGGCATTCCCA
AGAATATTTGGTTACTCTTATGTACAATACCGCGAAGCCCCCACTTTTGT
CTGCTTCGTACAACTAAATGCCCTGATTTGGTGGTTACGCCTTTGCTTTT
GTCGGCGGACAAGAACGGGGGGAAATTGTGTCCATAGGCATTCGATGGGA
AATTGGTTTCAGGGGGGTTGCCGGCATCATGACGAGAGTTCGCGGGATTG
TTTTAGCTAGTTGGGTCACCAACCAGGGAGCTGATAGCAGATGTTCCCTA
AACAAACCCGGAAGGTAATTAGCGGCGGTAGCAGCAGCAGCAGTGCTTTG
CGTCCCAAAGGGTTGCCCCACAAAGGTTGTTTTGTGTCGCTATGCGAGGG
CTTCGGCAGATCGATGTTTTAGGTGGTGCTGCTGTCAGCACCGTTAGCGA
ACCTGAATCAAGCACATTTGGTCGATGGTACATAGAAACGCTGTGCTGTC
GTGTCGTACCCAGACGGTAAAGAGTGAGTGAGCGAGCGGGGTGGATAGCG
AAGTAAACTGGCCCGCCACGCCTACAGTAGGTACCCCCCGGTGCGTCCAA
TGTGTGCTCTTAAAAACTGAACTCCAGCGTGAACGATTCGCTGCAAAACC
TCGAAATATAAAATATACCCTCGCTTCTGGAAGGCTTGCAGAACTAGCAC
TGAGGCGTAGGTCCACGACCTGCCTCATGGTTAGTCCAGGCAAGCCCGCT
GCCAGAATGGTTGATACTACCGTAAGAATCGGGGTACAAGCACAGGTCGG
GGGTCTTAGCACATATCGGGATCTGAGCACAGGTGCGCGAAAAAAGACGG
GTTCAAAATTAATAGACTCCGATCTGTGCTTAGACTCCGATACCTGCGGT
GAGGTTGGGCGATGCCATGAGTGGTATCCAGCATTGTGGGTGTGCGGCTG
GTTGTTGGTGTGTGCGTGTTCACCGTTGTGTTGGCAGCAATAATGTATAC
ACCAAGTGCCGCTACGTCGCAATGCTTTGGTTTTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8036:2609..5393-

>mRNA_L-elsbetiae_contig8036.17023.1 ID=mRNA_L-elsbetiae_contig8036.17023.1|Name=mRNA_L-elsbetiae_contig8036.17023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig8036:2609..5393- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGCTTGCGAGAATATGCCGAGCTGCCAACTTGGCTGCTGCCTCGGC
CCAACGTGGCCAACATCTCCCGATGAGAAAAGCCTGTGCTTCGGGGGGGA
AGCGAGCCTCCAGCACGCTTCCCAAGGACATCTTGTACCTTCCGATGCCT
AAACTGAGCCCGAGCATGATGAGGCTTGCGAGAATATGCCGAGCTGCCAA
CTTGGCTGCTGCCTCGGCCCAACGTGGCCAACATCTCCCGATGAGAAAAG
CCTGTGCTTCGGGGGGGAAGCGAGCCTCCAGCACGCTTCCCAAGGACATC
TTGTACCTTCCGATGCCTAAACTGAGCCCGAGCATGACCCGGGCCACCGT
GACGAAGTGGCTCAAGGCGGAAGGCGACGAAGTCAACGAGTATGACGCTA
TCTTGGAGCTCCGCACGGAGTCCCTGTACGCACCTGGGGATGCTCCGGTC
GAGGGCGCGGCGGTCGACATGGTGGTCGAGCTCACGGAGTACGGCTTTGT
TGGGAAGCTCTTCGTAGCCGAGGGAGAAACGGTTGAGACCCGGGCCACCG
TGACGAAGTGGCTCAAGGCGGAAGGCGACGAAGTCAACGAGTATGACGCT
ATCTTGGAGCTCCGCACGGAGTCCCTGTACGCACCTGGGGATGCTCCGGT
CGAGGGCGCGGCGGTCGACATGGTGGTCGAGCTCACGGAGTACGGCTTTG
TTGGGAAGCTCTTCGTAGCCGAGGGAGAAACGGTTGAGGTGGGGCAAGCG
TTAATGGTCTTGTGCGAAGAGGAAGACCATGTGCAGGCTCTCAGCGAGGC
CGCGAGTCCCGGAGTTGACGTCTACGGCGACGACGCAGGCGCCACGGGGC
TTGCAATAGCGACGTACCAGGGCTATCTCAACGGGAAAACACCCGCGGAC
TGAGTGGGGCAAGCGTTAATGGTCTTGTGCGAAGAGGAAGACCATGTGCA
GGCTCTCAGCGAGGCCGCGAGTCCCGGAGTTGACGTCTACGGCGACGACG
CAGGCGCCACGGGGCTTGCAATAGCGACGTACCAGGGCTATCTCAACGGG
AAAACACCCGCGGACTGA
back to top